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Conserved domains on  [gi|612684305|gb|EZT00273|]
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hypothetical protein W460_00312, partial [Staphylococcus aureus VET0141R]

Protein Classification

transposase( domain architecture ID 11458135)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0043565|GO:0015074|GO:0006313|GO:0003677|GO:0004803
PubMed:  15469518

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
1-77 3.92e-24

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


:

Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 92.25  E-value: 3.92e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 612684305   1 MSYNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRNNLNQSYQAETAQKNYETKRKLCGRPTRF--TPEL 77
Cdd:COG2826    2 RSYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSGRRGYRAEGAQRLAEDRRRRPKRKRKLatTPEL 80
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
1-77 3.92e-24

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 92.25  E-value: 3.92e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 612684305   1 MSYNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRNNLNQSYQAETAQKNYETKRKLCGRPTRF--TPEL 77
Cdd:COG2826    2 RSYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSGRRGYRAEGAQRLAEDRRRRPKRKRKLatTPEL 80
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 2-45 9.47e-13

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 56.37  E-value: 9.47e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 612684305   2 SYNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRN 45
Cdd:pfam13936  1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISRELRRN 44
transpos_IS30 NF033563
IS30 family transposase;
36-81 1.62e-12

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 60.31  E-value: 1.62e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 612684305  36 STISREISRNNLNQSYQAETAQKNYETKRKLCGRPTRFTPELGNII 81
Cdd:NF033563   1 STISREIKRNSGLQGYKADQAQRVYEKRRKRCGRKLKLSPELIEYI 46
 
Name Accession Description Interval E-value
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
1-77 3.92e-24

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 92.25  E-value: 3.92e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 612684305   1 MSYNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRNNLNQSYQAETAQKNYETKRKLCGRPTRF--TPEL 77
Cdd:COG2826    2 RSYKHLTLEEREEIEALLKAGLSVREIARRLGRSPSTISRELKRNSGRRGYRAEGAQRLAEDRRRRPKRKRKLatTPEL 80
HTH_38 pfam13936
Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is ...
 2-45 9.47e-13

Helix-turn-helix domain; This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.


Pssm-ID: 433591 [Multi-domain]  Cd Length: 44  Bit Score: 56.37  E-value: 9.47e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 612684305   2 SYNHLTLTERARIEVLRQENYSLRSIARKLKRSVSTISREISRN 45
Cdd:pfam13936  1 KGKHLSLEEREEIARLLAEGLSLREIARRLGRSPSTISRELRRN 44
transpos_IS30 NF033563
IS30 family transposase;
36-81 1.62e-12

IS30 family transposase;


Pssm-ID: 468088 [Multi-domain]  Cd Length: 267  Bit Score: 60.31  E-value: 1.62e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 612684305  36 STISREISRNNLNQSYQAETAQKNYETKRKLCGRPTRFTPELGNII 81
Cdd:NF033563   1 STISREIKRNSGLQGYKADQAQRVYEKRRKRCGRKLKLSPELIEYI 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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