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Conserved domains on  [gi|586186216|gb|EWP92046|]
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hypothetical protein Q202_02310 [Staphylococcus aureus M1204]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 10537654)

single-stranded DNA-binding protein similar to LP1413 encoded by the Cch operon from a type IV SCCmec (staphylococcal cassette chromosome carrying the mecA gene) element

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1413 pfam07205
Domain of unknown function (DUF1413); This family consists of several hypothetical bacterial ...
 14-81 3.17e-22

Domain of unknown function (DUF1413); This family consists of several hypothetical bacterial proteins which seem to be specific to firmicute species. Members of this family are typically around 100 residues in length. The function of this family is unknown.


:

Pssm-ID: 399883  Cd Length: 69  Bit Score: 81.95  E-value: 3.17e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 586186216  14 KKILGISFNLPEGEEFTFHDLNSRAN-VQCSKAVQQNVGRWFAYFVKHAPRVPFIIIGKDTHGHLVYLK 81
Cdd:pfam07205  1 KKALSELDNLPSGEEFLLKDLFGKEEwNRLSRGDRLSLGKLFLREVKKGPDVRVKVIGKKSSNQQMYEK 69
 
Name Accession Description Interval E-value
DUF1413 pfam07205
Domain of unknown function (DUF1413); This family consists of several hypothetical bacterial ...
 14-81 3.17e-22

Domain of unknown function (DUF1413); This family consists of several hypothetical bacterial proteins which seem to be specific to firmicute species. Members of this family are typically around 100 residues in length. The function of this family is unknown.


Pssm-ID: 399883  Cd Length: 69  Bit Score: 81.95  E-value: 3.17e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 586186216  14 KKILGISFNLPEGEEFTFHDLNSRAN-VQCSKAVQQNVGRWFAYFVKHAPRVPFIIIGKDTHGHLVYLK 81
Cdd:pfam07205  1 KKALSELDNLPSGEEFLLKDLFGKEEwNRLSRGDRLSLGKLFLREVKKGPDVRVKVIGKKSSNQQMYEK 69
 
Name Accession Description Interval E-value
DUF1413 pfam07205
Domain of unknown function (DUF1413); This family consists of several hypothetical bacterial ...
 14-81 3.17e-22

Domain of unknown function (DUF1413); This family consists of several hypothetical bacterial proteins which seem to be specific to firmicute species. Members of this family are typically around 100 residues in length. The function of this family is unknown.


Pssm-ID: 399883  Cd Length: 69  Bit Score: 81.95  E-value: 3.17e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 586186216  14 KKILGISFNLPEGEEFTFHDLNSRAN-VQCSKAVQQNVGRWFAYFVKHAPRVPFIIIGKDTHGHLVYLK 81
Cdd:pfam07205  1 KKALSELDNLPSGEEFLLKDLFGKEEwNRLSRGDRLSLGKLFLREVKKGPDVRVKVIGKKSSNQQMYEK 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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