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Conserved domains on  [gi|444730927|gb|ELW71296|]
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Pleckstrin homology domain-containing family O member 2 [Tupaia chinensis]

Protein Classification

PH_PLEKHO1_PLEKHO2 domain-containing protein( domain architecture ID 10193274)

PH_PLEKHO1_PLEKHO2 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH_PLEKHO1_PLEKHO2 cd13317
Pleckstrin homology domain-containing family O Pleckstrin homology domain; The PLEKHO family ...
15-114 6.03e-52

Pleckstrin homology domain-containing family O Pleckstrin homology domain; The PLEKHO family members are PLEKHO1 (also called CKIP-1/Casein kinase 2-interacting protein 1/CK2-interacting protein 1) and PLEKHO2 (PLEKHQ1/PH domain-containing family Q member 1). They both contain a single PH domain. PLEKHO1 acts as a scaffold protein that functions in plasma membrane recruitment, transcriptional activity modulation, and posttranscriptional modification regulation. As an adaptor protein it is involved in signaling pathways, apoptosis, differentiation, cytoskeleton, and bone formation. Not much is know about PLEKHO2. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


:

Pssm-ID: 270127  Cd Length: 102  Bit Score: 170.00  E-value: 6.03e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  15 GARTADKAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRS--PGN 92
Cdd:cd13317    1 GAPQPEKAGWIKKSSGGLLGIWKDRYVVLKGTQLLVYEKEEKVFDLEDYELCEYLRCSKSRASKKNKSRFTLIRSkqPGN 80
                         90       100
                 ....*....|....*....|..
gi 444730927  93 KVSDIKFQAPSGEEKESWIKAL 114
Cdd:cd13317   81 KAPDLKFQAVSPEEKESWINAL 102
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
225-428 4.00e-08

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 55.76  E-value: 4.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 225 SAGERAPSPVSASPEVHPDSQEDSETPAGADGGSEQPPNSVLSDKLKTSEAAAREGRKP---PTPPPKILSEKLKARMSG 301
Cdd:PRK07764 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHvavPDASDGGDGWPAKAGGAA 677
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 302 MEASGPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRCSSLGDLLGEG 381
Cdd:PRK07764 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 444730927 382 PPRPRQPRELAETLLSQAVEQLRQAtrvlQEMRDSGEPSPGAPGLRE 428
Cdd:PRK07764 758 PPPPPAPAPAAAPAAAPPPSPPSEE----EEMAEDDAPSMDDEDRRD 800
 
Name Accession Description Interval E-value
PH_PLEKHO1_PLEKHO2 cd13317
Pleckstrin homology domain-containing family O Pleckstrin homology domain; The PLEKHO family ...
15-114 6.03e-52

Pleckstrin homology domain-containing family O Pleckstrin homology domain; The PLEKHO family members are PLEKHO1 (also called CKIP-1/Casein kinase 2-interacting protein 1/CK2-interacting protein 1) and PLEKHO2 (PLEKHQ1/PH domain-containing family Q member 1). They both contain a single PH domain. PLEKHO1 acts as a scaffold protein that functions in plasma membrane recruitment, transcriptional activity modulation, and posttranscriptional modification regulation. As an adaptor protein it is involved in signaling pathways, apoptosis, differentiation, cytoskeleton, and bone formation. Not much is know about PLEKHO2. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270127  Cd Length: 102  Bit Score: 170.00  E-value: 6.03e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  15 GARTADKAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRS--PGN 92
Cdd:cd13317    1 GAPQPEKAGWIKKSSGGLLGIWKDRYVVLKGTQLLVYEKEEKVFDLEDYELCEYLRCSKSRASKKNKSRFTLIRSkqPGN 80
                         90       100
                 ....*....|....*....|..
gi 444730927  93 KVSDIKFQAPSGEEKESWIKAL 114
Cdd:cd13317   81 KAPDLKFQAVSPEEKESWINAL 102
PH pfam00169
PH domain; PH stands for pleckstrin homology.
21-118 8.53e-15

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 69.90  E-value: 8.53e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927   21 KAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALL----KRKHRFILLRSPGNKVSD 96
Cdd:pfam00169   3 KEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLSGCEVVEVVAsdspKRKFCFELRTGERTGKRT 82
                          90       100
                  ....*....|....*....|..
gi 444730927   97 IKFQAPSGEEKESWIKALNEGI 118
Cdd:pfam00169  83 YLLQAESEEERKDWIKAIQSAI 104
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
21-119 5.88e-12

