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Conserved domains on  [gi|577695717|gb|EUJ06640|]
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hypothetical protein Q548_00794 [Staphylococcus aureus M1492]

Protein Classification

DinB family protein( domain architecture ID 10583333)

DinB family protein adopts a four-helix bundle structure, similar to Bacillus subtilis protein YuaE

CATH:  1.20.120.450
PubMed:  20208147

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DinB_2 pfam12867
DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The ...
 34-141 5.04e-05

DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.


:

Pssm-ID: 463733  Cd Length: 128  Bit Score: 40.52  E-value: 5.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577695717   34 HEPFSNTIHWQFGHVLTIFESALAVAGKENidlniyRPLFgngssPDEWKDEVPSIEKILEGLQTLPERA----RNLTED 109
Cdd:pfam12867  25 PAPGKWSIAWLLGHLADVEEVLLARLRLGE------EAPR-----PAYDPGEPPSAAELLAYLAAVRARLlallAALTDA 93

                          90       100       110
                  ....*....|....*....|....*....|...
gi 577695717  110 DLA-IELKQPIVGCNNLEELLVLNAIHIPLHAG 141
Cdd:pfam12867  94 DLArPVTAPPGLGKLTLGELLLFVAAHEAHHLG 126
 
Name Accession Description Interval E-value
DinB_2 pfam12867
DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The ...
 34-141 5.04e-05

DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.


Pssm-ID: 463733  Cd Length: 128  Bit Score: 40.52  E-value: 5.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577695717   34 HEPFSNTIHWQFGHVLTIFESALAVAGKENidlniyRPLFgngssPDEWKDEVPSIEKILEGLQTLPERA----RNLTED 109
Cdd:pfam12867  25 PAPGKWSIAWLLGHLADVEEVLLARLRLGE------EAPR-----PAYDPGEPPSAAELLAYLAAVRARLlallAALTDA 93

                          90       100       110
                  ....*....|....*....|....*....|...
gi 577695717  110 DLA-IELKQPIVGCNNLEELLVLNAIHIPLHAG 141
Cdd:pfam12867  94 DLArPVTAPPGLGKLTLGELLLFVAAHEAHHLG 126
 
Name Accession Description Interval E-value
DinB_2 pfam12867
DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The ...
 34-141 5.04e-05

DinB superfamily; The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.


Pssm-ID: 463733  Cd Length: 128  Bit Score: 40.52  E-value: 5.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577695717   34 HEPFSNTIHWQFGHVLTIFESALAVAGKENidlniyRPLFgngssPDEWKDEVPSIEKILEGLQTLPERA----RNLTED 109
Cdd:pfam12867  25 PAPGKWSIAWLLGHLADVEEVLLARLRLGE------EAPR-----PAYDPGEPPSAAELLAYLAAVRARLlallAALTDA 93

                          90       100       110
                  ....*....|....*....|....*....|...
gi 577695717  110 DLA-IELKQPIVGCNNLEELLVLNAIHIPLHAG 141
Cdd:pfam12867  94 DLArPVTAPPGLGKLTLGELLLFVAAHEAHHLG 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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