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Conserved domains on  [gi|612908860|gb|EZV20493|]
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hypothetical protein U926_00695 [Staphylococcus aureus 12S00881]

Protein Classification

DUF4479 family protein( domain architecture ID 10632252)

DUF4479 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
pheT super family cl35112
phenylalanyl-tRNA synthetase subunit beta; Reviewed
 65-198 3.51e-37

phenylalanyl-tRNA synthetase subunit beta; Reviewed


The actual alignment was detected with superfamily member PRK00629:

Pssm-ID: 234804 [Multi-domain]  Cd Length: 791  Bit Score: 136.45  E-value: 3.51e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  65 TDELVnvfqKRISEAGFD----YKLNADLSpKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVA 140
Cdd:PRK00629  18 SEELA----EALTMIGLEvegvEDVAAGLS-GVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCGAPNVRAGDKVPVA 92

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 612908860 141 KVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNapEEKGIMVLNDSYEIGQAFFE 198
Cdd:PRK00629  93 LPGAVLPGGFKIKKAKLRGVESEGMLCSASELGLSD--DHDGIIELPEDAPVGTDARE 148
DUF4479 pfam14794
Domain of unknown function (DUF4479); This domain family is found in bacteria, and is ...
 20-88 1.60e-21

Domain of unknown function (DUF4479); This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with pfam01588.


:

Pssm-ID: 434215 [Multi-domain]  Cd Length: 71  Bit Score: 83.38  E-value: 1.60e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 612908860   20 PVEGELNYNKKGNVVEITNE--GNVVGYNIFEISKDITIEETGHIKLTDELVNVFQKRISEAGFDYKLNAD 88
Cdd:pfam14794   1 PDREEQTVERKGDVVRIFDEetGETVGYNIFNASSYLEIEGNGQVELTEEQVAKLNEALAKNGFEEELEVD 71
 
Name Accession Description Interval E-value
pheT PRK00629
phenylalanyl-tRNA synthetase subunit beta; Reviewed
 65-198 3.51e-37

phenylalanyl-tRNA synthetase subunit beta; Reviewed


Pssm-ID: 234804 [Multi-domain]  Cd Length: 791  Bit Score: 136.45  E-value: 3.51e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  65 TDELVnvfqKRISEAGFD----YKLNADLSpKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVA 140
Cdd:PRK00629  18 SEELA----EALTMIGLEvegvEDVAAGLS-GVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCGAPNVRAGDKVPVA 92

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 612908860 141 KVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNapEEKGIMVLNDSYEIGQAFFE 198
Cdd:PRK00629  93 LPGAVLPGGFKIKKAKLRGVESEGMLCSASELGLSD--DHDGIIELPEDAPVGTDARE 148
tRNA_bind_bactPheRS cd02796
tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. ...
 93-196 2.91e-33

tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.


Pssm-ID: 239196 [Multi-domain]  Cd Length: 103  Bit Score: 114.53  E-value: 2.91e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  93 FVVGYVETKDKHPDADKLSVLNVNVGND-TLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKE 171
Cdd:cd02796    1 VVVGKVLEVEPHPNADKLNVCKVDIGENkPLQIVCGAPNVRAGDKVVVALPGAVLPGGLKIKKRKLRGVESEGMLCSAKE 80

                         90       100
                 ....*....|....*....|....*
gi 612908860 172 LNLPNapEEKGIMVLNDSYEIGQAF 196
Cdd:cd02796   81 LGLGE--DSDGIIELPEDAPVGTDI 103
pheT_bact TIGR00472
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ...
 62-198 7.11e-31

phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273097 [Multi-domain]  Cd Length: 797  Bit Score: 118.16  E-value: 7.11e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860   62 IKLTDELVNVFQKRISEAGFD----YKLNADLSpKFVVGYVETKDKHPDADKLSVLNVNVGND-TLQIVCGAPNVEAGQK 136
Cdd:TIGR00472  12 VPLSEIDNEEIAEALTSIGLEveavIPFSKPLK-GVVVGKVLEVEPHPNADKLKVCKVDIGEKeMLQIVCGAPNVEAGKK 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 612908860  137 VVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNapEEKGIMVLNDSYEIGQAFFE 198
Cdd:TIGR00472  91 VAVALPGAKLPNGLKIKKSKLRGVESEGMLCSESELGLDE--KSDGIIVLDEDAPLGTDIAE 150
EMAP COG0073
tRNA-binding EMAP/Myf domain [Translation, ribosomal structure and biogenesis];
53-196 6.01e-28

tRNA-binding EMAP/Myf domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439843 [Multi-domain]  Cd Length: 773  Bit Score: 109.94  E-value: 6.01e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  53 DITIEETGHiKLTDELVNV--FQKRiseAGFDyklnadlspKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPN 130
Cdd:COG0073   15 DLSPEELAE-KLTMAGIEVedFEKV---GGLD---------GLRVGKVLEAEPHPNADKLLVLQVDVGEETRQIVCGAPN 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 612908860 131 VEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNapEEKGIMVLNDSYEIGQAF 196
Cdd:COG0073   82 VYAGDKVPEALVGAQVPGVVNLKPRKIRGVESEGMLCSAEELGLGE--DHDGILELPEDAPPGDDA 145
DUF4479 pfam14794
Domain of unknown function (DUF4479); This domain family is found in bacteria, and is ...
 20-88 1.60e-21

Domain of unknown function (DUF4479); This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with pfam01588.


