NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|579190845|gb|EUS37959|]
View 

ferredoxin [Staphylococcus aureus M0048]

Protein Classification

ferredoxin( domain architecture ID 10596226)

ferredoxin is an iron-sulfur protein transferring electrons in a wide variety of metabolic reactions

Gene Ontology:  GO:0005506|GO:0009055
PubMed:  1846297|15973049

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 7-69 1.66e-11

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


:

Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 53.85  E-value: 1.66e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 579190845   7 VDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNqgtaeVPEELYEDMEDAIDGCPTDSIKI 69
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDQP-----VNEEEEDLAEEALDSCPVEAIGT 58
 
Name Accession Description Interval E-value
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 7-69 1.66e-11

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 53.85  E-value: 1.66e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 579190845   7 VDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNqgtaeVPEELYEDMEDAIDGCPTDSIKI 69
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDQP-----VNEEEEDLAEEALDSCPVEAIGT 58
Fer COG1141
Ferredoxin [Energy production and conversion];
6-71 1.19e-10

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 51.81  E-value: 1.19e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 579190845  6 IVDMDTCIACGACGAAAPDIYDYDDEGIAFVILDdnqgtaEVPEELYEDMEDAIDGCPTDSIKIAD 71
Cdd:COG1141   4 TVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDE------EVPEELEEDVREAADACPVGAITVEE 63
 
Name Accession Description Interval E-value
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 7-69 1.66e-11

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 53.85  E-value: 1.66e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 579190845   7 VDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNqgtaeVPEELYEDMEDAIDGCPTDSIKI 69
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDQP-----VNEEEEDLAEEALDSCPVEAIGT 58
Fer COG1141
Ferredoxin [Energy production and conversion];
6-71 1.19e-10

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 51.81  E-value: 1.19e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 579190845  6 IVDMDTCIACGACGAAAPDIYDYDDEGIAFVILDdnqgtaEVPEELYEDMEDAIDGCPTDSIKIAD 71
Cdd:COG1141   4 TVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDE------EVPEELEEDVREAADACPVGAITVEE 63
Fer4_15 pfam13459
4Fe-4S single cluster domain;
7-69 2.78e-04

4Fe-4S single cluster domain;


Pssm-ID: 404359 [Multi-domain]  Cd Length: 66  Bit Score: 35.42  E-value: 2.78e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 579190845   7 VDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNQ-GTAEVPEELYEDMEDAIDGCPTDSIKI 69
Cdd:pfam13459  3 VDRDRCIGCGLCVALDPELFELDDDGKASVLLDDGEiGEGEVPDDDEEAAQEAARACPVDAIRV 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH