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Conserved domains on  [gi|577646872|gb|EUI58304|]
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hypothetical protein Q186_01944 [Staphylococcus aureus M1184]

Protein Classification

phage baseplate upper protein( domain architecture ID 10566359)

phage baseplate upper protein (BppU) is a component of the baseplate assembly such as in Lactococcus lactis phage TP901-1, where the baseplate is formed by 18 copies of BppU, which are arranged around a central Dit hexamer and hold 54 receptor-binding proteins organized as 18 trimers

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BppU_N pfam10651
BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also ...
 11-160 8.30e-39

BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold.


:

Pssm-ID: 431419  Cd Length: 141  Bit Score: 139.38  E-value: 8.30e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577646872   11 NLIELKTTSQYNPVIDTNISFYESDRGTGVLNFAVTKNNRPLSISSEHVKTSIVLKTDdynvdrGAYISDELTVVDAING 90
Cdd:pfam10651   1 YDITLDTTAQNNKIKQTGIRFRTGDSNTAVLNFKITKNGQPLDLTGLTAKFELVKPDD------GSIVSDELEILDAKKG 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577646872   91 RLQYVIPNEFLKHSGKVHAQAFFTQHGsNNVVVERQFSFDIENDLVSgfDGITKLVYIKSIQDTIEAVGK 160
Cdd:pfam10651  75 KFKYVLPEEVLKHVGKVKAYFSVFKED-DQVISTRNFSFNVEKSLVE--DGIVSSDYIEDFEDLIEEVTE 141
 
Name Accession Description Interval E-value
BppU_N pfam10651
BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also ...
 11-160 8.30e-39

BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold.


Pssm-ID: 431419  Cd Length: 141  Bit Score: 139.38  E-value: 8.30e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577646872   11 NLIELKTTSQYNPVIDTNISFYESDRGTGVLNFAVTKNNRPLSISSEHVKTSIVLKTDdynvdrGAYISDELTVVDAING 90
Cdd:pfam10651   1 YDITLDTTAQNNKIKQTGIRFRTGDSNTAVLNFKITKNGQPLDLTGLTAKFELVKPDD------GSIVSDELEILDAKKG 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577646872   91 RLQYVIPNEFLKHSGKVHAQAFFTQHGsNNVVVERQFSFDIENDLVSgfDGITKLVYIKSIQDTIEAVGK 160
Cdd:pfam10651  75 KFKYVLPEEVLKHVGKVKAYFSVFKED-DQVISTRNFSFNVEKSLVE--DGIVSSDYIEDFEDLIEEVTE 141
 
Name Accession Description Interval E-value
BppU_N pfam10651
BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also ...
 11-160 8.30e-39

BppU N-terminal domain; This is the N-terminal domain of baseplate upper proteins (BppU, also known as ORF48) which is found in phage from a number of different bacteria. The N-terminal domain exhibits a beta-sandwich immunoglobulin fold.


Pssm-ID: 431419  Cd Length: 141  Bit Score: 139.38  E-value: 8.30e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577646872   11 NLIELKTTSQYNPVIDTNISFYESDRGTGVLNFAVTKNNRPLSISSEHVKTSIVLKTDdynvdrGAYISDELTVVDAING 90
Cdd:pfam10651   1 YDITLDTTAQNNKIKQTGIRFRTGDSNTAVLNFKITKNGQPLDLTGLTAKFELVKPDD------GSIVSDELEILDAKKG 74

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 577646872   91 RLQYVIPNEFLKHSGKVHAQAFFTQHGsNNVVVERQFSFDIENDLVSgfDGITKLVYIKSIQDTIEAVGK 160
Cdd:pfam10651  75 KFKYVLPEEVLKHVGKVKAYFSVFKED-DQVISTRNFSFNVEKSLVE--DGIVSSDYIEDFEDLIEEVTE 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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