|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
76-390 |
0e+00 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 538.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 76 FEEIEAQKMG--AKFKAGLEKSRQNFQEQLNNLIArYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQD 153
Cdd:PRK10416 6 KKKKKEKKEGwfERLKKGLSKTRENFGEGINGLFA-KKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 154 TEDLREVIVEKIVEIYHQEDDNseaMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQL 233
Cdd:PRK10416 85 PEELKELLKEELAEILEPVEKP---LNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 234 KVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLD 313
Cdd:PRK10416 162 QVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLD 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 585993791 314 ATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMI 390
Cdd:PRK10416 242 ATTGQNALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGGED 318
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
84-389 |
0e+00 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 529.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 84 MGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVE 163
Cdd:COG0552 1 FFERLKEGLSKTRSGLGEKLKSLFSGKKKIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKDPEELKEALKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 164 KIVEIYHQEDdnsEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVD 243
Cdd:COG0552 81 ELLEILDPVD---KPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 244 VISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQ 323
Cdd:COG0552 158 VIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKKLDPDAPHEVLLVLDATTGQNALSQ 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 585993791 324 ARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADM 389
Cdd:COG0552 238 AKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFGEE 303
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
112-386 |
1.05e-140 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 402.41 E-value: 1.05e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 112 KVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNS--EAMNIEDGRLNVI 189
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtdLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 190 LMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGV 269
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 270 DILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGI 349
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 585993791 350 VLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLF 386
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
187-385 |
7.43e-121 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 349.18 E-value: 7.43e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 187 NVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKN 266
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 267 KGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAK 346
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKKKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 585993791 347 GGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGL 385
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
187-386 |
1.96e-107 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 314.73 E-value: 1.96e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 187 NVILMVGVNGVGKTTTIGKLAYRYKMEG-KKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAK 265
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 266 NKGVDILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTA 345
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVIK------PDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTA 155
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 585993791 346 KGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLF 386
Cdd:smart00962 156 KGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLL 196
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
187-385 |
1.13e-106 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 312.94 E-value: 1.13e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 187 NVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKN 266
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 267 KGVDILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAK 346
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVA------PDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAK 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 585993791 347 GGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGL 385
Cdd:pfam00448 155 GGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
187-382 |
7.64e-86 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 259.61 E-value: 7.64e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 187 NVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKN 266
Cdd:cd03115 1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 267 KGVDILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAK 346
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVES------PDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAK 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 585993791 347 GGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYV 382
Cdd:cd03115 155 GGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFV 190
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
115-388 |
4.25e-81 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 252.59 E-value: 4.25e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 115 EDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIV----EKIVEIYHQEDDNSEAMNI-EDGRLNVI 189
Cdd:PRK14974 64 EDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKnalkEALLEVLSVGDLFDLIEEIkSKGKPVVI 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 190 LMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGV 269
Cdd:PRK14974 144 VFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGI 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 270 DILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGI 349
Cdd:PRK14974 224 DVVLIDTAGRMHTDANLMDELKKIVRVTK------PDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGA 297
|
250 260 270
....*....|....*....|....*....|....*....
gi 585993791 350 VLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFAD 388
Cdd:PRK14974 298 ALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLGE 336
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
97-379 |
4.53e-81 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 255.33 E-value: 4.53e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 97 QNFQEQLNNLIARYRKVDEDFFEALEEM---LITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVeKIVeiyHQE- 172
Cdd:COG0541 7 ERLQGAFKKLRGKGRLTEENIKEALREVrraLLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVI-KIV---HDEl 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 173 ----DDNSEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQS 248
Cdd:COG0541 83 vellGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFPEE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 249 EGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFK 328
Cdd:COG0541 163 DGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVN------PDETLLVVDAMTGQDAVNVAKAFN 236
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 585993791 329 EVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPE 379
Cdd:COG0541 237 EALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPD 287
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
187-380 |
1.93e-72 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 225.56 E-value: 1.93e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 187 NVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKN 266
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 267 KGVDILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAK 346
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLN------PDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDAR 154
|
170 180 190
....*....|....*....|....*....|....
