NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|579190998|gb|EUS38108|]
View 

hypothetical protein O253_02493 [Staphylococcus aureus M0048]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3113 super family cl12850
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-60 1.01e-22

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


The actual alignment was detected with superfamily member pfam11310:

Pssm-ID: 288203  Cd Length: 60  Bit Score: 81.18  E-value: 1.01e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 579190998   1 MQQQAYINATIDIRIPTEVEYKHFGDVDNEKDALADYLYNNPNEILEYDNLKIRNVNIEV 60
Cdd:pfam11310  1 MQHQAYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
 
Name Accession Description Interval E-value
DUF3113 pfam11310
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-60 1.01e-22

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


Pssm-ID: 288203  Cd Length: 60  Bit Score: 81.18  E-value: 1.01e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 579190998   1 MQQQAYINATIDIRIPTEVEYKHFGDVDNEKDALADYLYNNPNEILEYDNLKIRNVNIEV 60
Cdd:pfam11310  1 MQHQAYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
 
Name Accession Description Interval E-value
DUF3113 pfam11310
Protein of unknown function (DUF3113); This family of proteins has no known function. It has a ...
 1-60 1.01e-22

Protein of unknown function (DUF3113); This family of proteins has no known function. It has a highly conserved sequence.


Pssm-ID: 288203  Cd Length: 60  Bit Score: 81.18  E-value: 1.01e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 579190998   1 MQQQAYINATIDIRIPTEVEYKHFGDVDNEKDALADYLYNNPNEILEYDNLKIRNVNIEV 60
Cdd:pfam11310  1 MQHQAYINASIDIRIPTEVESHHFDDIDDEKDMLADRLDDNPDELLKYDNINIKHADIEV 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH