surface protein G [Staphylococcus aureus M1094]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
Bact_lectin | pfam18483 | Bacterial lectin; This entry primarily matches to legume-like lectin domains found in ... |
167-388 | 1.08e-41 | ||||
Bacterial lectin; This entry primarily matches to legume-like lectin domains found in prokaryotes. : Pssm-ID: 465784 Cd Length: 211 Bit Score: 146.82 E-value: 1.08e-41
|
||||||||
YSIRK_signal | pfam04650 | YSIRK type signal peptide; Many surface proteins found in Streptococcus, Staphylococcus, and ... |
17-42 | 2.98e-08 | ||||
YSIRK type signal peptide; Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus. : Pssm-ID: 428049 [Multi-domain] Cd Length: 26 Bit Score: 49.31 E-value: 2.98e-08
|
||||||||
MSCRAMM_ClfA super family | cl41352 | MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
18-163 | 3.06e-05 | ||||
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif. The actual alignment was detected with superfamily member NF033609: Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.44 E-value: 3.06e-05
|
||||||||
Name | Accession | Description | Interval | E-value | ||||
Bact_lectin | pfam18483 | Bacterial lectin; This entry primarily matches to legume-like lectin domains found in ... |
167-388 | 1.08e-41 | ||||
Bacterial lectin; This entry primarily matches to legume-like lectin domains found in prokaryotes. Pssm-ID: 465784 Cd Length: 211 Bit Score: 146.82 E-value: 1.08e-41
|
||||||||
YSIRK_signal | pfam04650 | YSIRK type signal peptide; Many surface proteins found in Streptococcus, Staphylococcus, and ... |
17-42 | 2.98e-08 | ||||
YSIRK type signal peptide; Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus. Pssm-ID: 428049 [Multi-domain] Cd Length: 26 Bit Score: 49.31 E-value: 2.98e-08
|
||||||||
YSIRK_signal | TIGR01168 | Gram-positive signal peptide, YSIRK family; Many surface proteins found in Streptococcus, ... |
17-49 | 3.21e-08 | ||||
Gram-positive signal peptide, YSIRK family; Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus. Pssm-ID: 273479 [Multi-domain] Cd Length: 39 Bit Score: 49.40 E-value: 3.21e-08
|
||||||||
MSCRAMM_ClfA | NF033609 | MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
18-163 | 3.06e-05 | ||||
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif. Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.44 E-value: 3.06e-05
|
||||||||
Agg_substance | NF033875 | LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
45-152 | 4.94e-04 | ||||
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain. Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 42.78 E-value: 4.94e-04
|
||||||||
lectin_L-type | cd01951 | legume lectins; The L-type (legume-type) lectins are a highly diverse family of carbohydrate ... |
201-370 | 8.96e-04 | ||||
legume lectins; The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely. Pssm-ID: 173886 [Multi-domain] Cd Length: 223 Bit Score: 40.49 E-value: 8.96e-04
|
||||||||
Name | Accession | Description | Interval | E-value | ||||
Bact_lectin | pfam18483 | Bacterial lectin; This entry primarily matches to legume-like lectin domains found in ... |
167-388 | 1.08e-41 | ||||
Bacterial lectin; This entry primarily matches to legume-like lectin domains found in prokaryotes. Pssm-ID: 465784 Cd Length: 211 Bit Score: 146.82 E-value: 1.08e-41
|
||||||||
YSIRK_signal | pfam04650 | YSIRK type signal peptide; Many surface proteins found in Streptococcus, Staphylococcus, and ... |
17-42 | 2.98e-08 | ||||
YSIRK type signal peptide; Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus. Pssm-ID: 428049 [Multi-domain] Cd Length: 26 Bit Score: 49.31 E-value: 2.98e-08
|
||||||||
YSIRK_signal | TIGR01168 | Gram-positive signal peptide, YSIRK family; Many surface proteins found in Streptococcus, ... |
17-49 | 3.21e-08 | ||||
Gram-positive signal peptide, YSIRK family; Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus. Pssm-ID: 273479 [Multi-domain] Cd Length: 39 Bit Score: 49.40 E-value: 3.21e-08
|
||||||||
MSCRAMM_ClfA | NF033609 | MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
18-163 | 3.06e-05 | ||||
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif. Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 46.44 E-value: 3.06e-05
|
||||||||
Agg_substance | NF033875 | LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
45-152 | 4.94e-04 | ||||
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain. Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 42.78 E-value: 4.94e-04
|
||||||||
lectin_L-type | cd01951 | legume lectins; The L-type (legume-type) lectins are a highly diverse family of carbohydrate ... |
201-370 | 8.96e-04 | ||||
legume lectins; The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely. Pssm-ID: 173886 [Multi-domain] Cd Length: 223 Bit Score: 40.49 E-value: 8.96e-04
|
||||||||
Blast search parameters | ||||
|