|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
1-526 |
0e+00 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 911.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 1 MNAIKRFGSAMIVPVLMFAFFGIVLGFATLFKNPTIMGSLADQHTFWFKFWSVIESGGWVIFTHMEVVFVVGLPLSLAKK 80
Cdd:TIGR02005 1 MNAIQRFGGAMFVPVLLFAFAGIVVGFAILFKNPDIMGSLADQNTFWYKFWSVIEEGGWTVFRQMPLIFVVGLPIGLAKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 81 APGHAALAALMGYLMFNTFINAILTQWPHTFGANLEKGVEN-VPGLKSIAGIATLDTNILGGIIISAIITWIHNRYYSKR 159
Cdd:TIGR02005 81 AQGRACLAALMGYLTFNYFINAILTQWGSSFGVNFTQGVGVgVSGLTSIAGIKTLDTSIIGAIIISGIITYIHNRFFDKR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 160 LPEMVGVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGYIGVWLYHFLERVLIPTGLHHFIYAPIEV 239
Cdd:TIGR02005 161 LPVFLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHHFIYGPFIF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 240 GPVVVNHGLKAEWLQHLNEFAKSTKPLKEQFPYG-FMLQGNGKVFGCLGIALAMYATTPKENRKKVAALLIPATLTAVVV 318
Cdd:TIGR02005 241 GPAVVNHGIQAYWAQHLNEFAKSTKPLKELFPYGgFALHGNSKVFGCLGIALAMYATAPPENRKKVAGLLIPATLTAVVV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 319 GITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGVVGNMGGGLLDFISTNWLPLGKEHWGTYVAQVIIGLIFVAIYFF 398
Cdd:TIGR02005 321 GITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVGNMGGGLIDFIATNWLPLFKNHWGTYVTQIIIGLCFTAIYFL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 399 LFRFLILKFDIPLPGRKKTEEEVKLFSKQDYKNKKGDSVDSKRASTGNeyeDKAAYYLDGLGGKENIKDVTNCTTRLRLT 478
Cdd:TIGR02005 401 VFRFLILKFNIPTPGREDTEEEVKLYSKADYKAKKGDSVESKRASSGN---DKAAYFLQALGGKENIKDVTNCATRLRIS 477
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 581508635 479 VYDESKVADTEYFTHQQmAHGLVKSGKSIQVVVGMTVPQVREAFEQMV 526
Cdd:TIGR02005 478 VKDESKVLDDEVFKKAG-AHGVVRSGKAIQVIVGLSVPQVREAFEQLV 524
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-513 |
1.21e-75 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 246.39 E-value: 1.21e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 1 MNAIKRFGSAMIVPVLMFAFFGIVLGFATLFKNPTIMGsladQHTFWFKFWSVIESGGWVIFTHMEVVFVVGLPLSLAkk 80
Cdd:COG1263 9 FRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLG----EGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 81 apGHAALAALMGYLMFNTFINAILTqwphtfganlekgveNVPGLKSIAGIATL---DTNILGGIIISAIITWIhNRYYS 157
Cdd:COG1263 83 --GNPALAAVIGYLLVHPTLLNAYA---------------VAGGYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFLK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 158 KRLPEMVGVFqgltFVVTISFFVMLPLAA-ITCVIWPTVQHGIGSMQHFIIA-SGYIGVWLYHFLERVLIPTGLHHFIYA 235
Cdd:COG1263 145 KKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIYGlAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 236 PievgpvvvnhglkaewlqHLNEFAKSTKplkeqfpYGFMLQGNGKVFGCLGIALAMYATTPKenRKKVAALLIPATLTA 315
Cdd:COG1263 221 I------------------FWFLLGGTGD-------DGLFPILAAAMFGQPGAALAVYLKAKP--NKKVKGLAISAALTA 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 316 VVVGITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGVVGNM--GGGLLDFISTnwLPLGKEHWGTYvaqvIIGLIFV 393
Cdd:COG1263 274 FLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSfgVGGLIDFPSI--LNPGATNLLLY----LIGLVIA 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 394 AIYFFLFRFLIlkfdiplpGRKKTEEEVKLFSKQDYKNKKGDSVDSKRASTGNEYEDKAAYYLDGLGGKENIKDVTNCTT 473
Cdd:COG1263 348 FVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVV 419
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 581508635 474 RLRLTVYDESKVADTEYFTHQQMAHGLVKSGKSIQVVVGM 513
Cdd:COG1263 420 KLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLE 459
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
8-526 |
9.01e-74 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 243.49 E-value: 9.01e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 8 GSAMIVPVLMFAFFGIVLGFATLFKNPTIMGSLA--DQHTFWFKFWSVIESGGwVIFTHMEVVFVVGLPLSLAKKAPGHA 85
Cdd:PRK10110 19 GKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPflGNPVLQAIFTWMSKIGS-FAFSFLPVMFCIAIPLGLARENKGVA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 86 ALAALMGYLMFNTFINAILTQ---WPHTFGANLEKGvenvpGLKSIAGIATLDTNILGGIIISAIITWIHNRYYSKRLPE 162
Cdd:PRK10110 98 AFAGFVGYAVMNLAVNFWLTNkgiLPTTDAAVLKAN-----NIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPD 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 163 MVGVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGYIGVWLYHFLERVLIPTGLHHFIYAPI---EV 239
Cdd:PRK10110 173 ALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIrftDA 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 240 G--PVVVNHGLKAEwlqhLNEF-AKSTKPLKEQFPYG---FMLQGNGKVF--GCLGIALAMYATTPKENRKKVAALLIPA 311
Cdd:PRK10110 253 GgtQEVCGQTVSGA----LTIFqAQLSCPTTHGFSESatrFLSQGKMPAFlgGLPGAALAMYHCARPENRHKIKGLLISG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 312 TLTAVVVGITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGV-VGNMGGGLLDFISTNWLPLGKEHWgtYVAQVIIGL 390
Cdd:PRK10110 329 VIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVtIGNTDGNIIDFVVFGILHGLSTKW--YMVPVVAAI 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 391 IFvAIYFFLFRFLILKFDIPLPGRKKTEEEvklfskqdyknkkgdSVDSKRASTGNEYEDKAAYYLDGLGGKENIKDVTN 470
Cdd:PRK10110 407 WF-VVYYVIFRFAITRFNLKTPGRDSEVAS---------------SIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDN 470
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 581508635 471 CTTRLRLTVYDESKVADTEYftHQQMAHGLVK-SGKSIQVVVGMTVPQVREAFEQMV 526
Cdd:PRK10110 471 CITRLRLSVKDMSLVDVQAL--KDNRAIGVVQlNQHNLQVVIGPQVQSVKDEMAGLM 525
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
8-344 |
5.17e-45 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 160.98 E-value: 5.17e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 8 GSAMIVPVLMFAFFGIVLGFATLfkNPTIMGSLADQHTFWFKFWSVIESGGWVIFTHMEVVFVVGLPLSLAKKAPGhAAL 87
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNL--PNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGV-AGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 88 AALMGYLMFN--TFINAILTQWPHTFGANlekgvenvpglksIAGIATLDTNILGGIIISAIITWIHNRYY---SKRLPE 162
Cdd:pfam02378 78 AGLIGLLSFNlaAAISVALTAAGLSGGGN-------------ILGIGLGATGVFGAIIPGLLAAYLYNRFEkniTIKLPD 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 163 MVGVFQGLTFVVTISFFV-MLPLAAITCVIWPTVQHGIGSMQHFIIASG-YIGVWLYHFLERVLIPTGLHHFIYAPIEV- 239
Cdd:pfam02378 145 SLPFFVGKRFVPIITGFVtLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFl 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 240 --GPVVVNHGLKAEWlqhlnefakstkplkeQFPYGFMLQGNGKVFGCLGIALAMYATTPKENRKKVAALLIPATLTAVV 317
Cdd:pfam02378 225 piGGSNPIANQQAYG----------------AGAAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFL 288
|
330 340
....*....|....*....|....*..
gi 581508635 318 VGITEPLEFTFLFIAPYLFVLHAVLAA 344
Cdd:pfam02378 289 FGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
449-522 |
1.95e-24 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 96.83 E-value: 1.95e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 581508635 449 EDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESKVaDTEYFTHQQMAHGLVKSGKSIQVVVGMTVPQVREAF 522
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKV-DEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEA 73
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-IIBC-alpha |
TIGR02005 |
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused ... |
1-526 |
0e+00 |
|
PTS system, alpha-glucoside-specific IIBC component; This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273925 [Multi-domain] Cd Length: 524 Bit Score: 911.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 1 MNAIKRFGSAMIVPVLMFAFFGIVLGFATLFKNPTIMGSLADQHTFWFKFWSVIESGGWVIFTHMEVVFVVGLPLSLAKK 80
Cdd:TIGR02005 1 MNAIQRFGGAMFVPVLLFAFAGIVVGFAILFKNPDIMGSLADQNTFWYKFWSVIEEGGWTVFRQMPLIFVVGLPIGLAKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 81 APGHAALAALMGYLMFNTFINAILTQWPHTFGANLEKGVEN-VPGLKSIAGIATLDTNILGGIIISAIITWIHNRYYSKR 159
Cdd:TIGR02005 81 AQGRACLAALMGYLTFNYFINAILTQWGSSFGVNFTQGVGVgVSGLTSIAGIKTLDTSIIGAIIISGIITYIHNRFFDKR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 160 LPEMVGVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGYIGVWLYHFLERVLIPTGLHHFIYAPIEV 239
Cdd:TIGR02005 161 LPVFLGIFQGTTFVVTIAFFVMLPCAAITCLVWPKVQMGIGSLQAFLISSGYIGVWLYTFLERILIPTGLHHFIYGPFIF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 240 GPVVVNHGLKAEWLQHLNEFAKSTKPLKEQFPYG-FMLQGNGKVFGCLGIALAMYATTPKENRKKVAALLIPATLTAVVV 318
Cdd:TIGR02005 241 GPAVVNHGIQAYWAQHLNEFAKSTKPLKELFPYGgFALHGNSKVFGCLGIALAMYATAPPENRKKVAGLLIPATLTAVVV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 319 GITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGVVGNMGGGLLDFISTNWLPLGKEHWGTYVAQVIIGLIFVAIYFF 398
Cdd:TIGR02005 321 GITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFGVVGNMGGGLIDFIATNWLPLFKNHWGTYVTQIIIGLCFTAIYFL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 399 LFRFLILKFDIPLPGRKKTEEEVKLFSKQDYKNKKGDSVDSKRASTGNeyeDKAAYYLDGLGGKENIKDVTNCTTRLRLT 478
Cdd:TIGR02005 401 VFRFLILKFNIPTPGREDTEEEVKLYSKADYKAKKGDSVESKRASSGN---DKAAYFLQALGGKENIKDVTNCATRLRIS 477
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 581508635 479 VYDESKVADTEYFTHQQmAHGLVKSGKSIQVVVGMTVPQVREAFEQMV 526
Cdd:TIGR02005 478 VKDESKVLDDEVFKKAG-AHGVVRSGKAIQVIVGLSVPQVREAFEQLV 524
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
1-513 |
1.21e-75 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 246.39 E-value: 1.21e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 1 MNAIKRFGSAMIVPVLMFAFFGIVLGFATLFKNPTIMGsladQHTFWFKFWSVIESGGWVIFTHMEVVFVVGLPLSLAkk 80
Cdd:COG1263 9 FRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGLLG----EGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 81 apGHAALAALMGYLMFNTFINAILTqwphtfganlekgveNVPGLKSIAGIATL---DTNILGGIIISAIITWIhNRYYS 157
Cdd:COG1263 83 --GNPALAAVIGYLLVHPTLLNAYA---------------VAGGYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKFLK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 158 KRLPEMVGVFqgltFVVTISFFVMLPLAA-ITCVIWPTVQHGIGSMQHFIIA-SGYIGVWLYHFLERVLIPTGLHHFIYA 235
