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Conserved domains on  [gi|581787357|gb|EVR90576|]
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delta-hemolysin [Staphylococcus aureus M1470]

Protein Classification

similar to delta-hemolysin( domain architecture ID 10014852)

protein similar to delta-hemolysin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14752 PRK14752
delta-lysin family phenol-soluble modulin;
1-44 1.10e-12

delta-lysin family phenol-soluble modulin;


:

Pssm-ID: 173213  Cd Length: 44  Bit Score: 54.60  E-value: 1.10e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 581787357  1 MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK 44
Cdd:PRK14752  1 MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK 44
 
Name Accession Description Interval E-value
PRK14752 PRK14752
delta-lysin family phenol-soluble modulin;
1-44 1.10e-12

delta-lysin family phenol-soluble modulin;


Pssm-ID: 173213  Cd Length: 44  Bit Score: 54.60  E-value: 1.10e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 581787357  1 MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK 44
Cdd:PRK14752  1 MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK 44
Delta_lysin pfam05372
Delta lysin family; Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by ...
 19-43 1.88e-04

Delta lysin family; Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers. The precise mode of action of delta-lysis is unclear.


Pssm-ID: 398831  Cd Length: 25  Bit Score: 33.88  E-value: 1.88e-04
                         10        20
                 ....*....|....*....|....*
gi 581787357  19 MAQDIISTIGDLVKWIIDTVNKFTK 43
Cdd:pfam05372  1 MAQDIISTIGDLVKWIIDTVNKFTK 25
 
Name Accession Description Interval E-value
PRK14752 PRK14752
delta-lysin family phenol-soluble modulin;
1-44 1.10e-12

delta-lysin family phenol-soluble modulin;


Pssm-ID: 173213  Cd Length: 44  Bit Score: 54.60  E-value: 1.10e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 581787357  1 MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK 44
Cdd:PRK14752  1 MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK 44
Delta_lysin pfam05372
Delta lysin family; Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by ...
 19-43 1.88e-04

Delta lysin family; Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers. The precise mode of action of delta-lysis is unclear.


Pssm-ID: 398831  Cd Length: 25  Bit Score: 33.88  E-value: 1.88e-04
                         10        20
                 ....*....|....*....|....*
gi 581787357  19 MAQDIISTIGDLVKWIIDTVNKFTK 43
Cdd:pfam05372  1 MAQDIISTIGDLVKWIIDTVNKFTK 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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