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Conserved domains on  [gi|579698079|gb|EUX41896|]
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hypothetical protein O458_02739, partial [Staphylococcus aureus M0338]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ANT super family cl47808
Phage antirepressor protein KilAC domain; This domain was called the KilAC domain by Iyer and ...
 1-30 1.00e-08

Phage antirepressor protein KilAC domain; This domain was called the KilAC domain by Iyer and colleagues.


The actual alignment was detected with superfamily member pfam03374:

Pssm-ID: 460903  Cd Length: 105  Bit Score: 45.64  E-value: 1.00e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 579698079    1 THSDGHTSISKTPKVTGKGQQYFVNKFLGE 30
Cdd:pfam03374  76 THSDGSEHIKTQTKVTPKGQLFLYNLLKKE 105
 
Name Accession Description Interval E-value
ANT pfam03374
Phage antirepressor protein KilAC domain; This domain was called the KilAC domain by Iyer and ...
 1-30 1.00e-08

Phage antirepressor protein KilAC domain; This domain was called the KilAC domain by Iyer and colleagues.


Pssm-ID: 460903  Cd Length: 105  Bit Score: 45.64  E-value: 1.00e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 579698079    1 THSDGHTSISKTPKVTGKGQQYFVNKFLGE 30
Cdd:pfam03374  76 THSDGSEHIKTQTKVTPKGQLFLYNLLKKE 105
KilAC COG3645
Phage antirepressor protein YoqD, KilAC domain [Mobilome: prophages, transposons];
1-31 1.12e-07

Phage antirepressor protein YoqD, KilAC domain [Mobilome: prophages, transposons];


Pssm-ID: 442862 [Multi-domain]  Cd Length: 249  Bit Score: 44.67  E-value: 1.12e-07
                         10        20        30
                 ....*....|....*....|....*....|.
gi 579698079   1 THSDGHTSISKTPKVTGKGQQYFVNKFLGEK 31
Cdd:COG3645  215 TDPDGNEHVSTQTRVTPKGRAYLAELLAEEG 245
 
Name Accession Description Interval E-value
ANT pfam03374
Phage antirepressor protein KilAC domain; This domain was called the KilAC domain by Iyer and ...
 1-30 1.00e-08

Phage antirepressor protein KilAC domain; This domain was called the KilAC domain by Iyer and colleagues.


Pssm-ID: 460903  Cd Length: 105  Bit Score: 45.64  E-value: 1.00e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 579698079    1 THSDGHTSISKTPKVTGKGQQYFVNKFLGE 30
Cdd:pfam03374  76 THSDGSEHIKTQTKVTPKGQLFLYNLLKKE 105
KilAC COG3645
Phage antirepressor protein YoqD, KilAC domain [Mobilome: prophages, transposons];
1-31 1.12e-07

Phage antirepressor protein YoqD, KilAC domain [Mobilome: prophages, transposons];


Pssm-ID: 442862 [Multi-domain]  Cd Length: 249  Bit Score: 44.67  E-value: 1.12e-07
                         10        20        30
                 ....*....|....*....|....*....|.
gi 579698079   1 THSDGHTSISKTPKVTGKGQQYFVNKFLGEK 31
Cdd:COG3645  215 TDPDGNEHVSTQTRVTPKGRAYLAELLAEEG 245
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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