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Conserved domains on  [gi|612565206|gb|EZR83115|]
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hypothetical protein W783_00220 [Staphylococcus aureus VET1368S]

Protein Classification

OsmC family protein( domain architecture ID 10022665)

OsmC (osmotically inducible protein C) family protein may function as a peroxiredoxin or hydroperoxide reductase, catalyzing the reduction of organic and inorganic peroxide substrates to protect the cell against oxidative stress

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
perox_SACOL1771 TIGR03563
peroxiredoxin, SACOL1771 subfamily; This protein family belongs to the OsmC/Ohr family ...
5-141 1.60e-71

peroxiredoxin, SACOL1771 subfamily; This protein family belongs to the OsmC/Ohr family (pfam02566, OsmC-like protein) of peroxiredoxins.


:

Pssm-ID: 132602  Cd Length: 138  Bit Score: 210.79  E-value: 1.60e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206    5 DFKVQTSWQGGRNNVGNVQGDILSENISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGTA 84
Cdd:TIGR03563   2 HFYLQANWPGGRNSVGTIQGGNLSEQISIPKEMDGPGVGTNPDEMLLGAAATCYIITLAAMLERAGLEDEKLTLESEGIV 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 612565206   85 CLNNGKFSMSKIVHHPQIQIPSDQIAQLEKRLPKLITIADNNCMISNAVRNNVDIKI 141
Cdd:TIGR03563  82 DVTNGVFTYEKIIHYPKIVLKKEAKQNLEKKAPKLAKKAESSCMISRAIQGNVEIEL 138
 
Name Accession Description Interval E-value
perox_SACOL1771 TIGR03563
peroxiredoxin, SACOL1771 subfamily; This protein family belongs to the OsmC/Ohr family ...
5-141 1.60e-71

peroxiredoxin, SACOL1771 subfamily; This protein family belongs to the OsmC/Ohr family (pfam02566, OsmC-like protein) of peroxiredoxins.


Pssm-ID: 132602  Cd Length: 138  Bit Score: 210.79  E-value: 1.60e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206    5 DFKVQTSWQGGRNNVGNVQGDILSENISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGTA 84
Cdd:TIGR03563   2 HFYLQANWPGGRNSVGTIQGGNLSEQISIPKEMDGPGVGTNPDEMLLGAAATCYIITLAAMLERAGLEDEKLTLESEGIV 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 612565206   85 CLNNGKFSMSKIVHHPQIQIPSDQIAQLEKRLPKLITIADNNCMISNAVRNNVDIKI 141
Cdd:TIGR03563  82 DVTNGVFTYEKIIHYPKIVLKKEAKQNLEKKAPKLAKKAESSCMISRAIQGNVEIEL 138
OsmC COG1764
Organic hydroperoxide reductase OsmC/OhrA [Defense mechanisms];
6-141 1.75e-32

Organic hydroperoxide reductase OsmC/OhrA [Defense mechanisms];


Pssm-ID: 441370  Cd Length: 140  Bit Score: 111.85  E-value: 1.75e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206   6 FKVQTSWQGGRNNvGNVQGD--ILSENISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGT 83
Cdd:COG1764    5 YTATATWTGNRGD-GTVSSEdgGLDLPLSSPPEFGGDGTGTNPEELLAAAYAACFMLALLAVAAQAGVTVESYEVTAEVT 83
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 612565206  84 ACLN-NGKFSMSKIVHHPQIQIPSDQIAQLEkrlpKLITIADNNCMISNAVRNNVDIKI 141
Cdd:COG1764   84 LGKDdDGGFAFTGITLRLRVTVPGLDREKAE----ELVEKAHEVCPISNALRGNITVEL 138
OsmC pfam02566
OsmC-like protein; Osmotically inducible protein C (OsmC) is a stress -induced protein found ...
39-141 8.39e-17

OsmC-like protein; Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.


Pssm-ID: 460594  Cd Length: 99  Bit Score: 70.81  E-value: 8.39e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206   39 GVGIGTNPDEMLVSAASSCYIISLAATLERA--KFTDISIEQQSIGTAclnNGKFSMSKIVHHPQIQIPSDQIAQLEkrl 116
Cdd:pfam02566   1 GDGSGPNPEELLLAALASCFAITLRAIAKKKgiKLEDLEVEVEGERDP---EGALGFTEIRLRVEVKTPDADEEKLK--- 74
                          90       100
                  ....*....|....*....|....*
gi 612565206  117 pKLITIADNNCMISNAVRNNVDIKI 141
Cdd:pfam02566  75 -KLLELAEKKCPVANTLKNGIKVEL 98
 
Name Accession Description Interval E-value
perox_SACOL1771 TIGR03563
peroxiredoxin, SACOL1771 subfamily; This protein family belongs to the OsmC/Ohr family ...
5-141 1.60e-71

peroxiredoxin, SACOL1771 subfamily; This protein family belongs to the OsmC/Ohr family (pfam02566, OsmC-like protein) of peroxiredoxins.


