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Conserved domains on  [gi|579919885|gb|EUZ57407|]
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hypothetical protein O548_00455 [Staphylococcus aureus M0471]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 18770923)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|22404999|21153002
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 101-359 2.14e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.95  E-value: 2.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 101 LEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVNgvnLFSRMADCSLQS 180
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAE---ALLELAQDYLKA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 181 GNYSDAIRLYDEINEDEMTSEDYLKK-AISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKE 259
Cdd:COG2956   90 GLLDRAEELLEKLLELDPDDAEALRLlAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 260 GLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMW 339
Cdd:COG2956  170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249

                        250       260
                 ....*....|....*....|
gi 579919885 340 HLAFAYGQEERDKEAQHFFE 359
Cdd:COG2956  250 ALADLLERKEGLEAALALLE 269
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-158 2.65e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 2.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  33 DALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSY---VEP-SPEKLMLEADLYQQ 108
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEaleLDPdEPEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 579919885 109 INMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLE 158
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 101-359 2.14e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.95  E-value: 2.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 101 LEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVNgvnLFSRMADCSLQS 180
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAE---ALLELAQDYLKA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 181 GNYSDAIRLYDEINEDEMTSEDYLKK-AISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKE 259
Cdd:COG2956   90 GLLDRAEELLEKLLELDPDDAEALRLlAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 260 GLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMW 339
Cdd:COG2956  170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249

                        250       260
                 ....*....|....*....|
gi 579919885 340 HLAFAYGQEERDKEAQHFFE 359
Cdd:COG2956  250 ALADLLERKEGLEAALALLE 269
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-403 5.50e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.72  E-value: 5.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885   58 LYHKYPDESELLIYFIEGLMSENQTDEAL----EYLSYVEPSPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIH 133
Cdd:TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALailnEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  134 FALAEMLYYDGQYLRATSEYETVLEtgeyqvngvnlfsrmadcsLQSGNYSDAIRLYDEINEDEMTSEdylkkaisydkn 213
Cdd:TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALE-------------------LKPDNTEAQIGLAQLLLAAKRTES------------ 687

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  214 ditqeAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLeIEHGDANEGVLLLKQ 293
Cdd:TIGR02917 688 -----AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL-LASGNTAEAVKTLEA 761

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  294 ALEVDNAYQEPLLILSDLYRNEEDY-EAIIELLTYVDEEDLDPTFMWHLAFAYGQEeRDKEAQHFFELAYPTMKTNIDFM 372
Cdd:TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYdKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAIL 840

                         330       340       350
                  ....*....|....*....|....*....|.
gi 579919885  373 SDYYFYLIEIGQKEQAITILNQLLELEPSNE 403
Cdd:TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 227-401 5.13e-10

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 60.59  E-value: 5.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 227 LSKDPDYIQGYL-YLQSLYENEKNYPDAIETGKE---------GLRLSQFYKELmyttGCLEIEHGDANEGVLLLKQALE 296
Cdd:PRK11788 133 LVDEGDFAEGALqQLLEIYQQEKDWQKAIDVAERleklggdslRVEIAHFYCEL----AQQALARGDLDAARALLKKALA 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 297 VDNAYQEPLLILSDLYRNEEDYEAIIELLTYVdeEDLDPTFMWH----LAFAYGQEERDKEAQHFFELAYPTmKTNIDFM 372
Cdd:PRK11788 209 ADPQCVRASILLGDLALAQGDYAAAIEALERV--EEQDPEYLSEvlpkLMECYQALGDEAEGLEFLRRALEE-YPGADLL 285

                        170       180
                 ....*....|....*....|....*....
gi 579919885 373 SDYYFYLIEIGQKEQAITILNQLLELEPS 401
Cdd:PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPS 314
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-158 2.65e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 2.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  33 DALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSY---VEP-SPEKLMLEADLYQQ 108
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEaleLDPdEPEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 579919885 109 INMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLE 158
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
PRK15179 PRK15179
Vi polysaccharide biosynthesis protein TviE; Provisional
 36-123 1.87e-05

Vi polysaccharide biosynthesis protein TviE; Provisional


Pssm-ID: 185101 [Multi-domain]  Cd Length: 694  Bit Score: 46.95  E-value: 1.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  36 FILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALE----YLSYVEPSPEKLMLEADLYQQINM 111
Cdd:PRK15179  90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAeielYFSGGSSSAREILLEAKSWDEIGQ 169

                         90
                 ....*....|..
gi 579919885 112 MEVAiDKLQEAL 123
Cdd:PRK15179 170 SEQA-DACFERL 180
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 101-359 2.14e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.95  E-value: 2.14e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 101 LEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVNgvnLFSRMADCSLQS 180
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAE---ALLELAQDYLKA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 181 GNYSDAIRLYDEINEDEMTSEDYLKK-AISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKE 259
Cdd:COG2956   90 GLLDRAEELLEKLLELDPDDAEALRLlAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 260 GLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMW 339
Cdd:COG2956  170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249

                        250       260
                 ....*....|....*....|
gi 579919885 340 HLAFAYGQEERDKEAQHFFE 359
Cdd:COG2956  250 ALADLLERKEGLEAALALLE 269
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-325 1.56e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.56  E-value: 1.56e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  71 YFIEGL--MSENQTDEALEYLSYV---EPSPEKLMLE-ADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDG 144
Cdd:COG2956   11 WYFKGLnyLLNGQPDKAIDLLEEAlelDPETVEAHLAlGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 145 QYLRATSEYETVLETGEYQVNgvnLFSRMADCSLQSGNYSDAIRLYDE-INEDEMTSEDYLKKAISYDKNDITQEAIKIM 223
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAE---ALRLLAEIYEQEGDWEKAIEVLERlLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 224 TTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEvDNAYQE 303
Cdd:COG2956  168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE-LDPSDD 246

                        250       260
                 ....*....|....*....|..
gi 579919885 304 PLLILSDLYRNEEDYEAIIELL 325
Cdd:COG2956  247 LLLALADLLERKEGLEAALALL 268
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 26-262 3.99e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 3.99e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  26 AITTDNDDALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSYVEPSPEK----LML 101
Cdd:COG2956   36 ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDdaeaLRL 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 102 EADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLetgEYQVNGVNLFSRMADCSLQSG 181
Cdd:COG2956  116 LAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL---KLDPDCARALLLLAELYLEQG 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 182 NYSDAIRLYDEI-NEDEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQgYLYLQSLYENEKNYPDAIETGKEG 260
Cdd:COG2956  193 DYEEAIAALERAlEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQ 271


                 ..
gi 579919885 261 LR 262
Cdd:COG2956  272 LR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 203-412 7.21e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 7.21e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 203 YLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHG 282
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 283 DANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMWH-LAFAYGQEERDKEAQHFFELA 361
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCeLAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 579919885 362 YPTMKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENWHDELSRL 412
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-230 5.66e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.60  E-value: 5.66e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  30 DNDDALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLS-YVEPSPEK---LMLEADL 105
Cdd:COG2956   74 DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLErLLKLGPENahaYCELAEL 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 106 YQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLetgEYQVNGVNLFSRMADCSLQSGNYSD 185
Cdd:COG2956  154 YLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERAL---EQDPDYLPALPRLAELYEKLGDPEE 230

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 579919885 186 AIRLYDEINEDEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKD 230
Cdd:COG2956  231 ALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-362 2.37e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 2.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 123 LELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEyqvNGVNLFSRMADCSLQSGNYSDAIRLYDE-INEDEMTSE 201
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDP---DDAEALYNLGLAYLRLGRYEEALADYEQaLELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 202 DYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEH 281
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 282 GDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELA 361
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237


                 .
gi 579919885 362 Y 362
Cdd:COG0457  238 L 238
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
103-333 5.25e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 62.33  E-value: 5.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 103 ADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETgeyQVNGVNLFSRMADCSLQSGN 182
Cdd:COG0457   15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL---DPDDAEALNNLGLALQALGR 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 183 YSDAIRLYDEINE-DEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGL 261
Cdd:COG0457   92 YEEALEDYDKALElDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 579919885 262 RLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDL 333
Cdd:COG0457  172 AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQY 243
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 58-403 5.50e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.72  E-value: 5.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885   58 LYHKYPDESELLIYFIEGLMSENQTDEAL----EYLSYVEPSPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIH 133
Cdd:TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALailnEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALAL 638