Cdd:COG1263 145 KKLPDALGFF----FVPILTLLIMVPLALlVIGPIWPPIGNGIAAGLGWIYGlAGAIGGFIYGFLYRLLVPTGLHHGLNP 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 236 PievgpvvvnhglkaewlqHLNEFAKSTKplkeqfpYGFMLQGNGKVFGCLGIALAMYATTPKenRKKVAALLIPATLTA 315
Cdd:COG1263 221 I------------------FWFLLGGTGD-------DGLFPILAAAMFGQPGAALAVYLKAKP--NKKVKGLAISAALTA 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 316 VVVGITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGVVGNM--GGGLLDFISTnwLPLGKEHWGTYvaqvIIGLIFV 393
Cdd:COG1263 274 FLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSfgVGGLIDFPSI--LNPGATNLLLY----LIGLVIA 347
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 394 AIYFFLFRFLIlkfdiplpGRKKTEEEVKLFSKQDYKNKKGDSVDSKRASTGNEYEDKAAYYLDGLGGKENIKDVTNCTT 473
Cdd:COG1263 348 FVYYFVFTFLI--------GREDEEEEEKLATKADAKKEEAEAAAAALGGGGGLLLLEADITVLLLTLVDVVIVVVKDVV 419
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 581508635 474 RLRLTVYDESKVADTEYFTHQQMAHGLVKSGKSIQVVVGM 513
Cdd:COG1263 420 KLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIILVVVLE 459
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
5-523 |
1.32e-75 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 246.61 E-value: 1.32e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 5 KRFGSAMIVPVLMFAFFGIVLGFATLFKNPTIMGSladqhtfwfkfwSVIESGGWVIFTHMEVVFVVGLPLSLAKKAPGH 84
Cdd:TIGR01998 6 QKLGRALMLPIATLPVAALLLRIGNATHGADLLVA------------NFFIAAGGAIFDNLGLLFAIGVAIGMSKDNDGA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 85 AALAALMGYlmfntFINAILTQWPHTFGANLEKGVENvpglksiAGIATLDtNILGGIIISAIITWIHNRYYSKRLPEMV 164
Cdd:TIGR01998 74 AALAGLVAY-----FVVTKVLSPPPLAAALGIKSEIN-------MAFSAWK-NVFVGILAGLIAGALYNRFSEIKLPEAL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 165 GVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGYIGVWLYHFLERVLIPTGLHHFIYAPIEVGPVVV 244
Cdd:TIGR01998 141 SFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGALGAGIYGFLNRLLIPTGLHHALNSVFWFDVAGI 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 245 NHGLKAEWLQHLNEFAKSTKPLKEQFpYGFMLqgngkvFGCLGIALAMYATTPKENRKKVAALLIPATLTAVVVGITEPL 324
Cdd:TIGR01998 221 NDFGNFTGGGDLNRFKGIAGMFMAGF-FPIMM------FGLPAAALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPL 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 325 EFTFLFIAPYLFVLHAVLAASMDTLMYAFGVVGNMG--GGLLDFISTNWLPLGKEHWGTYVaqviIGLIFVAIYFFLFRF 402
Cdd:TIGR01998 294 EFSFMFLAPVLYALHALLTGLSLFIAAMLHWTAGFSfsAGLIDYVLSFNNPTANQPLMLLV----QGLVFFALYYVVFRF 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 403 LILKFDIPLPGRKKTEEEVklfskqdyknkkgdSVDSKRASTGNEYEDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDE 482
Cdd:TIGR01998 370 AIRRFNLKTPGREDEDPEG--------------ATAAAVTSTGDSKMQLAKQYLAALGGHDNLVSIDACITRLRLTLKDT 435
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 581508635 483 SKVADTEyfTHQQMAHGLVKSGK-SIQVVVGMTVPQVREAFE 523
Cdd:TIGR01998 436 SIVDEPA--LKALGARGVVKLGKhNLQVILGPLAEIVAGEMK 475
|
|
| PTS-IIBC-malX |
TIGR02004 |
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS ... |
8-526 |
2.59e-74 |
|
PTS system, maltose and glucose-specific IIBC component; This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273924 [Multi-domain] Cd Length: 517 Bit Score: 244.75 E-value: 2.59e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 8 GSAMIVPVLMFAFFGIVLGFATLFKNPTIMGSLA--DQHTFWFKFWSVIESGGwVIFTHMEVVFVVGLPLSLAKKAPGHA 85
Cdd:TIGR02004 12 GKTFMLPVALLAFMGILLGLGSSFSSEAMIETIPflGKPAFKIIFQWMSTIGL-VAFAYLPVMFAMAIPLGLAREEKGVA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 86 ALAALMGYLMFNTFINAILTQWPHTFgaNLEKGVENvpGLKSIAGIATLDTNILGGIIISAIITWIHNRYYSKRLPEMVG 165
Cdd:TIGR02004 91 AFSGFVGYTAMNLAINFYLTQTGVLV--DPEQLREA--GQGMVFGIQSIDTGVLGAVIVGLIVYKLHNRFYTVQMPDALA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 166 VFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGYIGVWLYHFLERVLIPTGLHHFIYAPI---EVGPV 242
Cdd:TIGR02004 167 FFGGARFVPIISALVLAVVGLVIPLVWPLFALMIMAIGQLIQRSGIFGPFLFGSGERLLLPIGLHHILVAMIrftEAGGS 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 243 VVNHGLKAEWLQHL--NEFAKSTKPLKEQFPYGFMLQGNGKVF--GCLGIALAMYATTPKENRKKVAALLIPATLTAVVV 318
Cdd:TIGR02004 247 AVVCGKEVSGALNIfyAELQCNLPISAVPSATAFLSQGKMPTFlgGLPGAALAMYHCARPANRHKIKALLLSGVVACAVG 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 319 GITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGVV-GNMGGGLLDFISTNWLPLGKEHWgtYVAqVIIGLIFVAIYF 397
Cdd:TIGR02004 327 GITEPLEFLFLFVAPLLYLVHAILTGLGFMVMALLGVViGNTDGNLIDFLVFGVLQGTYTKW--YLV-PIVAAIWFVVYY 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 398 FLFRFLILKFDIPLPGRKK--TEEEVKLFSKQDYKNKKGDsvdskrastgneyedkAAYYLDGLGGKENIKDVTNCTTRL 475
Cdd:TIGR02004 404 FVFKTAITTFDLKTPGREKvlDAEEYTEQEVAYKKTGGYD----------------AAAILAALGGQENIQSLDNCITRL 467
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 581508635 476 RLTVYDESKVADTEYFTHQqmAHGLVK-SGKSIQVVVGMTVPQVREAFEQMV 526
Cdd:TIGR02004 468 RLVVADANKVDDAKLKQLG--ALGVVKlDAHNVQVVIGTQVTTVKNQLEMIL 517
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
8-526 |
9.01e-74 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 243.49 E-value: 9.01e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 8 GSAMIVPVLMFAFFGIVLGFATLFKNPTIMGSLA--DQHTFWFKFWSVIESGGwVIFTHMEVVFVVGLPLSLAKKAPGHA 85
Cdd:PRK10110 19 GKTFMLPVALLSFCGIMLGIGSSLSSHDVITLIPflGNPVLQAIFTWMSKIGS-FAFSFLPVMFCIAIPLGLARENKGVA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 86 ALAALMGYLMFNTFINAILTQ---WPHTFGANLEKGvenvpGLKSIAGIATLDTNILGGIIISAIITWIHNRYYSKRLPE 162
Cdd:PRK10110 98 AFAGFVGYAVMNLAVNFWLTNkgiLPTTDAAVLKAN-----NIQSILGIQSIDTGILGAVIAGIIVWMLHERFHNIRLPD 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 163 MVGVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGYIGVWLYHFLERVLIPTGLHHFIYAPI---EV 239
Cdd:PRK10110 173 ALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGERLLLPFGLHHILVALIrftDA 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 240 G--PVVVNHGLKAEwlqhLNEF-AKSTKPLKEQFPYG---FMLQGNGKVF--GCLGIALAMYATTPKENRKKVAALLIPA 311
Cdd:PRK10110 253 GgtQEVCGQTVSGA----LTIFqAQLSCPTTHGFSESatrFLSQGKMPAFlgGLPGAALAMYHCARPENRHKIKGLLISG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 312 TLTAVVVGITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGV-VGNMGGGLLDFISTNWLPLGKEHWgtYVAQVIIGL 390
Cdd:PRK10110 329 VIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVtIGNTDGNIIDFVVFGILHGLSTKW--YMVPVVAAI 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 391 IFvAIYFFLFRFLILKFDIPLPGRKKTEEEvklfskqdyknkkgdSVDSKRASTGNEYEDKAAYYLDGLGGKENIKDVTN 470
Cdd:PRK10110 407 WF-VVYYVIFRFAITRFNLKTPGRDSEVAS---------------SIEKAVAGAPGKSGYNVPAILEALGGADNIVSLDN 470
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 581508635 471 CTTRLRLTVYDESKVADTEYftHQQMAHGLVK-SGKSIQVVVGMTVPQVREAFEQMV 526
Cdd:PRK10110 471 CITRLRLSVKDMSLVDVQAL--KDNRAIGVVQlNQHNLQVVIGPQVQSVKDEMAGLM 525
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
58-355 |
6.47e-63 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 207.56 E-value: 6.47e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 58 GWVIFTHMEVVFVVGLPLSLAKKAPGHAALAALMGYLMFNTFINAILTQWPHTFGANLEKGVenvpglksiagiatlDTN 137
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGGNPYLGAALAGILVHPVLNNAMGVGAQAVGNFFGFEIAKVG---------------YTG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 138 ILGGIIISAIITWIHNRYYSKRLPEMVGVFQGLTFVVTISFFVMLPLAAITCVIWPTVqhGIGSMQHFIIASG-YIGVWL 216
Cdd:TIGR00852 66 VVGPIIVGAIALALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHWLYSAGgALGGAI 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 217 YHFLERVLIPTGLHHFIYAPI--EVGPVVVNHGLKAEWLQHLNEFAKSTKPLKEQFPYG---FMLQG--NGKVFGCLGIA 289
Cdd:TIGR00852 144 FGFLYRLLVPTGLHHIFYAIFiqLIAGGTVIGGGQVIPGDALANMAQGGAALAVFFTAGdakFKSIGlpAAFSAGLGITE 223
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 581508635 290 LAMYATTPKENRKKVAALLIPATLTAVVVGITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGV 355
Cdd:TIGR00852 224 PAMYGVALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPGLYSIHAVLAGSIFTVAIGMGI 289
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
4-512 |
2.01e-61 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 209.19 E-value: 2.01e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 4 IKRFGSAMIVPVLMFAFFGIVLGFATlfKNPTIMGSLADQhtfwfkfwsVIESGGWVIFTHMEVVFVVGLPLSLAKKaPG 83
Cdd:PRK11089 9 LQKVGKSLMLPVSVLPIAGILLGVGS--ANFSWLPAVVSH---------VMAEAGGSVFANMPLIFAIGVALGFTNN-DG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 84 HAALAALMGYlmfntfinAILTQwphTFGAnLEKGVENVPGlKSIAGIATLDTNILGGIIISAIITWIHNRYYSKRLPEM 163
Cdd:PRK11089 77 VSALAAVVAY--------GIMVK---TMAV-VAPLVLHLPA-EEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRIKLPEY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 164 VGVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSM------QHFIIASGyigvwLYHFLERVLIPTGLHHFIYAP- 236
Cdd:PRK11089 144 LGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFsqwaayQNPVVAFG-----IYGFVERSLVPFGLHHIWNVPf 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 237 -IEVGPVV-----VNHGLKAEWLqhlnefakSTKPLKEQFPYGFMLqgngKVFGCLGIALAMYATTPKENRKKVAALLIP 310
Cdd:PRK11089 219 qMQIGEYTnaagqVFHGDIPRYM--------AGDPTAGKLSGGFLF----KMYGLPAAAIAIWHSAKPENRAKVGGIMIS 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 311 ATLTAVVVGITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGVVG--NMGGGLLDFI------STNWLplgkehwgty 382
Cdd:PRK11089 287 AALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDgtSFSHGLIDFIvlsgnsSKLWL---------- 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 383 vaQVIIGLIFVAIYFFLFRFLILKFDIPLPGRKKTEEEVKlfskqdyknkkgdsvdskrASTGNEYedkAAYYLDGLGGK 462
