NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|612647229|gb|EZS63702|]
View 

hypothetical protein W523_00404 [Staphylococcus aureus VET0235R]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1433 super family cl06332
Protein of unknown function (DUF1433); This family contains a number of hypothetical bacterial ...
 31-118 8.80e-32

Protein of unknown function (DUF1433); This family contains a number of hypothetical bacterial proteins of unknown function approximately 100 residues in length.


The actual alignment was detected with superfamily member pfam07252:

Pssm-ID: 284628  Cd Length: 88  Bit Score: 107.56  E-value: 8.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612647229   31 YYDKQKERITIYMKHNVKGYKNISFTNFKENSMDGYSISGYINNDKKLSFTAGIRSIDDFQFDTDISYTDELGrKLIKNP 110
Cdd:pfam07252   1 YYKEQQERITKYLKYNTKGIKSVTFTNLKTSPMGIPVIEGYINNNKDLDFVAYISPEENFQFGGALSKSGELD-KLLKSP 79


                  ....*....
gi 612647229  111 -KSVSEIKK 118
Cdd:pfam07252  80 eKSVSEIKK 88
 
Name Accession Description Interval E-value
DUF1433 pfam07252
Protein of unknown function (DUF1433); This family contains a number of hypothetical bacterial ...
 31-118 8.80e-32

Protein of unknown function (DUF1433); This family contains a number of hypothetical bacterial proteins of unknown function approximately 100 residues in length.


Pssm-ID: 284628  Cd Length: 88  Bit Score: 107.56  E-value: 8.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612647229   31 YYDKQKERITIYMKHNVKGYKNISFTNFKENSMDGYSISGYINNDKKLSFTAGIRSIDDFQFDTDISYTDELGrKLIKNP 110
Cdd:pfam07252   1 YYKEQQERITKYLKYNTKGIKSVTFTNLKTSPMGIPVIEGYINNNKDLDFVAYISPEENFQFGGALSKSGELD-KLLKSP 79


                  ....*....
gi 612647229  111 -KSVSEIKK 118
Cdd:pfam07252  80 eKSVSEIKK 88
 
Name Accession Description Interval E-value
DUF1433 pfam07252
Protein of unknown function (DUF1433); This family contains a number of hypothetical bacterial ...
 31-118 8.80e-32

Protein of unknown function (DUF1433); This family contains a number of hypothetical bacterial proteins of unknown function approximately 100 residues in length.


Pssm-ID: 284628  Cd Length: 88  Bit Score: 107.56  E-value: 8.80e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612647229   31 YYDKQKERITIYMKHNVKGYKNISFTNFKENSMDGYSISGYINNDKKLSFTAGIRSIDDFQFDTDISYTDELGrKLIKNP 110
Cdd:pfam07252   1 YYKEQQERITKYLKYNTKGIKSVTFTNLKTSPMGIPVIEGYINNNKDLDFVAYISPEENFQFGGALSKSGELD-KLLKSP 79


                  ....*....
gi 612647229  111 -KSVSEIKK 118
Cdd:pfam07252  80 eKSVSEIKK 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH