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Conserved domains on  [gi|480776186|gb|ENZ74724|]
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multiple sugar ABC transporter permease [Enterocloster bolteae 90B7]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
7-297 2.63e-93

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 278.17  E-value: 2.63e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186   7 TLRQWFNKESVAGSICTLPFAVGFLCFTLVPICMSLYYSLTDYNILS-QPKFIGLANYIEMFTtDKTYIKSLFVTIFYTF 85
Cdd:COG1175    8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFT-DPRFWNALGNTLLFTV 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  86 ISVPMRLVFALAVAVILVRNTRMTPIYRAVYYLPSIIGGsVAVSILWKRIFATD-GVINALLAAVGIDTQfAWLGNTKTA 164
Cdd:COG1175   87 VSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISP-VVVALIWKWLFNPDyGLLNALLGALGLEPI-NWLGDPSLA 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 165 IWTLILLAVWQ-FGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQCYIIT 243
Cdd:COG1175  165 LPAVIIVTVWKgTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLT 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 480776186 244 QGKPMNSTLFYTVYMYQQSFEFYRMGYGAAMAWVMLFIVGTVTVILFKTKKKWV 297
Cdd:COG1175  245 GGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
7-297 2.63e-93

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 278.17  E-value: 2.63e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186   7 TLRQWFNKESVAGSICTLPFAVGFLCFTLVPICMSLYYSLTDYNILS-QPKFIGLANYIEMFTtDKTYIKSLFVTIFYTF 85
Cdd:COG1175    8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFT-DPRFWNALGNTLLFTV 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  86 ISVPMRLVFALAVAVILVRNTRMTPIYRAVYYLPSIIGGsVAVSILWKRIFATD-GVINALLAAVGIDTQfAWLGNTKTA 164
Cdd:COG1175   87 VSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISP-VVVALIWKWLFNPDyGLLNALLGALGLEPI-NWLGDPSLA 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 165 IWTLILLAVWQ-FGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQCYIIT 243
Cdd:COG1175  165 LPAVIIVTVWKgTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLT 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 480776186 244 QGKPMNSTLFYTVYMYQQSFEFYRMGYGAAMAWVMLFIVGTVTVILFKTKKKWV 297
Cdd:COG1175  245 GGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
33-291 1.11e-22

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 94.89  E-value: 1.11e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  33 FTLVPICMSLYYSLTDYNILS-QPKFIGLANYIEMFTtDKTYIKSLFVTIFYTFISVPMRLVFALAVAVILVRNTRMTPI 111
Cdd:PRK10561  13 FFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFH-DSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 112 YRAVYYLPSIIGGSVAvSILWKRIFATD-GVINALLAAVGIDTQFAwlGNTKTAIWTLILLAVW-QFGSSMLIFLSALKQ 189
Cdd:PRK10561  92 YQTLMLLPYAVAPAVA-AVLWIFLFNPGrGLITHFLAEFGYDWNHA--QNSGQAMFLVVFASVWkQISYNFLFFFAALQS 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 190 IPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFL-AFSQCYIITQGKPMNSTLFYTVYMYQQSFEFYRM 268
Cdd:PRK10561 169 IPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFdTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDL 248

                        250       260
                 ....*....|....*....|...
gi 480776186 269 GYGAAMAWVMLFIVGTVTVILFK 291
Cdd:PRK10561 249 SSSAAQSVVLMFLVIVLTVVQFR 271
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-282 4.58e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 69.23  E-value: 4.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  77 LFVTIFYTFISVPMRLVFALAVAVILVRNTR-----MTPIYRAVYYLPSIIGGSVAVSILWKrifatdgvinallaavgi 151
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGkldrlLRRIIDLLLSLPSLVLGLLLVLLFGV------------------ 62

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 152 dtQFAWLGNTKTAIWTLILLAVWQFGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMIS 231
Cdd:cd06261   63 --LLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFAR 140

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 480776186 232 GFLAFSQCYIITQGKPMnsTLFYTVYMYQQSFEFYRMGYGAAMAWVMLFIV 282
Cdd:cd06261  141 ALGEFALVSFLGGGEAP--GPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 155-289 6.65e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.31  E-value: 6.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  155 FAWLGNTKTAIWTLILLAVWQ-FGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGF 233
Cdd:pfam00528  42 IAILSILGHGILPAIILALLGwAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL 121