gi 585993791 347 GGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPES 380
Cdd:cd18539 155 GGAALSIRHVTGKPIKFIGVGEKIEDLEPFHPDR 188
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
187-382 |
1.12e-62 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 200.11 E-value: 1.12e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 187 NVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKN 266
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 267 KGVDILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAK 346
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVK------PDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAK 154
|
170 180 190
....*....|....*....|....*....|....*.
gi 585993791 347 GGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYV 382
Cdd:cd17875 155 GGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFV 190
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
110-382 |
3.00e-62 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 206.98 E-value: 3.00e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 110 YRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQR----RNIQDTEDLREVIVEKIVEIYHQEDDNSEamniEDGR 185
Cdd:PRK00771 19 DEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEeeppKGLTPREHVIKIVYEELVKLLGEETEPLV----LPLK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 186 LNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAK 265
Cdd:PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 266 NKgvDILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTA 345
Cdd:PRK00771 175 KA--DVIIVDTAGRHALEEDLIEEMKEIKEAVK------PDEVLLVIDATIGQQAKNQAKAFHEAVGIGGIIITKLDGTA 246
|
250 260 270
....*....|....*....|....*....|....*..
gi 585993791 346 KGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYV 382
Cdd:PRK00771 247 KGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFI 283
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
188-382 |
1.86e-48 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 163.94 E-value: 1.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 188 VILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNK 267
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 268 GVDILICDTAGRLQNKTNLMQELEKvkrVINRAVPDApheALLCLDATTGQNALSQARNF----------KEVTNVTGIV 337
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAK---LIKENNPDL---VLFVGEALVGNDAVDQLKKFnqaladyspsDNPRLIDGIV 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 585993791 338 LTKLDGTA-KGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYV 382
Cdd:cd17876 156 LTKFDTIDdKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVV 201
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
113-385 |
2.34e-47 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 167.70 E-value: 2.34e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 113 VDEDFFEAL----EEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIV-EIYHQEDDNSEAMNIEDGRLN 187
Cdd:TIGR01425 22 IDEEVINTMlkeiCTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFeELCNLVDPGVEAFTPKKGKTC 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 188 VILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNK 267
Cdd:TIGR01425 102 VIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYEESDPVKIASEGVEKFRKE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 268 GVDILICDTAGRLQNKTNLMQELEKVKRVINravpdaPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKG 347
Cdd:TIGR01425 182 KFDIIIVDTSGRHKQEKELFEEMQQVREAIK------PDSIIFVMDGSIGQAAFGQAKAFKDSVEVGSVIITKLDGHAKG 255
|
250 260 270
....*....|....*....|....*....|....*...
gi 585993791 348 GIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGL 385
Cdd:TIGR01425 256 GGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKL 293
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
101-379 |
1.76e-37 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 139.23 E-value: 1.76e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 101 EQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAqrrniqDTEDLREVIVEKIVEIYHQEDDNSeamn 180
Cdd:COG1419 91 EEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDL------SAEEAWRALLEALARRLPVAEDPL---- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 181 IEDGRlnVILMVGVNGVGKTTTIGKLAYRYKMEG-KKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDpaavMYD 259
Cdd:COG1419 161 LDEGG--VIALVGPTGVGKTTTIAKLAARFVLRGkKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEE----LKE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 260 AINAAKNKGVdILIcDTAGRLQNKTNLMQELEKVKRVINRAvpdaphEALLCLDATT-GQNALSQARNFKEVtNVTGIVL 338
Cdd:COG1419 235 ALERLRDKDL-VLI-DTAGRSPRDPELIEELKALLDAGPPI------EVYLVLSATTkYEDLKEIVEAFSSL-GLDGLIL 305
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 585993791 339 TKLDGTAKGGIVLAIRNELHIPVKYVGLGEQL-DDLQPFNPE 379
Cdd:COG1419 306 TKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPE 347
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
188-382 |
2.45e-31 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 118.04 E-value: 2.45e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 188 VILMVGVNGVGKTTTIGKLAYRYKME-GKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAinaakn 266
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKkGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPEDLADALERL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 267 KGVDILICDTAGRLQNKTNLMQELEKvkrVINRAVPDAPHealLCLDATT-GQNALSQARNFKEVtNVTGIVLTKLDGTA 345
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKE---LLGAGEDIEVH---LVLSATTkAKDLKEIIERFSPL-GYRGLILTKLDETT 148
|
170 180 190
....*....|....*....|....*....|....*...
