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Conserved domains on  [gi|579463253|gb|EUV11480|]
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AraC family transcriptional regulator [Staphylococcus aureus M0194]

Protein Classification

AraC family transcriptional regulator( domain architecture ID 11454411)

AraC family transcriptional regulator containing a cupin domain as its effector domain and an AraC family helix-turn-helix (HTH) DNA binding domain, controls the expression of genes with diverse biological functions including metabolism, stress response, and virulence

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GlxA super family cl34854
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 136-254 2.17e-25

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


The actual alignment was detected with superfamily member COG4977:

Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 107.55  E-value: 2.17e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 136 HMIHYVPRTYHSNQSIL-------NDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTR 208
Cdd:COG4977  184 RLVVDPRRPGGQAQFSPllvplghRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLR 263

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 579463253 209 IEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:COG4977  264 LERARRLLETTDLSIEEIAAACGFGSASHFRRAFRRRFGVSPSAYR 309
XynB super family cl42385
Beta-xylosidase [Carbohydrate transport and metabolism];
524-741 2.03e-07

Beta-xylosidase [Carbohydrate transport and metabolism];


The actual alignment was detected with superfamily member COG3664:

Pssm-ID: 442881  Cd Length: 490  Bit Score: 54.15  E-value: 2.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 524 PLILLNWNT-LTGDTFITNGeYFRGGIIIEQLLKLSTKVEGIGYWLNYDLHvshcrnErDYMNSIELFH------QYNG- 595
Cdd:COG3664  279 PLHITEWNTsYTPRDPYHDT-AFYAAYIAKSLKRAGDLADSMSYWTFSDIF------E-EAGPPTQPFHggfgllNTNGi 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 596 KRPVYFTALLFNKLTSNILYSDDTCIVTGTDS--NFQILLYDakhfnpyLALDNQMNMRATemIHLNINALEDGMYKIKH 673
Cdd:COG3664  351 KKPVYHAFRMLNRLGGERLAVGDDDAVATRDDdgRVAVLVWN-------YHDDDPAGPART--VELTLTGLPAGKYRLTV 421

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 579463253 674 FTLDKENGALFNLWRKhhtihgM------DKDSIDYVNRMSFPKLEVYDIDITD-TLALNIKMITNGIHLIEVKR 741
Cdd:COG3664  422 YRVDEEHGNAYAAWLE------MgspqqpTREQIAELKAAAELQTSPEVVVVADgKLTLDLTLPRNSVVLIELTP 490
 
Name Accession Description Interval E-value
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 136-254 2.17e-25

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 107.55  E-value: 2.17e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 136 HMIHYVPRTYHSNQSIL-------NDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTR 208
Cdd:COG4977  184 RLVVDPRRPGGQAQFSPllvplghRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLR 263

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 579463253 209 IEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:COG4977  264 LERARRLLETTDLSIEEIAAACGFGSASHFRRAFRRRFGVSPSAYR 309
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
171-254 2.93e-25

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 99.93  E-value: 2.93e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253   171 DLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTP 250
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ....
gi 579463253   251 KQYR 254
Cdd:smart00342  81 SEYR 84
HTH_18 pfam12833
Helix-turn-helix domain;
177-254 9.37e-22

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 89.57  E-value: 9.37e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 579463253  177 LSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTY-TDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEdTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYR 79
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
92-254 2.20e-13

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 71.54  E-value: 2.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253  92 LTDATTTKNIHQLrniMARLVSTHIRHNELSKLTEQQLVIQLLMHMIHYVPRtyhSNQSILnDDKVNQVCDYIELHFHED 171
Cdd:PRK10572 127 IPDEALQPEFSDL---FGQIEQAGQSEGRYSELLAMNLLERLLLRCMEAIPE---SLHPPM-DPRVREACQYISDHLASE 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 172 LSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPK 251
Cdd:PRK10572 200 FDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGASPS 279


                 ...
gi 579463253 252 QYR 254
Cdd:PRK10572 280 EFR 282
adjacent_YSIRK TIGR04094
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only ...
 157-254 1.15e-10

YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain.


