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Conserved domains on  [gi|613121617|gb|EZX29667|]
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hypothetical protein V018_00420, partial [Staphylococcus aureus C1891]

Protein Classification

transposase family protein( domain architecture ID 1750338)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0003677|GO:0006313
PubMed:  11774877

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS30 super family cl41324
IS30 family transposase;
5-60 2.80e-21

IS30 family transposase;


The actual alignment was detected with superfamily member NF033563:

Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 82.65  E-value: 2.80e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 613121617   5 ELISCLRQKGKRQKP---KETRGKFNIGRPISQRPKEVKKRNTFGHWEADTIVSSRGKS 60
Cdd:NF033563  90 KLYRHLRRGGKRRRPrggKDRRGKIPDGRSIEERPEEVEDRSRFGHWEGDTILGKKHKS 148
 
Name Accession Description Interval E-value
transpos_IS30 NF033563
IS30 family transposase;
5-60 2.80e-21

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 82.65  E-value: 2.80e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 613121617   5 ELISCLRQKGKRQKP---KETRGKFNIGRPISQRPKEVKKRNTFGHWEADTIVSSRGKS 60
Cdd:NF033563  90 KLYRHLRRGGKRRRPrggKDRRGKIPDGRSIEERPEEVEDRSRFGHWEGDTILGKKHKS 148
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
2-60 5.33e-18

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 74.53  E-value: 5.33e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613121617   2 INFELISCLRQKGKRQKPK----ETRGKFNIGRPISQRPKEVKKRNTFGHWEADTIVSSRGKS 60
Cdd:COG2826  125 LRKDLYRPLRRKRKRRRPRgrtrKRRGKIPDRRSISERPAEVEDRAEPGHWEGDLIIGKRGKS 187
 
Name Accession Description Interval E-value
transpos_IS30 NF033563
IS30 family transposase;
5-60 2.80e-21

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 82.65  E-value: 2.80e-21
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 613121617   5 ELISCLRQKGKRQKP---KETRGKFNIGRPISQRPKEVKKRNTFGHWEADTIVSSRGKS 60
Cdd:NF033563  90 KLYRHLRRGGKRRRPrggKDRRGKIPDGRSIEERPEEVEDRSRFGHWEGDTILGKKHKS 148
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
2-60 5.33e-18

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 74.53  E-value: 5.33e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 613121617   2 INFELISCLRQKGKRQKPK----ETRGKFNIGRPISQRPKEVKKRNTFGHWEADTIVSSRGKS 60
Cdd:COG2826  125 LRKDLYRPLRRKRKRRRPRgrtrKRRGKIPDRRSISERPAEVEDRAEPGHWEGDLIIGKRGKS 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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