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 480776186  234 LAFSQCYIITQGKPMNSTLFYTVYMYQQSFEFYRMGYGAAMAWVMLFIVGTVTVIL 289
Cdd:pfam00528 122 GGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 26-264 1.48e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 49.29  E-value: 1.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186   26 FAVGFLCFTLVPICMSLYYSLTDynilSQPKFIGLANYIEMFTTD---KTYIKSLFVTIFYTFISVPMRLVFALAVAvil 102
Cdd:TIGR03262  10 MILALLLFLLLPLLALLTKSVYD----SDGDFIGLANFAEYFATPgllQSLGNSLTVSAIVTAIVVPLAFAFAYALT--- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  103 vrNTRM--TPIYRAVYYLPsIIGGSVAVSILWKRIFATDGVINALLAAVGIdtqFAWLGntktaiwTLILLAVWQFGSSM 180
Cdd:TIGR03262  83 --RSRIpgKGAFRLVALLP-LLAPSLLPAISLIYLFGNQGLLKGLLGGFSI---YGFWG-------IVIGEVFYTFPHAL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  181 LIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQCYIITQGKPMNSTLFYTVYMYQ 260
Cdd:TIGR03262 150 MILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQ 229


                  ....
gi 480776186  261 QSFE 264
Cdd:TIGR03262 230 QNFP 233
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
7-297 2.63e-93

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 278.17  E-value: 2.63e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186   7 TLRQWFNKESVAGSICTLPFAVGFLCFTLVPICMSLYYSLTDYNILS-QPKFIGLANYIEMFTtDKTYIKSLFVTIFYTF 85
Cdd:COG1175    8 AARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFT-DPRFWNALGNTLLFTV 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  86 ISVPMRLVFALAVAVILVRNTRMTPIYRAVYYLPSIIGGsVAVSILWKRIFATD-GVINALLAAVGIDTQfAWLGNTKTA 164
Cdd:COG1175   87 VSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISP-VVVALIWKWLFNPDyGLLNALLGALGLEPI-NWLGDPSLA 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 165 IWTLILLAVWQ-FGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQCYIIT 243
Cdd:COG1175  165 LPAVIIVTVWKgTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLT 244

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 480776186 244 QGKPMNSTLFYTVYMYQQSFEFYRMGYGAAMAWVMLFIVGTVTVILFKTKKKWV 297
Cdd:COG1175  245 GGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 24-289 1.44e-27

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 108.64  E-value: 1.44e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  24 LPFAVGFLCFTLVPIcMSLYYSLTDYNI---LSQPKFIGLANYIEMFTtDKTYIKSLFVTIFYTFISvpmrLVFALAVAV 100
Cdd:COG4209   34 LPGLIYLLIFSYLPM-YGIVIAFKDYNPfkgIFGSPWVGLKNFKFLFS-SPDFWRVLRNTLLISLLK----LVFGFPLPI 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 101 IL------VRNTRMTPIYRAVYYLPSIIGgSVAVSILWKRIFATD-GVINALLAAVGIDTqFAWLGNTKTAIWTLILLAV 173
Cdd:COG4209  108 ILalllneLRSKRFKKTVQTISYLPHFLS-WVVVAGIVYQFLSPDtGLVNQLLRALGGEP-INFLTEPKYFRPIYVFSGI 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 174 WQ-FGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQmISGFLA--FSQCYIitqgkpMNS 250
Cdd:COG4209  186 WKeAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLILN-IGNILNvgFEQIYL------LYN 258

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 480776186 251 TLFYTV------YMYQQSFEFYRMGYGAAmawVMLF--IVGTVTVIL 289
Cdd:COG4209  259 PLNYSTsdvidtYVYRIGLQNGDYSYATA---VGLFksVVGLILVLI 302
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 24-295 6.99e-26

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 103.69  E-value: 6.99e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  24 LPFAVGFLCFTLVPICMSLYYSLTDYNILSQPKF-IGLANYIEMFTtDKTYIKSLFVTIFYTFISVPMRLVFALAVAVIL 102
Cdd:COG1176   16 LPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPgFTLENYARLFT-DPLYLKVLLRTLWIALLTTLICLLLGYPIAYFL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 103 VR-NTRMTPIYRAVYYLPSIIGGSVAVsILWKRIFATDGVINALLAAVGIDTQFAWLGNTKTAI-----WTLILLAVwqf 176
Cdd:COG1176   95 ARaPPRWRNLLLLLVILPFWTSFLVRT-YAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVviglvYVYLPFMV--- 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 177 gssmLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIffnlimqMISGFLAFSQC---YIITQ---GkpmNS 250
Cdd:COG1176  171 ----LPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGI-------IAGSLLVFIPAlgaFVTPAllgG---GK 236

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 480776186 251 TLFYTVYMYQQSFEFYRMGYGAAMAWVMLFIVGTVTVILFKTKKK 295
Cdd:COG1176  237 VLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRR 281
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
33-291 1.11e-22

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 94.89  E-value: 1.11e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  33 FTLVPICMSLYYSLTDYNILS-QPKFIGLANYIEMFTtDKTYIKSLFVTIFYTFISVPMRLVFALAVAVILVRNTRMTPI 111
Cdd:PRK10561  13 FFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFH-DSYYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 112 YRAVYYLPSIIGGSVAvSILWKRIFATD-GVINALLAAVGIDTQFAwlGNTKTAIWTLILLAVW-QFGSSMLIFLSALKQ 189
Cdd:PRK10561  92 YQTLMLLPYAVAPAVA-AVLWIFLFNPGrGLITHFLAEFGYDWNHA--QNSGQAMFLVVFASVWkQISYNFLFFFAALQS 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 190 IPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFL-AFSQCYIITQGKPMNSTLFYTVYMYQQSFEFYRM 268
Cdd:PRK10561 169 IPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFdTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDL 248

                        250       260
                 ....*....|....*....|...
gi 480776186 269 GYGAAMAWVMLFIVGTVTVILFK 291
Cdd:PRK10561 249 SSSAAQSVVLMFLVIVLTVVQFR 271
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-282 4.58e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 69.23  E-value: 4.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  77 LFVTIFYTFISVPMRLVFALAVAVILVRNTR-----MTPIYRAVYYLPSIIGGSVAVSILWKrifatdgvinallaavgi 151
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGkldrlLRRIIDLLLSLPSLVLGLLLVLLFGV------------------ 62

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 152 dtQFAWLGNTKTAIWTLILLAVWQFGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMIS 231
Cdd:cd06261   63 --LLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFAR 140

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 480776186 232 GFLAFSQCYIITQGKPMnsTLFYTVYMYQQSFEFYRMGYGAAMAWVMLFIV 282
Cdd:cd06261  141 ALGEFALVSFLGGGEAP--GPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
18-288 4.88e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 72.12  E-value: 4.88e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  18 AGSICTLPFAVGFLCFTLVPICMSLYYSLTDynilsqpkfiGLANYIEMFTtDKTYIKSLFVTIFYTFISVPMRLVFALA 97
Cdd:COG1178    8 RPRLLLLLLALLLALLVLLPLLALLLRAFTD----------GLANFWALLS-DPYLWRALGNTLLLALLVTLLSLLLGVP 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  98 VAVILVR-NTRMTPIYRAVYYLPSIIGgSVAVSILWKRIFATDGVINALLAAvgidtqfaWLGNTKTAIWTL----ILLA 172
Cdd:COG1178   77 LAWLLARtDFPGRRLLRWLLLLPLALP-PYVVALAWIALFGPNGLLNTLLRA--------LFGLEPPDIYGLggiiLVLV 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 173 VWQFGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQCYIITQGkpmNSTL 252
Cdd:COG1178  148 LFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGG---YTTL 224

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 480776186 253 fyTVYMYQQSFEFYRMGYGAAMAWVMLFIVGTVTVI 288
Cdd:COG1178  225 --TTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLL 258
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
17-296 9.82e-13

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 68.26  E-value: 9.82e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  17 VAGSICTLPFAVGFLcftlVPICMSLYYSLTDYNilsqPKFIGLANYIEMFTTDKTyIKSLFVTIFYTFISVPMRLVFAL 96
Cdd:COG1178  289 LALALCLLLVLLGLL----LPLLALLLWSLTKAL----DDNLTLDNYRFVLLDPSL-LRALLNSLLLALLAALLAVLLAL 359

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  97 AVAVILVR-NTRMTPIYRAVYYLPSIIGGSV-AVSILWkrifatdgvinALLAAVGIdtqfaWLGNTktaIWTLIL-LAV 173
Cdd:COG1178  360 LLAYLVRRrRGRLARLLDRLAMLPYAVPGIVlGLGLLL-----------LFNRPLPL-----LLYGT---LAILVLaYVV 420

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 174 WQFGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQcyIITQGKPMNSTLf 253
Cdd:COG1178  421 RFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSA--TLLLRPPGFETL- 497

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 480776186 254 yTVYMYQQsFEFYRMGYGAAMAWVMLFIVGTVTVILFKTKKKW 296
Cdd:COG1178  498 -AVLIYQL-ASSGRYGEAAALALLLVLVSLLPVLLLERLLGRR 538
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 51-239 8.61e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 64.00  E-value: 8.61e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  51 ILSQPKFIGLANYIEMFTtDKTYIKSLFVTIFYTFISVPMRLVFALAVAVILVRNTrmTPIYRAV-------YYLPSIIG 123
Cdd:COG0555   31 LVLKAAGLGWAEFWAVLT-SPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYR--FPGKRLVdalvdlpFALPTAVA 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 124 GsVAVSILwkriFATDGVINALLAAVGIDTQFAWLGntktaiwtlILLAVWQFGSSMLI--FLSALKQIPNSLYESARVD 201
Cdd:COG0555  108 G-IALLLL----FGPNGWLGQLLAPLGIKVAFTPLG---------IVLAQTFVSLPFVVrtVQPVLEELDPELEEAAATL 173

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 480776186 202 GASRPYIFWKITLPMLTPTIffnlimqmISGF-LAFSQC 239
Cdd:COG0555  174 GASRWQTFRRVILPLLLPAL--------LTGFaLAFARA 204
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 26-295 1.72e-11

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 63.21  E-value: 1.72e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  26 FAVGFLCFTLVPICMSLYYSLTDYNILS-QPKFIGLANYIEMFTtDKTYIKSLFVTIFYTFISVPMRLVFALAVAVILVR 104
Cdd:COG1177   12 FLALVLLFLYLPILVLVLYSFNDSWFLTfPPEGFTLRWYAELFS-DPRLLDALLNSLLIALLSTLLATVLGTPAALALAR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 105 -NTRMTPIYRAVYYLPSIIGGSV-AVSILwkrifatdgvinALLAAVGIDTQFawlgntktaiWTLIL-LAVWQFGSSML 181
Cdd:COG1177   91 yRFRGRRLLLALLLLPLVVPGIVlGVALL------------LLFSALGLSGGL----------WGLILaHVVFTLPFVVL 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 182 IFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFfnlimqmISGFLAFSQC---YIITQ--GKPMNSTLfyTV 256
Cdd:COG1177  149 VVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGIL-------AGALLAFTLSfdeFVITLflAGPGVTTL--PV 219

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 480776186 257 YMYQQsfefYRMGY---GAAMAWVMLFIVGTVTVILFKTKKK 295
Cdd:COG1177  220 YIYSM----IRRGIspeINALSTLLILLSLLLLLLAERLRRR 257
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 26-290 5.78e-10