gi 585993791 346 KGGIVLAIRNELHIPVKYVGLGEQL-DDLQPFNPESYV 382
Cdd:cd17873 149 SLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLA 186
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
25-379 |
2.09e-29 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 118.46 E-value: 2.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 25 EEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEAD-FDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQL 103
Cdd:PRK05703 53 EDETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDaLLQAENALPEWKKELEKPSEPKEEEPKAAAESKVVQKEL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 104 NNLIaryRKVDEdffeaLEEMLiTADVGFNTVMTLTEELRMEAQRRnIQDT---EDLREVIVEKIVEIYHQEDDNSEAM- 179
Cdd:PRK05703 133 DELR---DELKE-----LKNLL-EDQLSGLRQVERIPPEFAELYKR-LKRSglsPEIAEKLLKLLLEHMPPRERTAWRYl 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 180 ------------NIEDGRLNVILMVGVNGVGKTTTIGKLAYRYKM--EGKKVMLAAGDTFRAGAIDQLKVWGERVGV--- 242
Cdd:PRK05703 203 lellanmipvrvEDILKQGGVVALVGPTGVGKTTTLAKLAARYALlyGKKKVALITLDTYRIGAVEQLKTYAKIMGIpve 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 243 DVISQSEgsdpaavMYDAINAAKNKGVdILIcDTAGRLQNKTNLMQELEKVKrvinrAVPDAPHEALLCLDATTGQNALS 322
Cdd:PRK05703 283 VVYDPKE-------LAKALEQLRDCDV-ILI-DTAGRSQRDKRLIEELKALI-----EFSGEPIDVYLVLSATTKYEDLK 348
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 585993791 323 QA-RNFKEVtNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQL-DDLQPFNPE 379
Cdd:PRK05703 349 DIyKHFSRL-PLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNGQRVpDDIKVANPE 406
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
33-278 |
3.93e-23 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 98.18 E-value: 3.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 33 EDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKfkAGLEKSRQNFQEQLNNLIARYRK 112
Cdd:TIGR03499 52 EEEAAAASAEEEASKALEQADPKPLSATAEPLELPAPQEEPAAPAAQAAEPLLPE--EELRKELEALRELLERLLAGLAW 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 113 VDEDF-FEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTedLREVIVEKIVeiYHQEDDNSeamnIEDGRlnVILM 191
Cdd:TIGR03499 130 LQRPPeRAKLYERLLEAGVSEELARELLEKLPEDADAEDAWRW--LREALEGMLP--VKPEEDPI----LEQGG--VIAL 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 192 VGVNGVGKTTTIGKLAYRYKME--GKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDpaavMYDAINAAKNKGV 269
Cdd:TIGR03499 200 VGPTGVGKTTTLAKLAARFALEhgKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE----LREALDRLRDKDL 275
|
....*....
gi 585993791 270 dILIcDTAG 278
Cdd:TIGR03499 276 -ILI-DTAG 282
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
188-387 |
2.33e-17 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 84.47 E-value: 2.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 188 VILMVGVNGVGKTTTIGKLAYRYKM-EGK-KVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEgsdpAAVMYDAINAAK 265
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVArEGAdQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD----AADLRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 266 NKgvDILICDTAGRLQNKTNLMQELEKVKRVinravpDAPHEALLCLdattgqNALSQARNFKEVT---------NVTGI 336
Cdd:PRK14723 263 DK--HLVLIDTVGMSQRDRNVSEQIAMLCGV------GRPVRRLLLL------NAASHGDTLNEVVhayrhgageDVDGC 328
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 585993791 337 VLTKLDGTAKGGIVL--AIRNELhiPVKYVGLGEQL-DDLQPFNPESYVYGLFA 387
Cdd:PRK14723 329 IITKLDEATHLGPALdtVIRHRL--PVHYVSTGQKVpEHLELAQADELVDRAFA 380
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
145-367 |
5.23e-15 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 76.54 E-value: 5.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 145 EAQRRNIQDTEDLREVI--------VEKIVEIYHQEDDNSEAM----NIEDGRLNVI-----LM--------VGVNGVGK 199
Cdd:PRK06995 190 ERQRRDPVRAALLKHLLaagfsaqlVRMLVDNLPEGDDAEAALdwvqSALAKNLPVLdsedaLLdrggvfalMGPTGVGK 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 200 TTTIGKLAYRYKME--GKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAvmydAINAAKNKGVdILIcDTA 277
Cdd:PRK06995 270 TTTTAKLAARCVMRhgASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRL----ALSELRNKHI-VLI-DTI 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 278 GRLQNktnlmqelekvkrviNRAVPD---------APHEALLCLDATTGQNALSqarnfkEVT------NVTGIVLTKLD 342
Cdd:PRK06995 344 GMSQR---------------DRMVSEqiamlhgagAPVKRLLLLNATSHGDTLN------EVVqayrgpGLAGCILTKLD 402
|
250 260
....*....|....*....|....*..
gi 585993791 343 GTAKGGIVL--AIRNELhiPVKYVGLG 367
Cdd:PRK06995 403 EAASLGGALdvVIRYKL--PLHYVSNG 427
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
188-405 |
5.65e-15 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 76.57 E-value: 5.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 188 VILMVGVNGVGKTTTIGKLAYRY--KMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVisqsEGSDPAAVMYDAINAAK 265
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFaaQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV----HEADSAESLLDLLERLR 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 266 NKGVdILIcDTAGRLQNKTNLMQELE--KVKRVINravpdapheALLCLDATTGQNALSQ-ARNFKEvTNVTGIVLTKLD 342
Cdd:PRK12727 428 DYKL-VLI-DTAGMGQRDRALAAQLNwlRAARQVT---------SLLVLPANAHFSDLDEvVRRFAH-AKPQGVVLTKLD 495
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 585993791 343 GTAKGGIVLAIRNELHIPVKYVGLGEQL-DDLQPFNPESYVYGLfADMIEQNDEITTVENDQIV 405
Cdd:PRK12727 496 ETGRFGSALSVVVDHQMPITWVTDGQRVpDDLHRANAASLVLRL-EDLRRAADKPCTPEHNHAV 558
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
96-372 |
1.07e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 75.14 E-value: 1.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 96 RQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDN 175
Cdd:PRK14722 54 RELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDAL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 176 SEamniedgRLNVILMVGVNGVGKTTTIGKLAYRYKME--GKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDp 253
Cdd:PRK14722 134 ME-------RGGVFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 254 aavMYDAINAAKNKgvDILICDTAGRLQNKTNLMQELEKVKRVinravpDAPHEALLCLDATTGQNALSQ---------A 324
Cdd:PRK14722 206 ---LQLALAELRNK--HMVLIDTIGMSQRDRTVSDQIAMLHGA------DTPVQRLLLLNATSHGDTLNEvvqayrsaaG 274