Pssm-ID: 132602  Cd Length: 138  Bit Score: 210.79  E-value: 1.60e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206    5 DFKVQTSWQGGRNNVGNVQGDILSENISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGTA 84
Cdd:TIGR03563   2 HFYLQANWPGGRNSVGTIQGGNLSEQISIPKEMDGPGVGTNPDEMLLGAAATCYIITLAAMLERAGLEDEKLTLESEGIV 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 612565206   85 CLNNGKFSMSKIVHHPQIQIPSDQIAQLEKRLPKLITIADNNCMISNAVRNNVDIKI 141
Cdd:TIGR03563  82 DVTNGVFTYEKIIHYPKIVLKKEAKQNLEKKAPKLAKKAESSCMISRAIQGNVEIEL 138
OsmC COG1764
Organic hydroperoxide reductase OsmC/OhrA [Defense mechanisms];
6-141 1.75e-32

Organic hydroperoxide reductase OsmC/OhrA [Defense mechanisms];


Pssm-ID: 441370  Cd Length: 140  Bit Score: 111.85  E-value: 1.75e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206   6 FKVQTSWQGGRNNvGNVQGD--ILSENISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGT 83
Cdd:COG1764    5 YTATATWTGNRGD-GTVSSEdgGLDLPLSSPPEFGGDGTGTNPEELLAAAYAACFMLALLAVAAQAGVTVESYEVTAEVT 83
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 612565206  84 ACLN-NGKFSMSKIVHHPQIQIPSDQIAQLEkrlpKLITIADNNCMISNAVRNNVDIKI 141
Cdd:COG1764   84 LGKDdDGGFAFTGITLRLRVTVPGLDREKAE----ELVEKAHEVCPISNALRGNITVEL 138
OsmC pfam02566
OsmC-like protein; Osmotically inducible protein C (OsmC) is a stress -induced protein found ...
39-141 8.39e-17

OsmC-like protein; Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.


Pssm-ID: 460594  Cd Length: 99  Bit Score: 70.81  E-value: 8.39e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206   39 GVGIGTNPDEMLVSAASSCYIISLAATLERA--KFTDISIEQQSIGTAclnNGKFSMSKIVHHPQIQIPSDQIAQLEkrl 116
Cdd:pfam02566   1 GDGSGPNPEELLLAALASCFAITLRAIAKKKgiKLEDLEVEVEGERDP---EGALGFTEIRLRVEVKTPDADEEKLK--- 74
                          90       100
                  ....*....|....*....|....*
gi 612565206  117 pKLITIADNNCMISNAVRNNVDIKI 141
Cdd:pfam02566  75 -KLLELAEKKCPVANTLKNGIKVEL 98
organ_hyd_perox TIGR03561
peroxiredoxin, Ohr subfamily; pfam02566, OsmC-like protein, contains several deeply split ...
13-141 1.81e-09

peroxiredoxin, Ohr subfamily; pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification]


Pssm-ID: 274649  Cd Length: 134  Bit Score: 52.56  E-value: 1.81e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206   13 QGGRNNVGNVQGDILSENISIPASLGGVGIGTNPdEMLVSAA-SSCYI--ISLAATLERAKFT-DISIEQQ-SIGTacLN 87
Cdd:TIGR03561   9 TGGRDGRVRSDDGLLDLDLAPPKELGGDGGGTNP-EQLFAAGyAACFDgaLKLVAGQAKVKLPaDAEVTATvGLGK--NE 85
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 612565206   88 NGKFsmsKIVHHPQIQIPSDQIAQLEkrlpKLITIADNNCMISNAVRNNVDIKI 141
Cdd:TIGR03561  86 DGGF---GLSVELKVTLPGLDQAEAE----ALVEAAHQVCPYSKATRGNIDVTL 132
YhfA COG1765
Uncharacterized OsmC-related protein [General function prediction only];
10-141 6.00e-09

Uncharacterized OsmC-related protein [General function prediction only];


Pssm-ID: 441371  Cd Length: 126  Bit Score: 51.00  E-value: 6.00e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206  10 TSWQGGRNNVGNVQGDILseNISIPASLGGVGIGTNPDEMLVSAASSCYIISLAATLERAKF--TDISIEQqsigTACLN 87
Cdd:COG1765    1 TRWEGGFRAEVETRGHTV--VIDEPPELGGTDTGPSPVELLLAALAGCTAITVRMIAKKKGIdlEGLEVEV----EGDRD 74
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 612565206  88 NGKFSMSKIVHHpqIQIPSDqiaqL-EKRLPKLITIADNNCMISNAVRNNVDIKI 141
Cdd:COG1765   75 EEPKGFTKIRVT--ITVDGD----LsEEQLERLLELAEKYCPVSDTLRNGVEITT 123
osmo_induc_OsmC TIGR03562
peroxiredoxin, OsmC subfamily; pfam02566, OsmC-like protein, contains several deeply split ...
41-139 1.22e-04

peroxiredoxin, OsmC subfamily; pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification]


Pssm-ID: 274650  Cd Length: 135  Bit Score: 39.50  E-value: 1.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 612565206   41 GIGTNPDEMLVSAASSCYIISLAATLERAKFTDISIEQQSIGTACLNNGKFSMSKIVHHPQIQIP-SDQiAQLEkrlpKL 119
Cdd:TIGR03562  39 GPGTNPEELIAAAHAGCFSMALSAALAEAGFTPESLDTTATVTLDKVGGGFAITGIHLTVRAKVPgIDE-AKFQ----EI 113
                          90       100
                  ....*....|....*....|
gi 612565206  120 ITIADNNCMISNAVrNNVDI 139
Cdd:TIGR03562 114 AEKAKEGCPVSKAL-AAVEI 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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