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 58.95  E-value: 5.78e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  26 FAVGFLCFTLVPICMSLYYSLTDYNILSQ------PKFIGLANYIEMFTTDkTYIKSLFVTIFYTFISVPMRLVFALAVA 99
Cdd:COG0395   20 LLILLALLFLFPLYWMVVTSFKPPAEIFSgppsllPSEFTLENYRAAFTDG-PFGRYLLNSLIVAVVSTVLSLLLSSLAA 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 100 VILVRNTrmTPIYRAVYYLpsiiggsvavsilwkrIFATdGVINALLAAVGIDTQFAWLG--NTktaIWTLILLAVwQFG 177
Cdd:COG0395   99 YALARFR--FRGRKLLFLL----------------ILAT-LMIPGQVLLIPLYLLFRQLGllNT---YWGLILPYL-AFG 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 178 SSMLIFL--SALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQCYIITQGkPMNSTLFYT 255
Cdd:COG0395  156 LPFGIFLlrQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTS-PDLRTLPVG 234

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 480776186 256 VYMYQQSFEFYrmgYGAAMAWVMLFIVGTVTVILF 290
Cdd:COG0395  235 LASFQGQYGTD---WGLLMAAAVIATLPVLILFLF 266
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 155-289 6.65e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 57.31  E-value: 6.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  155 FAWLGNTKTAIWTLILLAVWQ-FGSSMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGF 233
Cdd:pfam00528  42 IAILSILGHGILPAIILALLGwAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGAL 121

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 480776186  234 LAFSQCYIITQGKPMNSTLFYTVYMYQQSFEFYRMGYGAAMAWVMLFIVGTVTVIL 289
Cdd:pfam00528 122 GGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLL 177
malF PRK10999
maltose ABC transporter permease MalF;
57-294 2.83e-09

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 57.66  E-value: 2.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  57 FIGLANYIEMFTTDKtyIKSLFVTIF-YTFISVPMRLVFALAVAVILV-----RNTRMTPIYRAV----YYLPSIIggsv 126
Cdd:PRK10999 264 TIGWKNFTRVFTDEG--IQKPFIAIFiWTVVFSLLTVVLTVAVGMVLAclvqwEALKGKAVYRVLlilpYAVPSFI---- 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 127 avSIL-WKRIFATD-GVINALL-AAVGIdtQFAWLGNTKTAIWTLILLAVW-QFGSSMLIFLSALKQIPNSLYESARVDG 202
Cdd:PRK10999 338 --SILiFKGLFNQSfGEINMMLsALFGI--KPAWFSDPTLAKTMILIVNTWlGYPYMMILCMGLLKAIPDDLYEASAMDG 413

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 203 ASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQCYIITQGKP--MNST--LFYT----VYMYQQSFE------Fyrm 268
Cdd:PRK10999 414 AGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPdmIGTTtpAGYTdllvSYTYRIAFEggggqdF--- 490

                        250       260
                 ....*....|....*....|....*.
gi 480776186 269 GYGAAMAWVMLFIVGTVTVILFKTKK 294
Cdd:PRK10999 491 GLAAAIATLIFLLVGALAILNLKATK 516
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-236 4.46e-07

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 50.15  E-value: 4.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186   1 MKENKLTLRQWFnkesvAGSICTLPFAVGFLCFTLVPICMSLYYSLTDYNILSQ----PKFIGLANYIEMFTTD---KTY 73
Cdd:COG3833    1 MSRRKSRKRRRR-----LKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSssliPENFTLENYKKLFTETpflRWF 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  74 IKSLFVTIFYTFISVpmrlVFALAVAVILVRntrmtpiYRAVYYLPSIIggsvAVSILwkrifatdGVINALLAAVGIDT 153
Cdd:COG3833   76 LNSLIVAVVTAIISV----FLAALAAYAFSR-------FRFKGRKAGLL----ALLLL--------QMFPAFLALVALYL 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 154 QFAWLGNTKTaIWTLILlaVWQFGSS-MLIFLsaLK----QIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQ 228
Cdd:COG3833  133 LLSALGLLNT-LLGLIL--VYLGGAIpFNTWL--MKgyfdTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLS 207