Pssm-ID: 434215 [Multi-domain]  Cd Length: 71  Bit Score: 83.38  E-value: 1.60e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 612908860   20 PVEGELNYNKKGNVVEITNE--GNVVGYNIFEISKDITIEETGHIKLTDELVNVFQKRISEAGFDYKLNAD 88
Cdd:pfam14794   1 PDREEQTVERKGDVVRIFDEetGETVGYNIFNASSYLEIEGNGQVELTEEQVAKLNEALAKNGFEEELEVD 71
tRNA_bind pfam01588
Putative tRNA binding domain; This domain is found in prokaryotic methionyl-tRNA synthetases, ...
 93-195 5.49e-17

Putative tRNA binding domain; This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme. This domain may perform a common function in tRNA aminoacylation.


Pssm-ID: 396251 [Multi-domain]  Cd Length: 96  Bit Score: 72.66  E-value: 5.49e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860   93 FVVGYVETKDKHPDADKLSVLNVNVGNDT-LQIVCGAPNVEAGQkvvvakvgaVMPSGMVI-----KDAELRGVASSGMI 166
Cdd:pfam01588   1 LRVGKVVEAERHPNADKLLVCKVDVGEEEpRQIVSGAVNVYPPE---------ELVGRLVVvvanlKPAKLRGVESEGMI 71

                          90       100
                  ....*....|....*....|....*....
gi 612908860  167 CSMKELnlpnAPEEKGIMVLNDSYEIGQA 195
Cdd:pfam01588  72 LSAEEL----DGGSVGLLEPPADVPPGTK 96
 
Name Accession Description Interval E-value
pheT PRK00629
phenylalanyl-tRNA synthetase subunit beta; Reviewed
 65-198 3.51e-37

phenylalanyl-tRNA synthetase subunit beta; Reviewed


Pssm-ID: 234804 [Multi-domain]  Cd Length: 791  Bit Score: 136.45  E-value: 3.51e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  65 TDELVnvfqKRISEAGFD----YKLNADLSpKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVA 140
Cdd:PRK00629  18 SEELA----EALTMIGLEvegvEDVAAGLS-GVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCGAPNVRAGDKVPVA 92

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 612908860 141 KVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNapEEKGIMVLNDSYEIGQAFFE 198
Cdd:PRK00629  93 LPGAVLPGGFKIKKAKLRGVESEGMLCSASELGLSD--DHDGIIELPEDAPVGTDARE 148
tRNA_bind_bactPheRS cd02796
tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. ...
 93-196 2.91e-33

tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.


Pssm-ID: 239196 [Multi-domain]  Cd Length: 103  Bit Score: 114.53  E-value: 2.91e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  93 FVVGYVETKDKHPDADKLSVLNVNVGND-TLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKE 171
Cdd:cd02796    1 VVVGKVLEVEPHPNADKLNVCKVDIGENkPLQIVCGAPNVRAGDKVVVALPGAVLPGGLKIKKRKLRGVESEGMLCSAKE 80

                         90       100
                 ....*....|....*....|....*
gi 612908860 172 LNLPNapEEKGIMVLNDSYEIGQAF 196
Cdd:cd02796   81 LGLGE--DSDGIIELPEDAPVGTDI 103
pheT_bact TIGR00472
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ...
 62-198 7.11e-31

phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273097 [Multi-domain]  Cd Length: 797  Bit Score: 118.16  E-value: 7.11e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860   62 IKLTDELVNVFQKRISEAGFD----YKLNADLSpKFVVGYVETKDKHPDADKLSVLNVNVGND-TLQIVCGAPNVEAGQK 136
Cdd:TIGR00472  12 VPLSEIDNEEIAEALTSIGLEveavIPFSKPLK-GVVVGKVLEVEPHPNADKLKVCKVDIGEKeMLQIVCGAPNVEAGKK 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 612908860  137 VVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNapEEKGIMVLNDSYEIGQAFFE 198
Cdd:TIGR00472  91 VAVALPGAKLPNGLKIKKSKLRGVESEGMLCSESELGLDE--KSDGIIVLDEDAPLGTDIAE 150
EMAP COG0073
tRNA-binding EMAP/Myf domain [Translation, ribosomal structure and biogenesis];
53-196 6.01e-28

tRNA-binding EMAP/Myf domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439843 [Multi-domain]  Cd Length: 773  Bit Score: 109.94  E-value: 6.01e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  53 DITIEETGHiKLTDELVNV--FQKRiseAGFDyklnadlspKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPN 130
Cdd:COG0073   15 DLSPEELAE-KLTMAGIEVedFEKV---GGLD---------GLRVGKVLEAEPHPNADKLLVLQVDVGEETRQIVCGAPN 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 612908860 131 VEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNapEEKGIMVLNDSYEIGQAF 196
Cdd:COG0073   82 VYAGDKVPEALVGAQVPGVVNLKPRKIRGVESEGMLCSAEELGLGE--DHDGILELPEDAPPGDDA 145
DUF4479 pfam14794
Domain of unknown function (DUF4479); This domain family is found in bacteria, and is ...
 20-88 1.60e-21

