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Conserved domains on  [gi|542014976|gb|ERH60811|]
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cell division protein [Pseudomonas simiae]

Protein Classification

SPOR domain-containing protein( domain architecture ID 11459733)

SPOR domain-containing protein similar to Bacillus subtilis stage II sporulation protein B and Escherichia coli cell division proteins FtsN, DamX, and DedD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 145-216 5.98e-20

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 82.13  E-value: 5.98e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 542014976 145 SWSIQVASLGNREGADALQKKLRSQGYNAYIRSADGKN----RVFIGPLIERAEADRLRDLLDRQQNLKGFVTRFQ 216
Cdd:COG3147   65 GWVVQLGAFSNEDNAKELVAKLRAAGYPAYTEPVTTGGgtlyRVRVGPFASRAEAEAALAKLKKLTGLKGFVVRYK 140
 
Name Accession Description Interval E-value
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 145-216 5.98e-20

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 82.13  E-value: 5.98e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 542014976 145 SWSIQVASLGNREGADALQKKLRSQGYNAYIRSADGKN----RVFIGPLIERAEADRLRDLLDRQQNLKGFVTRFQ 216
Cdd:COG3147   65 GWVVQLGAFSNEDNAKELVAKLRAAGYPAYTEPVTTGGgtlyRVRVGPFASRAEAEAALAKLKKLTGLKGFVVRYK 140
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 146-214 3.06e-14

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 65.46  E-value: 3.06e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 542014976  146 WSIQVASLGNREGADALQKKLRSQGYNAY---IRSADGKNRVFIGPLIERAEADRLRDLLDRQQNLKGFVTR 214
Cdd:pfam05036   5 YYVQLGAFSNEANAEALAAKLRAKGFAAYvavTSKGGGLYRVRVGPFASREEARAALKKLKALAGLSPFVVK 76
PRK10927 PRK10927
cell division protein FtsN;
146-196 1.56e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 38.89  E-value: 1.56e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 542014976 146 WSIQVASLGNREGADALQKKLRSQGYNAYIRSADGKNRVFIGPLIERAEAD 196
Cdd:PRK10927 248 WMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENAD 298
 
Name Accession Description Interval E-value
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 145-216 5.98e-20

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 82.13  E-value: 5.98e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 542014976 145 SWSIQVASLGNREGADALQKKLRSQGYNAYIRSADGKN----RVFIGPLIERAEADRLRDLLDRQQNLKGFVTRFQ 216
Cdd:COG3147   65 GWVVQLGAFSNEDNAKELVAKLRAAGYPAYTEPVTTGGgtlyRVRVGPFASRAEAEAALAKLKKLTGLKGFVVRYK 140
SPOR pfam05036
SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell ...
 146-214 3.06e-14

SPOR domain; Bacterial SPOR domains bind peptidoglycan (PG) and target proteins to the cell division site by binding to denuded glycan strands that lack stem peptides. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.


Pssm-ID: 461531 [Multi-domain]  Cd Length: 76  Bit Score: 65.46  E-value: 3.06e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 542014976  146 WSIQVASLGNREGADALQKKLRSQGYNAY---IRSADGKNRVFIGPLIERAEADRLRDLLDRQQNLKGFVTR 214
Cdd:pfam05036   5 YYVQLGAFSNEANAEALAAKLRAKGFAAYvavTSKGGGLYRVRVGPFASREEARAALKKLKALAGLSPFVVK 76
FtsN COG3087
Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];
146-214 1.61e-08

Cell division protein FtsN [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442321 [Multi-domain]  Cd Length: 198  Bit Score: 52.71  E-value: 1.61e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 542014976 146 WSIQVASLGNREGADALQKKLRSQGYNAYIRSADGK----NRVFIGPLIERAEADRLRDLLdRQQNLKGFVTR 214
Cdd:COG3087  125 YYVQVGAFRSRANAERLRARLALLGLEARVVEVEVGggtwYRVRVGPFSSRAEAEKAREKL-KAAGIDALVVR 196
PRK10927 PRK10927
cell division protein FtsN;
146-196 1.56e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 38.89  E-value: 1.56e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 542014976 146 WSIQVASLGNREGADALQKKLRSQGYNAYIRSADGKNRVFIGPLIERAEAD 196
Cdd:PRK10927 248 WMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENAD 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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