Cdd:PRK11089 357 --FPIVGIGYAIVYYTIFRVLIKALDLKTPGREDETEDAK-------------------ATGTSEM---APALVAAFGGK 412
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 581508635 463 ENIKDVTNCTTRLRLTVYDESKVADTEYftHQQMAHGLVKSGKSIQVVVG 512
Cdd:PRK11089 413 ENITNLDACITRLRVSVADVSKVDQAGL--KKLGAAGVVVAGSGVQAIFG 460
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
52-526 |
1.41e-51 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 186.62 E-value: 1.41e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 52 SVIESGGWVIFTHMEVVFVVGLPLSLAKKAPGHAALAALMGYLmfntfinaILTQWPHTFGANLEKGVenvpglksIAGI 131
Cdd:PRK10255 39 AFIAQAGGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYF--------VLTKAMVTINPEINMGV--------LAGI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 132 ATldtNILGGIIisaiitwiHNRYYSKRLPEMVGVFQGLTFVVTISFFVMLPLAAITCVIWPTVQHGIGSMQHFIIASGY 211
Cdd:PRK10255 103 IT---GLVGGAA--------YNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIVSAGA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 212 IGVWLYHFLERVLIPTGLHHFI--YAPIEVGPV-----VVNHGlkaewlqHLNEFAkSTKPLKEQFPYGFMLQgngKVFG 284
Cdd:PRK10255 172 LGSGIFGFINRLLIPTGLHQVLntIAWFQIGEFtnaagTVFHG-------DINRFY-AGDGTAGMFMSGFFPI---MMFG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 285 CLGIALAMYATTPKENRKKVAALLIPATLTAVVVGITEPLEFTFLFIAPYLFVLHAVLAASMDTLMYAFGVVG--NMGGG 362
Cdd:PRK10255 241 LPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAgfSFSAG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 363 LLDFISTNWLPLGKEH-WgtyvAQVIIGLIFVAIYFFLFRFLILKFDIPLPGRKKTEEEVklfskqdyknkkgdsVDSKR 441
Cdd:PRK10255 321 AIDYALMYNLPAASQNvW----MLLVMGVVFFAIYFVLFSAVIRMFNLKTPGREDKEDEI---------------VTEEA 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 442 ASTGNE-YEDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESKVADTEyfTHQQMAHGLVKSGK-SIQVVVGMTVPQVR 519
Cdd:PRK10255 382 NSNTEEgLTQLATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDAM--CKRLGASGVVKLNKqTIQVIVGAKAESIG 459
|
....*..
gi 581508635 520 EAFEQMV 526
Cdd:PRK10255 460 DAMKKVV 466
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
8-344 |
5.17e-45 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 160.98 E-value: 5.17e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 8 GSAMIVPVLMFAFFGIVLGFATLfkNPTIMGSLADQHTFWFKFWSVIESGGWVIFTHMEVVFVVGLPLSLAKKAPGhAAL 87
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGNL--PNDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGGDGV-AGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 88 AALMGYLMFN--TFINAILTQWPHTFGANlekgvenvpglksIAGIATLDTNILGGIIISAIITWIHNRYY---SKRLPE 162
Cdd:pfam02378 78 AGLIGLLSFNlaAAISVALTAAGLSGGGN-------------ILGIGLGATGVFGAIIPGLLAAYLYNRFEkniTIKLPD 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 163 MVGVFQGLTFVVTISFFV-MLPLAAITCVIWPTVQHGIGSMQHFIIASG-YIGVWLYHFLERVLIPTGLHHFIYAPIEV- 239
Cdd:pfam02378 145 SLPFFVGKRFVPIITGFVtLLVIGPVLGLIWPAIQGGLNALGLLLIIAGgILGGLIFGFLERLLWPFGLHGAFIAIFWFl 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 240 --GPVVVNHGLKAEWlqhlnefakstkplkeQFPYGFMLQGNGKVFGCLGIALAMYATTPKENRKKVAALLIPATLTAVV 317
Cdd:pfam02378 225 piGGSNPIANQQAYG----------------AGAAHILTGGFDVMFGGPGATLALYAAAFLFKKSKVKKLLGSAALTPFL 288
|
330 340
....*....|....*....|....*..