Pssm-ID: 274977 [Multi-domain]  Cd Length: 383  Bit Score: 63.93  E-value: 1.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253  157 VNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLdLTYTDETITDIALQNGFSSAA 236
Cdd:TIGR04094 287 IRAVIQYINLNLYDPLKVEEIAKQFFMSESKLRKLFKKEMGISIQEYISKRKIEEAKY-LLRSQIPVSEVSNELGFYDLS 365

                          90
                  ....*....|....*...
gi 579463253  237 SFARTFKHFTHQTPKQYR 254
Cdd:TIGR04094 366 HFSRTFKKHTGVSPKQYQ 383
XynB COG3664
Beta-xylosidase [Carbohydrate transport and metabolism];
524-741 2.03e-07

Beta-xylosidase [Carbohydrate transport and metabolism];


Pssm-ID: 442881  Cd Length: 490  Bit Score: 54.15  E-value: 2.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 524 PLILLNWNT-LTGDTFITNGeYFRGGIIIEQLLKLSTKVEGIGYWLNYDLHvshcrnErDYMNSIELFH------QYNG- 595
Cdd:COG3664  279 PLHITEWNTsYTPRDPYHDT-AFYAAYIAKSLKRAGDLADSMSYWTFSDIF------E-EAGPPTQPFHggfgllNTNGi 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 596 KRPVYFTALLFNKLTSNILYSDDTCIVTGTDS--NFQILLYDakhfnpyLALDNQMNMRATemIHLNINALEDGMYKIKH 673
Cdd:COG3664  351 KKPVYHAFRMLNRLGGERLAVGDDDAVATRDDdgRVAVLVWN-------YHDDDPAGPART--VELTLTGLPAGKYRLTV 421

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 579463253 674 FTLDKENGALFNLWRKhhtihgM------DKDSIDYVNRMSFPKLEVYDIDITD-TLALNIKMITNGIHLIEVKR 741
Cdd:COG3664  422 YRVDEEHGNAYAAWLE------MgspqqpTREQIAELKAAAELQTSPEVVVVADgKLTLDLTLPRNSVVLIELTP 490
 
Name Accession Description Interval E-value
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 136-254 2.17e-25

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 107.55  E-value: 2.17e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 136 HMIHYVPRTYHSNQSIL-------NDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTR 208
Cdd:COG4977  184 RLVVDPRRPGGQAQFSPllvplghRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLR 263

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 579463253 209 IEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:COG4977  264 LERARRLLETTDLSIEEIAAACGFGSASHFRRAFRRRFGVSPSAYR 309
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
171-254 2.93e-25

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 99.93  E-value: 2.93e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253   171 DLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTP 250
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ....
gi 579463253   251 KQYR 254
Cdd:smart00342  81 SEYR 84
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
47-254 3.29e-22

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 96.77  E-value: 3.29e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253  47 GDIFIINHRDLYRFQLQQDGIICYIQFQMKYLADKFDDAHCLYFHLTDATTTKNIHQLRNIMARLVSTHIRHNELSKLTE 126
Cdd:COG2207   55 GGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRAL 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 127 QQLVIQLLMHMIHYVPRTYHSNQSILnddkvnqvcdyIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNT 206
Cdd:COG2207  135 ELLLLLLLLLLLLLLLLLLLLLLLLL-----------LLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRE 203

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 579463253 207 TRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:COG2207  204 LRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYR 251
HTH_18 pfam12833
Helix-turn-helix domain;
177-254 9.37e-22

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 89.57  E-value: 9.37e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 579463253  177 LSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTY-TDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEdTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYR 79
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 153-254 4.78e-21

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 95.51  E-value: 4.78e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 153 NDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTyTDETITDIALQNGF 232
Cdd:COG2169   82 RADLVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQ-TGLSVTDAAYAAGF 160

                         90       100
                 ....*....|....*....|..
gi 579463253 233 SSAASFARTFKHFTHQTPKQYR 254
Cdd:COG2169  161 GSLSRFYEAFKKLLGMTPSAYR 182
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
92-254 2.20e-13

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 71.54  E-value: 2.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253  92 LTDATTTKNIHQLrniMARLVSTHIRHNELSKLTEQQLVIQLLMHMIHYVPRtyhSNQSILnDDKVNQVCDYIELHFHED 171
Cdd:PRK10572 127 IPDEALQPEFSDL---FGQIEQAGQSEGRYSELLAMNLLERLLLRCMEAIPE---SLHPPM-DPRVREACQYISDHLASE 199

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 172 LSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPK 251
Cdd:PRK10572 200 FDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGASPS 279


                 ...
gi 579463253 252 QYR 254
Cdd:PRK10572 280 EFR 282
PRK10371 PRK10371
transcriptional regulator MelR;
109-254 3.15e-13

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 71.00  E-value: 3.15e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 109 ARLVSTH-IR--HNELSKLTEQ--QLVIQLLMHMIHYV------------PRTYHSNQsiLNDDK---VNQVCDYIELHF 168
Cdd:PRK10371 127 TQQLSPFeVRrwQQELNSPNEQirQLAIDEIGLMLKRFslsgwepilvnkTSRTHKNS--VSRHAqfyVSQMLGFIAENY 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 169 HEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQ 248
Cdd:PRK10371 205 DQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGM 284


                 ....*.
gi 579463253 249 TPKQYR 254
Cdd:PRK10371 285 SPQQYR 290
adjacent_YSIRK TIGR04094
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only ...
 157-254 1.15e-10

YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain.


