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Conserved domains on  [gi|600146182|gb|EYK49467|]
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hypothetical protein V628_00836 [Staphylococcus aureus T45836]

Protein Classification

TM2 domain-containing protein( domain architecture ID 10006330)

TM2 domain-containing protein similar to Bacillus subtilis membrane protein YozV

Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 26-89 1.05e-21

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


:

Pssm-ID: 441888  Cd Length: 79  Bit Score: 80.34  E-value: 1.05e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 600146182 26 MQVNKVIYILLALFLGSFGIHKFYAGKNMQGILHLIFCWTGIPHILAIISAVITVFKPADEQGN 89
Cdd:COG2314   6 SEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNR 69
 
Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 26-89 1.05e-21

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


Pssm-ID: 441888  Cd Length: 79  Bit Score: 80.34  E-value: 1.05e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 600146182 26 MQVNKVIYILLALFLGSFGIHKFYAGKNMQGILHLIFCWTGIPHILAIISAVITVFKPADEQGN 89
Cdd:COG2314   6 SEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNR 69
TM2 pfam05154
TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a ...
 26-77 3.35e-12

TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.


Pssm-ID: 428337  Cd Length: 50  Bit Score: 55.58  E-value: 3.35e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 600146182  26 MQVNKVIYILLALFLGSFGIHKFYAGKNMQGILHLIFCwtGIPHILAIISAV 77
Cdd:pfam05154  1 SGKSKLIAYLLWLFLGGFGVHRFYLGKTGTGILYLLTF--GGLGIWWLIDLI 50
 
Name Accession Description Interval E-value
TM2 COG2314
Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction ...
 26-89 1.05e-21

Uncharacterized membrane protein YozV, TM2 domain, contains pTyr [General function prediction only];


Pssm-ID: 441888  Cd Length: 79  Bit Score: 80.34  E-value: 1.05e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 600146182 26 MQVNKVIYILLALFLGSFGIHKFYAGKNMQGILHLIFCWTGIPHILAIISAVITVFKPADEQGN 89
Cdd:COG2314   6 SEKSKLVAGLLAIFLGGFGIHRFYLGKTGTGIIYLLFFWTGIPGIIGLIDGILYLTMSDEEFNR 69
TM2 pfam05154
TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a ...
 26-77 3.35e-12

TM2 domain; This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.


Pssm-ID: 428337  Cd Length: 50  Bit Score: 55.58  E-value: 3.35e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 600146182  26 MQVNKVIYILLALFLGSFGIHKFYAGKNMQGILHLIFCwtGIPHILAIISAV 77
Cdd:pfam05154  1 SGKSKLIAYLLWLFLGGFGVHRFYLGKTGTGILYLLTF--GGLGIWWLIDLI 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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