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 585993791 325 RNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDD 372
Cdd:PRK14722 275 QPKAALPDLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
96-386 |
1.33e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 74.99 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 96 RQNFQEQLNNLI-ARYRKVDEDFFEALEEMLitaDVGFNTVMT--LTEelRMEAQRRNIQDTEDLREVIVEKIVEIYHQE 172
Cdd:PRK14721 112 RQMLEEQLTTMGwSNFSQRDPGGMKVLRTLL---SAGFSPLLSrhLLE--KLPADRDFEQSLKKTISLLTLNLRTIGGDE 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 173 DdnseamnIEDGrlNVILMVGVNGVGKTTTIGKLAYRYKME--GKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEG 250
Cdd:PRK14721 187 I-------IEQG--GVYALIGPTGVGKTTTTAKLAARAVIRhgADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDI 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 251 SDpAAVMYDAInaaknKGVDILICDTAGRLQNKTNLMQEL-------EKVKRvinravpdapheaLLCLDATTGQNALSQ 323
Cdd:PRK14721 258 AD-LQLMLHEL-----RGKHMVLIDTVGMSQRDQMLAEQIamlsqcgTQVKH-------------LLLLNATSSGDTLDE 318
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 585993791 324 ARNFKEVTNVTGIVLTKLDGTAKGGIVL--AIRNELHIpvKYVGLGEQL-DDLQPFNPESYVYGLF 386
Cdd:PRK14721 319 VISAYQGHGIHGCIITKVDEAASLGIALdaVIRRKLVL--HYVTNGQKVpEDLHEANSRYLLHRIF 382
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
124-353 |
2.91e-14 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 73.95 E-value: 2.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 124 MLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEddnseamNIEDGRLNVILMVGVNGVGKTTTI 203
Cdd:PRK11889 186 MLEQNDVEQYFIHAYAEKLKVKFENATMITEEEVIEYILEDMRSHFNTE-------NVFEKEVQTIALIGPTGVGKTTTL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 204 GKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEgsdpAAVMYDAINAAKNKG-VDILICDTAGRLQN 282
Cdd:PRK11889 259 AKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTYFKEEArVDYILIDTAGKNYR 334
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 585993791 283 KTNLMQEL-EKVKRVinravpdAPHEALLCLDAT-TGQNALSQARNFKEVtNVTGIVLTKLDGTAKGGIVLAI 353
Cdd:PRK11889 335 ASETVEEMiETMGQV-------EPDYICLTLSASmKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKI 399
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
111-377 |
6.34e-14 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 73.07 E-value: 6.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 111 RKVDEDFFEA-LEEMLITadvgfntvmtLTEELRMEAQRRNIQDTEDLREVIVEKIveiyhqEDDNSEAMNIEDGRLNVI 189
Cdd:PRK12724 163 RLVREGMSQSyVEEMASK----------LEERLSPVDQGRNHNVTERAVTYLEERV------SVDSDLFSGTGKNQRKVV 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 190 LMVGVNGVGKTTTIGKLAYRYKME-GKKVMLAAGDTFRAGAIDQLKVWGERVGVDVIsqsegsdPAAVMYDAINAAKNKG 268
Cdd:PRK12724 227 FFVGPTGSGKTTSIAKLAAKYFLHmGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-------PVKDIKKFKETLARDG 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 269 VDILICDTAGRLQNKtnlMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGG 348
Cdd:PRK12724 300 SELILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376
|
250 260
....*....|....*....|....*....
gi 585993791 349 IVLAIRNELHIPVKYVGLGEQLddlqPFN 377
Cdd:PRK12724 377 SFLELADTYSKSFTYLSVGQEV----PFD 401
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
185-293 |
4.77e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 66.24 E-value: 4.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 185 RLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKvwgervGVDVISQSEGSDPAAVMYDAINAA 264
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALA 74
|
90 100
....*....|....*....|....*....