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  134 FALAEMLYYDGQYLRATSEYETVLEtgeyqvngvnlfsrmadcsLQSGNYSDAIRLYDEINEDEMTSEdylkkaisydkn 213
Cdd:TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALE-------------------LKPDNTEAQIGLAQLLLAAKRTES------------ 687

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  214 ditqeAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLeIEHGDANEGVLLLKQ 293
Cdd:TIGR02917 688 -----AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL-LASGNTAEAVKTLEA 761

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  294 ALEVDNAYQEPLLILSDLYRNEEDY-EAIIELLTYVDEEDLDPTFMWHLAFAYGQEeRDKEAQHFFELAYPTMKTNIDFM 372
Cdd:TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYdKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLAPNIPAIL 840

                         330       340       350
                  ....*....|....*....|....*....|.
gi 579919885  373 SDYYFYLIEIGQKEQAITILNQLLELEPSNE 403
Cdd:TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 227-401 5.13e-10

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 60.59  E-value: 5.13e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 227 LSKDPDYIQGYL-YLQSLYENEKNYPDAIETGKE---------GLRLSQFYKELmyttGCLEIEHGDANEGVLLLKQALE 296
Cdd:PRK11788 133 LVDEGDFAEGALqQLLEIYQQEKDWQKAIDVAERleklggdslRVEIAHFYCEL----AQQALARGDLDAARALLKKALA 208

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 297 VDNAYQEPLLILSDLYRNEEDYEAIIELLTYVdeEDLDPTFMWH----LAFAYGQEERDKEAQHFFELAYPTmKTNIDFM 372
Cdd:PRK11788 209 ADPQCVRASILLGDLALAQGDYAAAIEALERV--EEQDPEYLSEvlpkLMECYQALGDEAEGLEFLRRALEE-YPGADLL 285

                        170       180
                 ....*....|....*....|....*....
gi 579919885 373 SDYYFYLIEIGQKEQAITILNQLLELEPS 401
Cdd:PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRRHPS 314
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-404 1.55e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.10  E-value: 1.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885   13 LQKLENLDSRVN--EAITTDNDDALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLS 90
Cdd:TIGR02917 308 LGNLEQAYQYLNqiLKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885   91 YV-EPSPEKLMLEADLyQQINMM----EVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVN 165
Cdd:TIGR02917 388 KAtELDPENAAARTQL-GISKLSqgdpSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS 466

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  166 GVNLFS----------------RMAdCSLQSGNYSDAIRL--YDEINEDEMTSEDYLKKAISYDKNDI------------ 215
Cdd:TIGR02917 467 LHNLLGaiylgkgdlakareafEKA-LSIEPDFFPAAANLarIDIQEGNPDDAIQRFEKVLTIDPKNLrailalaglylr 545

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  216 ---TQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLK 292
Cdd:TIGR02917 546 tgnEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  293 QALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPT----FMWHLAFAYGQEERDKEAQHFFELAYPTMKTN 368
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTeaqiGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG 705

                         410       420       430
                  ....*....|....*....|....*....|....*.
gi 579919885  369 IDFMSDYYFyliEIGQKEQAITILNQLLELEPSNEN 404
Cdd:TIGR02917 706 FELEGDLYL---RQKDYPAAIQAYRKALKRAPSSQN 738
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 23-413 3.94e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.56  E-value: 3.94e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885   23 VNEAITTD--NDDALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYL----SYVEPSP 96
Cdd:TIGR02917 182 IDEVLTADpgNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHAdallKKAPNSP 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885   97 EKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVN----------- 165
Cdd:TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQarrllasiqlr 341

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  166 ------GVNLFSRMADCS--------------LQSGNYSDAIRLYDEINEDEMTSED-YLKKAISY-DKNDITqEAIKIM 223
Cdd:TIGR02917 342 lgrvdeAIATLSPALGLDpddpaalsllgeayLALGDFEKAAEYLAKATELDPENAAaRTQLGISKlSQGDPS-EAIADL 420

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  224 TTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEgLRLSQFYKELMYTT-GCLEIEHGDANEGVLLLKQALEVDNAYQ 302
Cdd:TIGR02917 421 ETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK-LEKKQPDNASLHNLlGAIYLGKGDLAKAREAFEKALSIEPDFF 499

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  303 EPLLILSDLYRNEEDYEAIIELLTYV---DEEDLDPtfMWHLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMSDYYFYL 379
Cdd:TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVltiDPKNLRA--ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577

                         410       420       430
                  ....*....|....*....|....*....|....
gi 579919885  380 IEIGQKEQAITILNQLLELEPSNENWHDELSRLQ 413
Cdd:TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 95-193 8.50e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 8.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  95 SPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETgeyQVNGVNLFSRMA 174
Cdd:COG4235   16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL---DPDNPEALYLLG 92

                         90
                 ....*....|....*....
gi 579919885 175 DCSLQSGNYSDAIRLYDEI 193
Cdd:COG4235   93 LAAFQQGDYAEAIAAWQKL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 201-325 9.64e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 9.64e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 201 EDYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIE 280
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 579919885 281 HGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELL 325
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
203-413 1.62e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.01  E-value: 1.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 203 YLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHG 282
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 283 DANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMW-HLAFAYGQEERDKEAQHFFELA 361
Cdd:COG0457   91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALyNLGIALEKLGRYEEALELLEKL 170

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 579919885 362 YPTMKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENWHDELSRLQ 413
Cdd:COG0457  171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
26-267 1.63e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.01  E-value: 1.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  26 AITTDNDDALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSYV---EP-SPEKLML 101
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAlelDPdDAEALNN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 102 EADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLetgEYQVNGVNLFSRMADCSLQSG 181
Cdd:COG0457   82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERAL---ELDPDDADALYNLGIALEKLG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 182 NYSDAIRLYDEINEDEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGL 261
Cdd:COG0457  159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238


                 ....*.
gi 579919885 262 RLSQFY 267
Cdd:COG0457  239 ALYQYR 244
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 236-402 4.81e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 4.81e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 236 GYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNE 315
Cdd:COG2956   10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 316 EDY-EAIIELLTYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMSDYYFYLIEIGQKEQAITILNQ 394
Cdd:COG2956   90 GLLdRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169


                 ....*...
gi 579919885 395 LLELEPSN 402
Cdd:COG2956  170 ALKLDPDC 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 97-233 7.44e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 7.44e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  97 EKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLetgEYQVNGVNLFSRMADC 176
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEAL---ELDPDEPEARLNLGLA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 579919885 177 SLQSGNYSDAIRLYDE-INEDEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKDPDY 233
Cdd:COG4783   82 LLKAGDYDEALALLEKaLKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 133-264 2.25e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 2.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 133 HFALAEMLYYDGQYLRATSEYETVLETgeyQVNGVNLFSRMADCSLQSGNYSDAIRLYDE-INEDEMTSEDYLKKAISYD 211
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALEL---DPDNPEAFALLGEILLQLGDLDEAIVLLHEaLELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 579919885 212 KNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLS 264
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 218-325 2.60e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.23  E-value: 2.60e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 218 EAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEV 297
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100
                 ....*....|....*....|....*...
gi 579919885 298 DNAYQEPLLILSDLYRNEEDYEAIIELL 325
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAW 108
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-158 2.65e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 2.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  33 DALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSY---VEP-SPEKLMLEADLYQQ 108
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEaleLDPdEPEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 579919885 109 INMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLE 158
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
227-414 2.80e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 2.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 227 LSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLL 306
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 307 ILSDLYRNEEDYEAIIELLTYVDEED-LDPTFMWHLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMSDYYFYLIEIGQK 385
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDpDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                        170       180
                 ....*....|....*....|....*....
gi 579919885 386 EQAITILNQLLELEPSNENWHDELSRLQS 414
Cdd:COG0457  161 EEALELLEKLEAAALAALLAAALGEAALA 189
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 272-413 3.03e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 3.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 272 YTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYE-AIIELLTYVDEEDLDPTFMWHLAFAYGQEER 350
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDrAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 579919885 351 DKEAQHFFELAYPTMKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENWHDELSRLQ 413
Cdd:COG2956   92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY 154
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 26-158 4.72e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.92  E-value: 4.72e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  26 AITTDNDDALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLsyvepspeklmleadl 105
Cdd:COG3914  106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL---------------- 169

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 579919885 106 yqqinmmevaidklQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLE 158
Cdd:COG3914  170 --------------RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 76-195 5.56e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 5.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  76 LMSENQTDEALEYL-SYVEPSPEK---LMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATS 151
Cdd:COG4783   14 LLLAGDYDEAEALLeKALELDPDNpeaFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 579919885 152 EYETVLETGEyqvNGVNLFSRMADCSLQSGNYSDAIRLYDEINE 195
Cdd:COG4783   94 LLEKALKLDP---EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 115-264 7.16e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 7.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 115 AIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLetgEYQVNGVNLFSRMADCSLQSGNYSDAIRLYDEIn 194
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKAL---RLDPDNADALLDLAEALLAAGDTEEAEELLERA- 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 195 edemtsedylkkaisydknditqeaikimttlLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLS 264
Cdd:COG4235   78 --------------------------------LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 30-129 1.53e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 1.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  30 DNDDALFILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSYV----EPSPEKLMLEADL 105
Cdd:COG4783   36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAlkldPEHPEAYLRLARA 115

                         90       100
                 ....*....|....*....|....
gi 579919885 106 YQQINMMEVAIDKLQEALELEPND 129
Cdd:COG4783  116 YRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 63-159 2.11e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 2.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  63 PDESELLIYFIEGLMSENQTDEALEYLSYV----EPSPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAE 138
Cdd:COG4235   14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKAlrldPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                         90       100
                 ....*....|....*....|.
gi 579919885 139 MLYYDGQYLRATSEYETVLET 159
Cdd:COG4235   94 AAFQQGDYAEAIAAWQKLLAL 114
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 101-263 2.87e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.61  E-value: 2.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 101 LEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLEtgeYQVNGVNLFSRMADCSLQS 180
Cdd:COG3914   83 LAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALA---LNPDFAEAYLNLGEALRRL 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 181 GNYSDAIRLYdeinedemtsedylkkaisydknditQEAIKImttllskDPDYIQGYLYLQSLYENEKNYPDAIETGKEG 260
Cdd:COG3914  160 GRLEEAIAAL--------------------------RRALEL-------DPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206


                 ...
gi 579919885 261 LRL 263
Cdd:COG3914  207 LEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 217-387 8.18e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 8.18e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 217 QEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALE 296
Cdd:COG3914   95 EEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 297 VDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEedLDPTFMW---HLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMS 373
Cdd:COG3914  175 LDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE--LDPDNADahsNLLFALRQACDWEVYDRFEELLAALARGPSELSP 252

                        170
                 ....*....|....
gi 579919885 374 DYYFYLIEIGQKEQ 387
Cdd:COG3914  253 FALLYLPDDDPAEL 266
PRK15179 PRK15179
Vi polysaccharide biosynthesis protein TviE; Provisional
 36-123 1.87e-05

Vi polysaccharide biosynthesis protein TviE; Provisional


Pssm-ID: 185101 [Multi-domain]  Cd Length: 694  Bit Score: 46.95  E-value: 1.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  36 FILGETLYNFGLMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALE----YLSYVEPSPEKLMLEADLYQQINM 111
Cdd:PRK15179  90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAeielYFSGGSSSAREILLEAKSWDEIGQ 169

                         90
                 ....*....|..
gi 579919885 112 MEVAiDKLQEAL 123
Cdd:PRK15179 170 SEQA-DACFERL 180
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 243-361 2.29e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 2.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 243 LYENEKNYPDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDY-EAI 321
Cdd:COG4783   13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYdEAL 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 579919885 322 IELLTYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELA 361
Cdd:COG4783   93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 269-402 2.86e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 2.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 269 ELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDY-EAIIELLTYVDEEDLDPTFMWHLAFAYGQ 347
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLdEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 579919885 348 EERDKEAQHFFELAyptMKTNIDFMSDYYFY---LIEIGQKEQAITILNQLLELEPSN 402
Cdd:COG4783   85 AGDYDEALALLEKA---LKLDPEHPEAYLRLaraYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 286-405 4.47e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 4.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 286 EGVLLLKQALEVDNAYQEPLLILSDLYRNEEDY-EAIIELLTYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELAYPT 364
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYdEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 579919885 365 MKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENW 405
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 172-298 5.38e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 5.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 172 RMADCSLQSGNYSDAIRLYDEINEDEMTSED-YLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNY 250
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKALELDPDNPEaFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 579919885 251 PDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVD 298
Cdd:COG4783   89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 93-402 6.57e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 6.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885   93 EPSPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEYQVNGVNLFSR 172
Cdd:TIGR02917  19 DQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAR 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  173 MAdcsLQSGNYSDAIRLYDE--INEDEMTSEDYLKKAISYDKNDITQEAIKIMTTLLSKDPDYIQGYLYLQSLYENEKNY 250
Cdd:TIGR02917  99 AY---LLQGKFQQVLDELPGktLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  251 PDAIETGKEGLRLSQFYKELMYTTGCLEIEHGDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEaiiELLTYVDE 330
Cdd:TIGR02917 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFE---EAEKHADA 252

