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Conserved domains on  [gi|577772546|gb|EUJ33504|]
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hypothetical protein MFLO_03138 [Listeria floridensis FSL S10-1187]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3116 pfam11313
Protein of unknown function (DUF3116); This family of proteins with unknown function appears ...
 1-84 1.57e-30

Protein of unknown function (DUF3116); This family of proteins with unknown function appears to be restricted to Bacillales.


:

Pssm-ID: 402765  Cd Length: 84  Bit Score: 102.77  E-value: 1.57e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577772546   1 MWRPTDEEQKMVLSFILDPEFVLINMQQDSF-AHAKMTISKNEFLRVLYWLEQENFLIRLKNVpYNQKKYFLTDKGDLLY 79
Cdd:pfam11313  1 MEEPTNALILQVLSAVKDPNFTMDNLTFESFdFDSLADYTKNELLYTLYWLEWNGYILRMENS-NNKKRYRLTEKGKLLY 79


                 ....*
gi 577772546  80 RKLSA 84
Cdd:pfam11313 80 RKLKN 84
 
Name Accession Description Interval E-value
DUF3116 pfam11313
Protein of unknown function (DUF3116); This family of proteins with unknown function appears ...
 1-84 1.57e-30

Protein of unknown function (DUF3116); This family of proteins with unknown function appears to be restricted to Bacillales.


Pssm-ID: 402765  Cd Length: 84  Bit Score: 102.77  E-value: 1.57e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577772546   1 MWRPTDEEQKMVLSFILDPEFVLINMQQDSF-AHAKMTISKNEFLRVLYWLEQENFLIRLKNVpYNQKKYFLTDKGDLLY 79
Cdd:pfam11313  1 MEEPTNALILQVLSAVKDPNFTMDNLTFESFdFDSLADYTKNELLYTLYWLEWNGYILRMENS-NNKKRYRLTEKGKLLY 79


                 ....*
gi 577772546  80 RKLSA 84
Cdd:pfam11313 80 RKLKN 84
 
Name Accession Description Interval E-value
DUF3116 pfam11313
Protein of unknown function (DUF3116); This family of proteins with unknown function appears ...
 1-84 1.57e-30

Protein of unknown function (DUF3116); This family of proteins with unknown function appears to be restricted to Bacillales.


Pssm-ID: 402765  Cd Length: 84  Bit Score: 102.77  E-value: 1.57e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577772546   1 MWRPTDEEQKMVLSFILDPEFVLINMQQDSF-AHAKMTISKNEFLRVLYWLEQENFLIRLKNVpYNQKKYFLTDKGDLLY 79
Cdd:pfam11313  1 MEEPTNALILQVLSAVKDPNFTMDNLTFESFdFDSLADYTKNELLYTLYWLEWNGYILRMENS-NNKKRYRLTEKGKLLY 79


                 ....*
gi 577772546  80 RKLSA 84
Cdd:pfam11313 80 RKLKN 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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