                 ....*...
gi 480776186 229 MISGFLAF 236
Cdd:COG3833  208 FIGPWNDF 215
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 26-264 1.48e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 49.29  E-value: 1.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186   26 FAVGFLCFTLVPICMSLYYSLTDynilSQPKFIGLANYIEMFTTD---KTYIKSLFVTIFYTFISVPMRLVFALAVAvil 102
Cdd:TIGR03262  10 MILALLLFLLLPLLALLTKSVYD----SDGDFIGLANFAEYFATPgllQSLGNSLTVSAIVTAIVVPLAFAFAYALT--- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  103 vrNTRM--TPIYRAVYYLPsIIGGSVAVSILWKRIFATDGVINALLAAVGIdtqFAWLGntktaiwTLILLAVWQFGSSM 180
Cdd:TIGR03262  83 --RSRIpgKGAFRLVALLP-LLAPSLLPAISLIYLFGNQGLLKGLLGGFSI---YGFWG-------IVIGEVFYTFPHAL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  181 LIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIFFNLIMQMISGFLAFSQCYIITQGKPMNSTLFYTVYMYQ 260
Cdd:TIGR03262 150 MILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQ 229


                  ....
gi 480776186  261 QSFE 264
Cdd:TIGR03262 230 QNFP 233
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 59-223 7.17e-05

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 43.50  E-value: 7.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186   59 GLANYIEMFTtDKTYIKSLFVTIFYTFISVPMRLVFALAVAVILVRNT-RMTPIYRAVYYLPSIIGGSVAvSILWKRIFA 137
Cdd:TIGR00969  45 GLGQFWQNAT-DPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQfPGRKLLDALIDLPFALSPVVA-GLTLALLYG 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  138 TDGVINALLAAVGIDTQFAWLGntktaiwtlILLAvwqfgssmLIFLS----------ALKQIPNSLYESARVDGASRPY 207
Cdd:TIGR00969 123 SNGWLGSWLASFGIQIIFTWPG---------MALA--------MIFVSlpfvvrevqpVLEELGTEAEEAAATLGASGWQ 185

                         170
                  ....*....|....*.
gi 480776186  208 IFWKITLPMLTPTIFF 223
Cdd:TIGR00969 186 TFWRVTLPSIRWALLY 201
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 69-262 2.62e-04

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 41.61  E-value: 2.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186   69 TDKTYIKSLFVTIFYTFISVPMRLVFALAVAVILVRNT-RMTPIYRAVYYLPSIIGGSVA-VSILWkrIFATDGVINALL 146
Cdd:TIGR01581  15 TDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRfPLKKLLDTLLDLPMVLPPLVAgLALLL--LFGRNGLLGPYL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  147 AAVGIDTQFAWLGntktaiwtlILLAvwQFGSSMLIFL----SALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIF 222
Cdd:TIGR01581  93 EAAGIQVIFSTLG---------VVLA--QTFVASPYYVrvarSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLL 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 480776186  223 FNLIMQMISGFLAFSQCYII---TQGKPmnSTLFYTVYMYQQS 262
Cdd:TIGR01581 162 AGLVLAWARALGEFGATLMFagsIQGKT--RTLPLAIYLNIQS 202
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 185-221 2.87e-04

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 41.19  E-value: 2.87e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 480776186 185 SALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTI 221
Cdd:COG4149  111 AAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGI 147
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 157-222 7.59e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 40.13  E-value: 7.59e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 480776186 157 WLGNTKTA-IWTLILLAVWQFgssMLIFLSALKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIF 222
Cdd:COG0600  120 WFGIGEASkIFVIFLGAFFPI---LLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIF 183
modB PRK09421
molybdate ABC transporter permease subunit;
76-233 9.76e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 36.82  E-value: 9.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186  76 SLFVTIFYTFISVPmrlvFALAVAVILVR-NTRMTPIYRAVYYLPSIIGgSVAVSILWKRIFATDGVINALLAAvgidtq 154
Cdd:PRK09421  14 SLKVSSVAVLFSLP----FGILVAWLLARcRFPGKSLLDSLLHLPLVLP-PVVTGYLLLISMGRRGFIGQWLYE------ 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 480776186 155 faWLGNTKTAIWTLILLAVWQFGSSML---IFLSaLKQIPNSLYESARVDGASRPYIFWKITLPMLTPTIffnlIMQMIS 231
Cdd:PRK09421  83 --WFGISFAFSWRGAALAAAVMAFPLMvraIRLS-LEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGI----IAGTVL 155


                 ..
gi 480776186 232 GF 233
Cdd:PRK09421 156 AF 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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