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Conserved domains on  [gi|578586138|gb|EUO21773|]
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hypothetical protein P101_00159 [Staphylococcus aureus M1039]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ntox50 super family cl21346
Bacterial toxin 50; A predicted RNase toxin found in bacterial polymorphic toxin systems that ...
 14-93 4.93e-17

Bacterial toxin 50; A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.


The actual alignment was detected with superfamily member pfam15542:

Pssm-ID: 406083  Cd Length: 93  Bit Score: 69.33  E-value: 4.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578586138  14 LNNEKQQRHILNTNEYNNKKnnssflpSYITIDSNEIEKVTKKEFIDFPVLFDDEGNFRKKQVIDYKKIIGKSY--VNGK 91
Cdd:pfam15542  1 INPGKQGKHIKGHNNYIQGK-------SYLTIDNKDAQELIDKYAGTGDVVFDRKGNWRNKEVIDFGEIIGVYYdnVTGE 73


                 ..
gi 578586138  92 YM 93
Cdd:pfam15542 74 YT 75
 
Name Accession Description Interval E-value
Ntox50 pfam15542
Bacterial toxin 50; A predicted RNase toxin found in bacterial polymorphic toxin systems that ...
 14-93 4.93e-17

Bacterial toxin 50; A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.


Pssm-ID: 406083  Cd Length: 93  Bit Score: 69.33  E-value: 4.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578586138  14 LNNEKQQRHILNTNEYNNKKnnssflpSYITIDSNEIEKVTKKEFIDFPVLFDDEGNFRKKQVIDYKKIIGKSY--VNGK 91
Cdd:pfam15542  1 INPGKQGKHIKGHNNYIQGK-------SYLTIDNKDAQELIDKYAGTGDVVFDRKGNWRNKEVIDFGEIIGVYYdnVTGE 73


                 ..
gi 578586138  92 YM 93
Cdd:pfam15542 74 YT 75
 
Name Accession Description Interval E-value
Ntox50 pfam15542
Bacterial toxin 50; A predicted RNase toxin found in bacterial polymorphic toxin systems that ...
 14-93 4.93e-17

Bacterial toxin 50; A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.


Pssm-ID: 406083  Cd Length: 93  Bit Score: 69.33  E-value: 4.93e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578586138  14 LNNEKQQRHILNTNEYNNKKnnssflpSYITIDSNEIEKVTKKEFIDFPVLFDDEGNFRKKQVIDYKKIIGKSY--VNGK 91
Cdd:pfam15542  1 INPGKQGKHIKGHNNYIQGK-------SYLTIDNKDAQELIDKYAGTGDVVFDRKGNWRNKEVIDFGEIIGVYYdnVTGE 73


                 ..
gi 578586138  92 YM 93
Cdd:pfam15542 74 YT 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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