Pssm-ID: 274977 [Multi-domain]  Cd Length: 383  Bit Score: 63.93  E-value: 1.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253  157 VNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLdLTYTDETITDIALQNGFSSAA 236
Cdd:TIGR04094 287 IRAVIQYINLNLYDPLKVEEIAKQFFMSESKLRKLFKKEMGISIQEYISKRKIEEAKY-LLRSQIPVSEVSNELGFYDLS 365

                          90
                  ....*....|....*...
gi 579463253  237 SFARTFKHFTHQTPKQYR 254
Cdd:TIGR04094 366 HFSRTFKKHTGVSPKQYQ 383
PRK11511 PRK11511
MDR efflux pump AcrAB transcriptional activator MarA;
157-254 1.29e-09

MDR efflux pump AcrAB transcriptional activator MarA;


Pssm-ID: 236920 [Multi-domain]  Cd Length: 127  Bit Score: 56.65  E-value: 1.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 157 VNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAA 236
Cdd:PRK11511  11 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQ 90

                         90
                 ....*....|....*...
gi 579463253 237 SFARTFKHFTHQTPKQYR 254
Cdd:PRK11511  91 TLTRTFKNYFDVPPHKYR 108
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
151-254 4.24e-09

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 54.55  E-value: 4.24e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 151 ILNDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQN 230
Cdd:PRK10219   1 MSHQKIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDL 80

                         90       100
                 ....*....|....*....|....
gi 579463253 231 GFSSAASFARTFKHFTHQTPKQYR 254
Cdd:PRK10219  81 GYVSQQTFSRVFRRQFDRTPSDYR 104
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
153-262 5.75e-08

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 54.68  E-value: 5.75e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 153 NDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGF 232
Cdd:PRK13503 169 SDARLNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGF 248

                         90       100       110
                 ....*....|....*....|....*....|
gi 579463253 233 SSAASFARTFKHFTHQTPKQYRGDRPAITE 262
Cdd:PRK13503 249 GDSNHFSTLFRREFSWSPRDIRQGRDGFLQ 278
PRK15121 PRK15121
MDR efflux pump AcrAB transcriptional activator RobA;
163-260 1.62e-07

MDR efflux pump AcrAB transcriptional activator RobA;


Pssm-ID: 185076 [Multi-domain]  Cd Length: 289  Bit Score: 53.47  E-value: 1.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 163 YIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTF 242
Cdd:PRK15121  13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQQTFTRAF 92

                         90       100
                 ....*....|....*....|....*.
gi 579463253 243 KHFTHQTPKQYR--------GDRPAI 260
Cdd:PRK15121  93 KKQFAQTPALYRrspewsafGIRPPI 118
XynB COG3664
Beta-xylosidase [Carbohydrate transport and metabolism];
524-741 2.03e-07

Beta-xylosidase [Carbohydrate transport and metabolism];


Pssm-ID: 442881  Cd Length: 490  Bit Score: 54.15  E-value: 2.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 524 PLILLNWNT-LTGDTFITNGeYFRGGIIIEQLLKLSTKVEGIGYWLNYDLHvshcrnErDYMNSIELFH------QYNG- 595
Cdd:COG3664  279 PLHITEWNTsYTPRDPYHDT-AFYAAYIAKSLKRAGDLADSMSYWTFSDIF------E-EAGPPTQPFHggfgllNTNGi 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 596 KRPVYFTALLFNKLTSNILYSDDTCIVTGTDS--NFQILLYDakhfnpyLALDNQMNMRATemIHLNINALEDGMYKIKH 673
Cdd:COG3664  351 KKPVYHAFRMLNRLGGERLAVGDDDAVATRDDdgRVAVLVWN-------YHDDDPAGPART--VELTLTGLPAGKYRLTV 421

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 579463253 674 FTLDKENGALFNLWRKhhtihgM------DKDSIDYVNRMSFPKLEVYDIDITD-TLALNIKMITNGIHLIEVKR 741
Cdd:COG3664  422 YRVDEEHGNAYAAWLE------MgspqqpTREQIAELKAAAELQTSPEVVVVADgKLTLDLTLPRNSVVLIELTP 490
ftrA PRK09393
transcriptional activator FtrA; Provisional
 159-254 2.75e-07