Domain of unknown function (DUF4479); This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with pfam01588.


Pssm-ID: 434215 [Multi-domain]  Cd Length: 71  Bit Score: 83.38  E-value: 1.60e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 612908860   20 PVEGELNYNKKGNVVEITNE--GNVVGYNIFEISKDITIEETGHIKLTDELVNVFQKRISEAGFDYKLNAD 88
Cdd:pfam14794   1 PDREEQTVERKGDVVRIFDEetGETVGYNIFNASSYLEIEGNGQVELTEEQVAKLNEALAKNGFEEELEVD 71
tRNA_bindingDomain cd02153
The tRNA binding domain is also known as the Myf domain in literature. This domain is found in ...
 93-193 1.98e-19

The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. An EMAP-II-like cytokine is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain. For homodimeric members of this group which include CsaA, Trbp111 and Escherichia coli MetRS this domain acts as a dimerization domain.


Pssm-ID: 239066 [Multi-domain]  Cd Length: 99  Bit Score: 79.10  E-value: 1.98e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  93 FVVGYVETKDKHPDADKLSVLNVNVGND-TLQIVCGAPNVeagqkvvvaKVGAVMPSGMV-----IKDAELRGVASSGMI 166
Cdd:cd02153    1 LRVGKIVEAEPHPNADKLYVLKVDIGEEkPRQIVSGAANV---------YPPEELVGKKVvvavnLKPKKLRGVESEGML 71

                         90       100
                 ....*....|....*....|....*..
gi 612908860 167 CSMKELNLPNapEEKGIMVLNDSYEIG 193
Cdd:cd02153   72 LSAEELGLEE--GSVGILELPEDAPVG 96
tRNA_bind pfam01588
Putative tRNA binding domain; This domain is found in prokaryotic methionyl-tRNA synthetases, ...
 93-195 5.49e-17

Putative tRNA binding domain; This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme. This domain may perform a common function in tRNA aminoacylation.


Pssm-ID: 396251 [Multi-domain]  Cd Length: 96  Bit Score: 72.66  E-value: 5.49e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860   93 FVVGYVETKDKHPDADKLSVLNVNVGNDT-LQIVCGAPNVEAGQkvvvakvgaVMPSGMVI-----KDAELRGVASSGMI 166
Cdd:pfam01588   1 LRVGKVVEAERHPNADKLLVCKVDVGEEEpRQIVSGAVNVYPPE---------ELVGRLVVvvanlKPAKLRGVESEGMI 71

                          90       100
                  ....*....|....*....|....*....
gi 612908860  167 CSMKELnlpnAPEEKGIMVLNDSYEIGQA 195
Cdd:pfam01588  72 LSAEEL----DGGSVGLLEPPADVPPGTK 96
PheT COG0072
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ...
 92-198 1.84e-16

Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439842 [Multi-domain]  Cd Length: 793  Bit Score: 76.74  E-value: 1.84e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  92 KFVVGYVETKDKHPDADKLSVLNVNVG-NDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMK 170
Cdd:COG0072   44 GVVVVVVVVEEPHPDADDLVVVVVDVGgGEVLVVVCGAANVAVGVVVVAAPGGAVLPGGFKIKKAKIRGVESSGMLCSEE 123

                         90       100
                 ....*....|....*....|....*...
gi 612908860 171 ELNLPNapEEKGIMVLNDSYEIGQAFFE 198
Cdd:COG0072  124 ELGLGE--DHDGIIVLPPDAPVGGDARE 149
tRNA_bind_EMAP-II_like cd02799
tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of ...
 93-166 1.08e-05

tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.


Pssm-ID: 239198 [Multi-domain]  Cd Length: 105  Bit Score: 42.60  E-value: 1.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612908860  93 FVVGYVETKDKHPDADKLSVLNVNVGND-TLQIVCGAPN-VEAGQkvvvakvgavMPSGMVI-----KDAELRGVASSGM 165
Cdd:cd02799    8 IRVGKILKVRKHPDADSLYVEEIDLGEEePRTIVSGLVKfVPLEQ----------MQNRLVVvlcnlKPRKMRGVKSQGM 77


                 .
gi 612908860 166 I 166
Cdd:cd02799   78 V 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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