gi 585993791 265 KNKGVDILICDTAGRLQNKTNLMQELEKV 293
Cdd:smart00382 75 RKLKPDVLILDEITSLLDAEQEALLLLLE 103
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
124-353 |
1.63e-12 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 67.46 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 124 MLITADVGFNTVMTLTEELRMEAQRRNIQdTEDLREVIVEKIVEIYHQEddnseamNIEDGRLNVILMVGVNGVGKTTTI 203
Cdd:PRK06731 21 MLEQNDVEQYFIHAYAEKLKVKFENATMI-TEEVIEYILEDMSSHFNTE-------NVFEKEVQTIALIGPTGVGKTTTL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 204 GKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEgsdpAAVMYDAINAAKNKG-VDILICDTAGRLQN 282
Cdd:PRK06731 93 AKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTYFKEEArVDYILIDTAGKNYR 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 585993791 283 KTnlmqelEKVKRVINRAVPDAPHEALLCLDAT-TGQNALSQARNFKEVtNVTGIVLTKLDGTAKGGIVLAI 353
Cdd:PRK06731 169 AS------ETVEEMIETMGQVEPDYICLTLSASmKSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKI 233
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
188-380 |
1.91e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 68.22 E-value: 1.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 188 VILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISqseGSDPAAVMYDAINAAKNK 267
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSPAELEEAVQYMTYVN 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 268 GVDILICDTAGRlqnktNLMQElEKVKRVinRAVPDAPHEALLCLDATTGQNALSQARNFKEVTN--VTGIVLTKLDGTA 345
Cdd:PRK12726 285 CVDHILIDTVGR-----NYLAE-ESVSEI--SAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEipIDGFIITKMDETT 356
|
170 180 190
....*....|....*....|....*....|....*
gi 585993791 346 KGGIVLAIRNELHIPVKYVGLGEQLDDlQPFNPES 380
Cdd:PRK12726 357 RIGDLYTVMQETNLPVLYMTDGQNITE-NIFRPKS 390
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
119-368 |
4.67e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 64.15 E-value: 4.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 119 EALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVekiveIYHQEDDNSEAMNIEDGRLNVILMVGVNGVG 198
Cdd:PRK12723 112 LKIEDILRENDFSESYIKDINEFIKKEFSLSDLDDYDKVRDSVI-----IYIAKTIKCSGSIIDNLKKRVFILVGPTGVG 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 199 KTTTIGKLAYRYKMEGKK----VMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDpaavMYDAINAAKNkgVDILIC 274
Cdd:PRK12723 187 KTTTIAKLAAIYGINSDDkslnIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKD----LKEEITQSKD--FDLVLV 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 275 DTAGRlqNKTNLMQeLEKVKRVINRAVPDAphEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIR 354
Cdd:PRK12723 261 DTIGK--SPKDFMK-LAEMKELLNACGRDA--EFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLI 335
|
250
....*....|....
gi 585993791 355 NELHIPVKYVGLGE 368
Cdd:PRK12723 336 YEMRKEVSYVTDGQ 349
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
96-169 |
5.72e-11 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 58.33 E-value: 5.72e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 585993791 96 RQNFQEQLNNLIARyRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEA---QRRNIQDTEDLREVIVEKIVEIY 169
Cdd:smart00963 2 SKALGKLLGELFLT-EKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAkgeVLKGLTPKQEVKKILKEELVKIL 77
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
99-165 |
1.26e-07 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 48.62 E-value: 1.26e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 585993791 99 FQEQLNNLIAR---YRKVDEDFFEA----LEEMLITADVGFNTVMTLTEELRMEA-QRRNIQDTEDLREVIVEKI 165
Cdd:pfam02881 1 LGEKLSSLFKGlrgKGKIDEEDLEEalkeLEEALLEADVGVEVVKKIIERLREKAvGEKKLKPPQEVKKILKEEL 75
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
187-223 |
2.84e-03 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 37.03 E-value: 2.84e-03
10 20 30
....*....|....*....|....*....|....*...
gi 585993791 187 NVILMVG-VNGVGKTTTIGKLAYRYKMEGKKVMLAAGD 223
Cdd:cd01983 1 RVIAVTGgKGGVGKTTLAAALAVALAAKGYKVLLIDLD 38
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
106-221 |
3.62e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 39.57 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585993791 106 LIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRME---AQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAM--- 179
Cdd:COG0507 51 AAARLLGVAEDIEAALAALVESGPLVLDGRRYLTRLLEAEqrlARRLRRLARPALDEADVEAALAALEPRAGITLSDeqr 130
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 585993791 180 ----NIEDGRLNVILmVGVNGVGKTTTIGKLAYRYKMEGKKVMLAA 221
Cdd:COG0507 131 eavaLALTTRRVSVL-TGGAGTGKTTTLRALLAALEALGLRVALAA 175
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
187-221 |
7.99e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 36.76 E-value: 7.99e-03
10 20 30
....*....|....*....|....*....|....*
gi 585993791 187 NVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAA 221
Cdd:cd17933 13 RVSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAA 47
|
|
| |