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 53.04  E-value: 2.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 159 QVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASF 238
Cdd:PRK09393 222 PLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSEESL 301

                         90
                 ....*....|....*.
gi 579463253 239 ARTFKHFTHQTPKQYR 254
Cdd:PRK09393 302 RHHFRRRAATSPAAYR 317
PRK13501 PRK13501
HTH-type transcriptional activator RhaR;
47-254 1.54e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184092 [Multi-domain]  Cd Length: 290  Bit Score: 50.67  E-value: 1.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253  47 GDIFIINHRDLYRFQ----LQQDGII-CYIQFQM-----KYLADKFDDAHCLYFHLTdattTKNIHQLRNIMARLVSTHI 116
Cdd:PRK13501  63 GDVFYIQAADHHSYEsvhdLVLDNIIyCPERLHLnaqwhKLLPPLGPEQNQGYWRLT----TQGMAQARPIIQQLAQESR 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 117 RHNELSKLTEQQLVIQLLMHMIHYVPRTYHSNQsILNDDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESL 196
Cdd:PRK13501 139 KTDSWSIQLTEVLLLQLAIVLKRHRYRAEQAHL-LPDGEQLDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQT 217

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 579463253 197 GVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:PRK13501 218 GMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYR 275
PRK10296 PRK10296
DNA-binding transcriptional regulator ChbR; Provisional
 204-254 1.22e-05

DNA-binding transcriptional regulator ChbR; Provisional


Pssm-ID: 182362 [Multi-domain]  Cd Length: 278  Bit Score: 47.83  E-value: 1.22e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 579463253 204 LNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:PRK10296 221 INEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPGSYR 271
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
103-254 1.55e-05

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 47.79  E-value: 1.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 103 QLRNIMARLVSTHIRH----NELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNddkvnQVCDYIELHFHEDLSLSELS 178
Cdd:PRK13500 155 QARQVIGQLEHESSQHvpfaNEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLD-----KLITRLAASLKSPFALDKFC 229

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 579463253 179 EYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:PRK13500 230 DEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWR 305
PRK13502 PRK13502
HTH-type transcriptional activator RhaR;
109-254 1.80e-05

HTH-type transcriptional activator RhaR;


Pssm-ID: 184093 [Multi-domain]  Cd Length: 282  Bit Score: 47.36  E-value: 1.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 109 ARLVSTHIRH---------NELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILnDDKVNQVCDYIELHFhedlSLSELSE 179
Cdd:PRK13502 126 ARQVINQLEHesngrdplaNEMAELLFGQLVMTLKRHRYATDDLPATSRETLL-DKLITALANSLECPF----ALDAFCQ 200

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 579463253 180 YVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
Cdd:PRK13502 201 QEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWR 275
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 170-254 5.00e-05

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 45.79  E-value: 5.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 170 EDLSLSELSEYVGWSESHLSKKFTESlGVGFQHFlnttrIEHAKLDLTYTD-------ETITDIALQNGFSSAASFARTF 242
Cdd:PRK09685 213 EILRPEWIAGELGISVRSLYRLFAEQ-GLVVAQY-----IRNRRLDRCADDlrpaaddEKITSIAYKWGFSDSSHFSTAF 286

                         90
                 ....*....|..
gi 579463253 243 KHFTHQTPKQYR 254
Cdd:PRK09685 287 KQRFGVSPGEYR 298
PRK15435 PRK15435
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;
155-261 8.56e-04

bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;


Pssm-ID: 185333 [Multi-domain]  Cd Length: 353  Bit Score: 42.47  E-value: 8.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579463253 155 DKVNQVCDYIELHfhEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAKLDLTyTDETITDIALQNGFSS 234
Cdd:PRK15435  85 DKITHACRLLEQE--TPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLREALA-KGESVTTSILNAGFPD 161

                         90       100
                 ....*....|....*....|....*....
gi 579463253 235 AASFARTFKHFTHQTPKQYR--GDRPAIT 261
Cdd:PRK15435 162 SSSYYRKADETLGMTAKQFRhgGENLAVR 190
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 219-254 2.68e-03

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 35.98  E-value: 2.68e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 579463253  219 TDETITDIALQNGFSSAAsFARTFKHFTHQTPKQYR 254
Cdd:pfam00165   7 TNLTIADIADELGFSRSY-FSRLFKKYTGVTPSQYR 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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