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 579919885  331 edLDPTFMWHLAFAYGQ---EERDKEAQHFFELAYPTMKTNIDFM-SDYYFYLIEI--GQKEQAITILNQLLELEPSN 402
Cdd:TIGR02917 253 --LLKKAPNSPLAHYLKalvDFQKKNYEDARETLQDALKSAPEYLpALLLAGASEYqlGNLEQAYQYLNQILKYAPNS 328
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
105-192 7.30e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 7.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 105 LYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATsEYETVLetgEYQVNGVNLFSRMADCSLQSGNYS 184
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKAL---KLDPNNAEALLNLAELLLELGDYD 76


                 ....*...
gi 579919885 185 DAIRLYDE 192
Cdd:COG3063   77 EALAYLER 84
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 282-406 8.57e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 8.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 282 GDANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEedLDPTF--MWH-LAFAYGQEERDKEAQHFF 358
Cdd:COG3914   92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALA--LNPDFaeAYLnLGEALRRLGRLEEAIAAL 169

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 579919885 359 ELAYPTMKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENWH 406
Cdd:COG3914  170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 47-192 1.95e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 1.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  47 LMPQGLEVFRVLYHKYPDESELLIYFIEGLMSENQTDEALEYLSYVEPSPEKLMLEADLYQQINMMEVAIDKLQEALELE 126
Cdd:COG5010    5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 579919885 127 PNDPIIHFALAEMLYYDGQYLRATSEYETVLETGEyqvNGVNLFSRMADCSLQSGNYSDAIRLYDE 192
Cdd:COG5010   85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSP---DNPNAYSNLAALLLSLGQDDEAKAALQR 147
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 115-196 1.13e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 115 AIDKLQEALELEPNDPII---HFALAEMLYYDGQYLRATSEYETVLETGEYQVNGVNLFSRMADCSLQSGNYSDAIRLYD 191
Cdd:COG1729   12 AIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLE 91


                 ....*
gi 579919885 192 EINED 196
Cdd:COG1729   92 ELIKK 96
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
76-158 1.36e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  76 LMSENQTDEALEYLSYV---EPS-PEKLMLEADLYQQINMMEVAIdKLQEALELEPNDPIIHFALAEMLYYDGQYLRATS 151
Cdd:COG3063    2 YLKLGDLEEAEEYYEKAlelDPDnADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                 ....*..
gi 579919885 152 EYETVLE 158
Cdd:COG3063   81 YLERALE 87
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 302-412 1.72e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 302 QEPLLILSDLYRNEEDYEAIIELL-TYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELAYPTMKTNIDFMSDYYFYLI 380
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLeKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110
                 ....*....|....*....|....*....|..
gi 579919885 381 EIGQKEQAITILNQLLELEPSNENWHDELSRL 412
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 283-412 2.71e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 2.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885 283 DANEGVLLLKQALEVDNAYQEPLLILSDLYRNEEDYEAIIELLTYVDEEDLDPTFMWHLAFAYGQEERDKEAQHFFELAY 362
Cdd:COG5010    2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 579919885 363 PTMKTNIDFMSDYYFYLIEIGQKEQAITILNQLLELEPSNENWHDELSRL 412
Cdd:COG5010   82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 76-158 7.51e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 36.86  E-value: 7.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579919885  76 LMSENQTDEALEYLSYV----EPSPEKLMLEADLYQQINMMEVAIDKLQEALELEPNDPIIHFALAEMLYYDGQYLRATS 151
Cdd:COG5010   64 YNKLGDFEESLALLEQAlqldPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143


                 ....*..
gi 579919885 152 EYETVLE 158
Cdd:COG5010  144 ALQRALG 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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