gi 581508635 318 VGITEPLEFTFLFIAPYLFVLHAVLAA 344
Cdd:pfam02378 289 FGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
378-533 |
2.57e-30 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 115.96 E-value: 2.57e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 378 HWGTYVAQVIIGLIFVAIYFFLFRFLILKFDIPLPGRKktEEEVKLFSKQDYKNKKGDSVdskrASTGNEYEDKAAYYLD 457
Cdd:PRK09702 5 HADMMLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGRE--DAEVKLYSKAEYKASRGQTT----AAEPKKELDQAAGILQ 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 581508635 458 GLGGKENIKDVTNCTTRLRLTVYDESKVADTEYFThQQMAHGLVKSGKSIQVVVGMTVPQVREAFEQMVED-QSSED 533
Cdd:PRK09702 79 ALGGVGNISSINNCATRLRIALHDMSQTLDDEVFK-KLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINShQSAEN 154
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
449-526 |
1.82e-24 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 96.73 E-value: 1.82e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 581508635 449 EDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESKVaDTEYFtHQQMAHGLVKSGKSIQVVVGMTVPQVREAFEQMV 526
Cdd:COG1264 1 KELAKDILEALGGKENIVSVDHCATRLRVTVKDPSKV-DEAAL-KKLGVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
449-522 |
1.95e-24 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 96.83 E-value: 1.95e-24
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 581508635 449 EDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESKVaDTEYFTHQQMAHGLVKSGKSIQVVVGMTVPQVREAF 522
Cdd:cd00212 1 EQLAKDILEALGGKENIVSLDHCATRLRLTVKDESKV-DEAALKKLGGVKGVVKNGGQYQVIIGPGVADVYKEA 73
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
405-512 |
1.90e-13 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 65.84 E-value: 1.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 405 LKFDIPLPGRKKTEEEvklfskqdyKNKKGDSVdskrastgnEYEDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESK 484
Cdd:TIGR00826 1 TRLRLKTPGREKADEE---------AIAAGEGV---------KGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSK 62
|
90 100
....*....|....*....|....*....
gi 581508635 485 VADTeyfTHQQM-AHGLVKSGKSIQVVVG 512
Cdd:TIGR00826 63 VDDA---VLKKLgAHGVNPLQRAVQVISG 88
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
455-484 |
1.08e-12 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 62.00 E-value: 1.08e-12
10 20 30
....*....|....*....|....*....|
gi 581508635 455 YLDGLGGKENIKDVTNCTTRLRLTVYDESK 484
Cdd:pfam00367 3 ILEALGGKENIKSVDHCATRLRLTVKDESK 32
|
|
| PRK09824 |
PRK09824 |
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional |
447-521 |
2.80e-07 |
|
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Pssm-ID: 236627 [Multi-domain] Cd Length: 627 Bit Score: 53.18 E-value: 2.80e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 581508635 447 EYEDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESKvADTEYFTHQQMAHGLVKSGKSIQVVVGMTVPQVREA 521
Cdd:PRK09824 2 EYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSK-AQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLA 75
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
456-534 |
8.97e-06 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 48.25 E-value: 8.97e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 581508635 456 LDGLGGKENIKDVTNCTTRLRLTVYDESKVaDTEYFTHQQMAHGLVKSGKSIQVVVGMTVPQVREAFEQMVEDQSSEDK 534
Cdd:PRK09796 13 IAALGGVDNISAVTHCMTRLRFVIKDDALI-DSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQ 90
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
459-521 |
3.08e-05 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 46.60 E-value: 3.08e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 581508635 459 LGGKENIKDVTNCTTRLRLTVYDESKvADTEYFTHQQMAHGLVKSGKSIQVVVGMTVPQVREA 521
Cdd:PRK11007 17 VGGRENIATVSHCITRLRFVLNDPAN-ADPKEIEQLPMVKGCFTNAGQFQVVIGTEVGDYYKA 78
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
439-526 |
9.64e-05 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 44.64 E-value: 9.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581508635 439 SKRASTGNEYEDKAAYYLDGLGGKENIKDVTNCTTRLRLTVYDESKVaDTEYFTHQQMAHGLVKSGKSIQVVVGMTVpqV 518
Cdd:PRK14905 265 SKIDPIIHKFSEIAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHI-DKSAIEKIDCVKGLFSIANQYQIILGAGI--V 341
|
....*...
gi 581508635 519 REAFEQMV 526
Cdd:PRK14905 342 EKIHEEMK 349
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
456-512 |
5.65e-04 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 42.36 E-value: 5.65e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 581508635 456 LDGLGGKENIKDVTNCTTRLRLTVYDESkVADTEYFTHQQMAHGLVKSGKSIQVVVG 512
Cdd:PRK09586 13 LTRVGGPGNIASCGNCMTRLRLTLHDSS-LVDPAAIKTIEGVKGVILSDDQVQVVLG 68
|
|
| |
