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Conserved domains on  [gi|581224770|gb|EVM38863|]
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transfer complex protein TraB [Staphylococcus aureus M0917]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
T4SS_CagC super family cl25215
Cag pathogenicity island, type IV secretory system; T4SS_CagC is a family of putative ...
 3-103 4.00e-10

Cag pathogenicity island, type IV secretory system; T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.


The actual alignment was detected with superfamily member pfam16943:

Pssm-ID: 374896  Cd Length: 119  Bit Score: 52.49  E-value: 4.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581224770    3 KKFSLTTVYVAFLSIVLSNITLGAE--NPGPKIEQGLQQVQTFLTGLIVAVGICAGVWIVLKKLPGI----DDPMVKNEM 76
Cdd:pfam16943   8 KALATLGATAITLGLMNAAVTLAADggEVKSKLTSAGKTIQGIIIGLLAIVGGCAALFIGIKGIADIwkiaDDIKEGQAT 87

                          90       100
                  ....*....|....*....|....*..
gi 581224770   77 FRGVGMVLAGVAVGAALVWLVPWVYNL 103
Cdd:pfam16943  88 VFAVAQPAALLALAAAIIWLLPWVYSL 114
 
Name Accession Description Interval E-value
T4SS_CagC pfam16943
Cag pathogenicity island, type IV secretory system; T4SS_CagC is a family of putative ...
 3-103 4.00e-10

Cag pathogenicity island, type IV secretory system; T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.


Pssm-ID: 374896  Cd Length: 119  Bit Score: 52.49  E-value: 4.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581224770    3 KKFSLTTVYVAFLSIVLSNITLGAE--NPGPKIEQGLQQVQTFLTGLIVAVGICAGVWIVLKKLPGI----DDPMVKNEM 76
Cdd:pfam16943   8 KALATLGATAITLGLMNAAVTLAADggEVKSKLTSAGKTIQGIIIGLLAIVGGCAALFIGIKGIADIwkiaDDIKEGQAT 87

                          90       100
                  ....*....|....*....|....*..
gi 581224770   77 FRGVGMVLAGVAVGAALVWLVPWVYNL 103
Cdd:pfam16943  88 VFAVAQPAALLALAAAIIWLLPWVYSL 114
 
Name Accession Description Interval E-value
T4SS_CagC pfam16943
Cag pathogenicity island, type IV secretory system; T4SS_CagC is a family of putative ...
 3-103 4.00e-10

Cag pathogenicity island, type IV secretory system; T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.


Pssm-ID: 374896  Cd Length: 119  Bit Score: 52.49  E-value: 4.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 581224770    3 KKFSLTTVYVAFLSIVLSNITLGAE--NPGPKIEQGLQQVQTFLTGLIVAVGICAGVWIVLKKLPGI----DDPMVKNEM 76
Cdd:pfam16943   8 KALATLGATAITLGLMNAAVTLAADggEVKSKLTSAGKTIQGIIIGLLAIVGGCAALFIGIKGIADIwkiaDDIKEGQAT 87

                          90       100
                  ....*....|....*....|....*..
gi 581224770   77 FRGVGMVLAGVAVGAALVWLVPWVYNL 103
Cdd:pfam16943  88 VFAVAQPAALLALAAAIIWLLPWVYSL 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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