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Conserved domains on  [gi|586307197|gb|EWR10546|]
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hypothetical protein Q134_01866 [Staphylococcus aureus M1127]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SA1362_fam NF041554
SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The ...
 2-67 2.18e-15

SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The N-terminal 50 amino acids are highly hydrophobic and suggest two transmembrane alpha-helical regions. The C-terminal region rich in basic residues, variable in length, and often somewhat repetitive. The family is widespread in Gram-positive species.


:

Pssm-ID: 469439  Cd Length: 70  Bit Score: 63.23  E-value: 2.18e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586307197  2 RNIIFYLVLIIAAIGLVMNLDAFIFSIVRMLISFAVIAGIIYLIYYFFILTE----DQRKYRKAMRKYKR 67
Cdd:NF041554  1 SKIIFYVIIGLAAIGLVSQLFTNPGGLLRSILIIAVIGAIIYFIYYFFFLRRrgggEQKKYKKAVKQSKK 70
 
Name Accession Description Interval E-value
SA1362_fam NF041554
SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The ...
 2-67 2.18e-15

SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The N-terminal 50 amino acids are highly hydrophobic and suggest two transmembrane alpha-helical regions. The C-terminal region rich in basic residues, variable in length, and often somewhat repetitive. The family is widespread in Gram-positive species.


Pssm-ID: 469439  Cd Length: 70  Bit Score: 63.23  E-value: 2.18e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586307197  2 RNIIFYLVLIIAAIGLVMNLDAFIFSIVRMLISFAVIAGIIYLIYYFFILTE----DQRKYRKAMRKYKR 67
Cdd:NF041554  1 SKIIFYVIIGLAAIGLVSQLFTNPGGLLRSILIIAVIGAIIYFIYYFFFLRRrgggEQKKYKKAVKQSKK 70
 
Name Accession Description Interval E-value
SA1362_fam NF041554
SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The ...
 2-67 2.18e-15

SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The N-terminal 50 amino acids are highly hydrophobic and suggest two transmembrane alpha-helical regions. The C-terminal region rich in basic residues, variable in length, and often somewhat repetitive. The family is widespread in Gram-positive species.


Pssm-ID: 469439  Cd Length: 70  Bit Score: 63.23  E-value: 2.18e-15
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 586307197  2 RNIIFYLVLIIAAIGLVMNLDAFIFSIVRMLISFAVIAGIIYLIYYFFILTE----DQRKYRKAMRKYKR 67
Cdd:NF041554  1 SKIIFYVIIGLAAIGLVSQLFTNPGGLLRSILIIAVIGAIIYFIYYFFFLRRrgggEQKKYKKAVKQSKK 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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