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Conserved domains on  [gi|579190834|gb|EUS37948|]
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hypothetical protein O253_02534 [Staphylococcus aureus M0048]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HEPPP_synt_1 super family cl06369
Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; This family contains subunit 1 of ...
 71-154 7.67e-06

Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; This family contains subunit 1 of heptaprenyl diphosphate synthase (HEPPP synthase) (EC:2.5.1.30) (approximately 230 residues long) from Bacilli. The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis. This family corresponds to the regulatory subunit.


The actual alignment was detected with superfamily member pfam07307:

Pssm-ID: 399944  Cd Length: 210  Bit Score: 44.60  E-value: 7.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579190834   71 ILIGDLISAHFYTLLAEINDLSFQNEISKAIVEINELKSSLHHQALNDYE-ISQAIVKIETLFPYITLSHFGINIDESEI 149
Cdd:pfam07307  73 VLAGDYYSGLYYYLLAEVKDIPMIRLLAEAIKEINEHKIRLYQKDVETFEeLLNSVKKIESALFQKLAEHFQLPTWKDLS 152


                  ....*
gi 579190834  150 YNYLF 154
Cdd:pfam07307 153 SDFLL 157
 
Name Accession Description Interval E-value
HEPPP_synt_1 pfam07307
Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; This family contains subunit 1 of ...
 71-154 7.67e-06

Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; This family contains subunit 1 of heptaprenyl diphosphate synthase (HEPPP synthase) (EC:2.5.1.30) (approximately 230 residues long) from Bacilli. The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis. This family corresponds to the regulatory subunit.


Pssm-ID: 399944  Cd Length: 210  Bit Score: 44.60  E-value: 7.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579190834   71 ILIGDLISAHFYTLLAEINDLSFQNEISKAIVEINELKSSLHHQALNDYE-ISQAIVKIETLFPYITLSHFGINIDESEI 149
Cdd:pfam07307  73 VLAGDYYSGLYYYLLAEVKDIPMIRLLAEAIKEINEHKIRLYQKDVETFEeLLNSVKKIESALFQKLAEHFQLPTWKDLS 152


                  ....*
gi 579190834  150 YNYLF 154
Cdd:pfam07307 153 SDFLL 157
 
Name Accession Description Interval E-value
HEPPP_synt_1 pfam07307
Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; This family contains subunit 1 of ...
 71-154 7.67e-06

Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; This family contains subunit 1 of heptaprenyl diphosphate synthase (HEPPP synthase) (EC:2.5.1.30) (approximately 230 residues long) from Bacilli. The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis. This family corresponds to the regulatory subunit.


Pssm-ID: 399944  Cd Length: 210  Bit Score: 44.60  E-value: 7.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 579190834   71 ILIGDLISAHFYTLLAEINDLSFQNEISKAIVEINELKSSLHHQALNDYE-ISQAIVKIETLFPYITLSHFGINIDESEI 149
Cdd:pfam07307  73 VLAGDYYSGLYYYLLAEVKDIPMIRLLAEAIKEINEHKIRLYQKDVETFEeLLNSVKKIESALFQKLAEHFQLPTWKDLS 152


                  ....*
gi 579190834  150 YNYLF 154
Cdd:pfam07307 153 SDFLL 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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