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 61.80  E-value: 5.88e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927    21 KAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDEQ---KCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVsdI 97
Cdd:smart00233   3 KEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKksyKPKGSIDLSGCTVREAPDPDSSKKPHCFEIKTSDRKT--L 80
                           90       100
                   ....*....|....*....|..
gi 444730927    98 KFQAPSGEEKESWIKALNEGIN 119
Cdd:smart00233  81 LLQAESEEEREKWVEALRKAIA 102
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
225-428 4.00e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 55.76  E-value: 4.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 225 SAGERAPSPVSASPEVHPDSQEDSETPAGADGGSEQPPNSVLSDKLKTSEAAAREGRKP---PTPPPKILSEKLKARMSG 301
Cdd:PRK07764 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHvavPDASDGGDGWPAKAGGAA 677
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 302 MEASGPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRCSSLGDLLGEG 381
Cdd:PRK07764 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 444730927 382 PPRPRQPRELAETLLSQAVEQLRQAtrvlQEMRDSGEPSPGAPGLRE 428
Cdd:PRK07764 758 PPPPPAPAPAAAPAAAPPPSPPSEE----EEMAEDDAPSMDDEDRRD 800
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
176-349 3.50e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 42.45  E-value: 3.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 176 DVPDSGPPVLApsGDDSAAQpretprpLMPPTKSSPVPEMTSLGDRvETSAGERAPSPVSASPEVHPDSQEDSETPAGAD 255
Cdd:NF040712 169 DPGAHGGTVTA--LDDEARW-------LIDPDFGRPLRPLATVPRL-AREPADARPEEVEPAPAAEGAPATDSDPAEAGT 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 256 GGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEASAPDPAQV--SVNGVDDSP 333
Cdd:NF040712 239 PDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAApeAEEPARPEP 318
                        170
                 ....*....|....*.
gi 444730927 334 EPAQPAQATGSPGVIP 349
Cdd:NF040712 319 PPAPKPKRRRRRASVP 334
 
Name Accession Description Interval E-value
PH_PLEKHO1_PLEKHO2 cd13317
Pleckstrin homology domain-containing family O Pleckstrin homology domain; The PLEKHO family ...
15-114 6.03e-52

Pleckstrin homology domain-containing family O Pleckstrin homology domain; The PLEKHO family members are PLEKHO1 (also called CKIP-1/Casein kinase 2-interacting protein 1/CK2-interacting protein 1) and PLEKHO2 (PLEKHQ1/PH domain-containing family Q member 1). They both contain a single PH domain. PLEKHO1 acts as a scaffold protein that functions in plasma membrane recruitment, transcriptional activity modulation, and posttranscriptional modification regulation. As an adaptor protein it is involved in signaling pathways, apoptosis, differentiation, cytoskeleton, and bone formation. Not much is know about PLEKHO2. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270127  Cd Length: 102  Bit Score: 170.00  E-value: 6.03e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  15 GARTADKAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRS--PGN 92
Cdd:cd13317    1 GAPQPEKAGWIKKSSGGLLGIWKDRYVVLKGTQLLVYEKEEKVFDLEDYELCEYLRCSKSRASKKNKSRFTLIRSkqPGN 80
                         90       100
                 ....*....|....*....|..
gi 444730927  93 KVSDIKFQAPSGEEKESWIKAL 114
Cdd:cd13317   81 KAPDLKFQAVSPEEKESWINAL 102
PH pfam00169
PH domain; PH stands for pleckstrin homology.
21-118 8.53e-15

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 69.90  E-value: 8.53e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927   21 KAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALL----KRKHRFILLRSPGNKVSD 96
Cdd:pfam00169   3 KEGWLLKKGGGKKKSWKKRYFVLFDGSLLYYKDDKSGKSKEPKGSISLSGCEVVEVVAsdspKRKFCFELRTGERTGKRT 82
                          90       100
                  ....*....|....*....|..
gi 444730927   97 IKFQAPSGEEKESWIKALNEGI 118
Cdd:pfam00169  83 YLLQAESEEERKDWIKAIQSAI 104
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
21-119 5.88e-12

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 61.80  E-value: 5.88e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927    21 KAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDEQ---KCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVsdI 97
Cdd:smart00233   3 KEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKksyKPKGSIDLSGCTVREAPDPDSSKKPHCFEIKTSDRKT--L 80
                           90       100
                   ....*....|....*....|..
gi 444730927    98 KFQAPSGEEKESWIKALNEGIN 119
Cdd:smart00233  81 LLQAESEEEREKWVEALRKAIA 102
PH cd00821
Pleckstrin homology (PH) domain; PH domains have diverse functions, but in general are ...
21-114 8.20e-12

Pleckstrin homology (PH) domain; PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 275388 [Multi-domain]  Cd Length: 92  Bit Score: 61.02  E-value: 8.20e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  21 KAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDE--QKCVETVELGSYEKCQDLRAlLKRKHRFIlLRSPGNKVsdIK 98
Cdd:cd00821    1 KEGYLLKRGGGGLKSWKKRWFVLFEGVLLYYKSKKDssYKPKGSIPLSGILEVEEVSP-KERPHCFE-LVTPDGRT--YY 76
                         90
                 ....*....|....*.
gi 444730927  99 FQAPSGEEKESWIKAL 114
Cdd:cd00821   77 LQADSEEERQEWLKAL 92
PH_PEPP1_2_3 cd13248
Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain; ...
13-116 3.70e-09

Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain; PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270068  Cd Length: 104  Bit Score: 53.82  E-value: 3.70e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  13 PRGARTADKAGWIKKSSGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSY--EKCQdLRALLKRKHRFILLRsp 90
Cdd:cd13248    1 RDPNAPVVMSGWLHKQGGSGLKNWRKRWFVLKDNCLYYYKDPEEEKALGSILLPSYtiSPAP-PSDEISRKFAFKAEH-- 77
                         90       100
                 ....*....|....*....|....*....
gi 444730927  91 gnkvSDIK---FQAPSGEEKESWIKALNE 116
Cdd:cd13248   78 ----ANMRtyyFAADTAEEMEQWMNAMSL 102
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
225-428 4.00e-08

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 55.76  E-value: 4.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 225 SAGERAPSPVSASPEVHPDSQEDSETPAGADGGSEQPPNSVLSDKLKTSEAAAREGRKP---PTPPPKILSEKLKARMSG 301
Cdd:PRK07764 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHvavPDASDGGDGWPAKAGGAA 677
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 302 MEASGPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRCSSLGDLLGEG 381
Cdd:PRK07764 678 PAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQ 757
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 444730927 382 PPRPRQPRELAETLLSQAVEQLRQAtrvlQEMRDSGEPSPGAPGLRE 428
Cdd:PRK07764 758 PPPPPAPAPAAAPAAAPPPSPPSEE----EEMAEDDAPSMDDEDRRD 800
PHA03247 PHA03247
large tegument protein UL36; Provisional
171-428 1.87e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 1.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  171 LRLDLDVPdSGPPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMTSlGDRVETSAGERAPSPVSASPEVHP-DSQEDSE 249
Cdd:PHA03247  248 LRGDIAAP-APPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAP-PDGVWGAALAGAPLALPAPPDPPPpAPAGDAE 325
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  250 TPAGADGGSEQPpnSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGP-APSPGAPEASAPDPAQvsvNG 328
Cdd:PHA03247  326 EEDDEDGAMEVV--SPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPtRKRRSARHAATPFARG---PG 400
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  329 VDDSPEPAQPAQATgSPGVIPKDALSSVAQPPQDlplqfhPRCSSLGDlLGEGPPRPRQPRELAETLLSQAVEQLRQATR 408
Cdd:PHA03247  401 GDDQTRPAAPVPAS-VPTPAPTPVPASAPPPPAT------PLPSAEPG-SDDGPAPPPERQPPAPATEPAPDDPDDATRK 472
                         250       260
                  ....*....|....*....|
gi 444730927  409 VLQEMRDSGEPSPGAPGLRE 428
Cdd:PHA03247  473 ALDALRERRPPEPPGADLAE 492
PH_3BP2 cd13308
SH3 domain-binding protein 2 Pleckstrin homology (PH) domain; SH3BP2 (the gene that encodes ...
17-120 3.14e-06

SH3 domain-binding protein 2 Pleckstrin homology (PH) domain; SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270118  Cd Length: 113  Bit Score: 45.86  E-value: 3.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  17 RTADKAGWIKKSSGGLLSL--WKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLrSPGNKV 94
Cdd:cd13308    7 RDVIHSGTLTKKGGSQKTLqnWQLRYVIIHQGCVYYYKNDQSAKPKGVFSLNGYNRRAAEERTSKLKFVFKII-HLSPDH 85
                         90       100
                 ....*....|....*....|....*.
gi 444730927  95 SDIKFQAPSGEEKESWIKALNEGINR 120
Cdd:cd13308   86 RTWYFAAKSEDEMSEWMEYIRREIDH 111
PH1_PH_fungal cd13298
Fungal proteins Pleckstrin homology (PH) domain, repeat 1; The functions of these fungal ...
21-116 7.98e-06

Fungal proteins Pleckstrin homology (PH) domain, repeat 1; The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270110  Cd Length: 106  Bit Score: 44.54  E-value: 7.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  21 KAGW-IKKSSGglLSLWKDRYLLLCQAQLLVYENEDE---QKCVETVELGSYEKCQDlralLKRKHRFILLrSPgNKVsd 96
Cdd:cd13298    8 KSGYlLKRSRK--TKNWKKRWVVLRPCQLSYYKDEKEyklRRVINLSELLAVAPLKD----KKRKNVFGIY-TP-SKN-- 77
                         90       100
                 ....*....|....*....|
gi 444730927  97 IKFQAPSGEEKESWIKALNE 116
Cdd:cd13298   78 LHFRATSEKDANEWVEALRE 97
PH_Boi cd13316
Boi family Pleckstrin homology domain; Yeast Boi proteins Boi1 and Boi2 are functionally ...
20-114 8.78e-06

Boi family Pleckstrin homology domain; Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270126  Cd Length: 97  Bit Score: 44.29  E-value: 8.78e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  20 DKAGWIKKSSGGLlSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYE-KCQDLRALLKRKHRFILLRSPGNKVSdiK 98
Cdd:cd13316    1 DHSGWMKKRGERY-GTWKTRYFVLKGTRLYYLKSENDDKEKGLIDLTGHRvVPDDSNSPFRGSYGFKLVPPAVPKVH--Y 77
                         90
                 ....*....|....*.
gi 444730927  99 FQAPSGEEKESWIKAL 114
Cdd:cd13316   78 FAVDEKEELREWMKAL 93
PH_GRP1-like cd01252
General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain; GRP1/cytohesin3 ...
20-120 2.90e-05

General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain; GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 269954  Cd Length: 119  Bit Score: 43.07  E-value: 2.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  20 DKAGWIKKSSGGLLSlWKDRYLLLCQAQLLVYENED--EQKCVETVELGSYEKCQDLrallKRKHRFILLRSPGNKVsdI 97
Cdd:cd01252    4 DREGWLLKLGGRVKS-WKRRWFILTDNCLYYFEYTTdkEPRGIIPLENLSVREVEDK----KKPFCFELYSPSNGQV--I 76
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 444730927  98 K-------------------FQAPSGEEKESWIKALNEGINR 120
Cdd:cd01252   77 KacktdsdgkvvegnhtvyrISAASEEERDEWIKSIKASISR 118
PH2_MyoX cd13296
Myosin X Pleckstrin homology (PH) domain, repeat 2; MyoX, a MyTH-FERM myosin, is a molecular ...
21-120 3.09e-05

Myosin X Pleckstrin homology (PH) domain, repeat 2; MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270108  Cd Length: 103  Bit Score: 42.84  E-value: 3.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  21 KAGWIKKSSGGLLSL----WKDRYLLLCQAQLLVYENEDE-QKCVETVELGSYEKCQDLRALlkrKHRFILlrspgnkVS 95
Cdd:cd13296    1 KSGWLTKKGGGSSTLsrrnWKSRWFVLRDTVLKYYENDQEgEKLLGTIDIRSAKEIVDNDPK---ENRLSI-------TT 70
                         90       100
                 ....*....|....*....|....*...
gi 444730927  96 DIK---FQAPSGEEKESWIKALNEGINR 120
Cdd:cd13296   71 EERtyhLVAESPEDASQWVNVLTRVISA 98
PHA03247 PHA03247
large tegument protein UL36; Provisional
163-424 3.29e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 3.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  163 ASAASDGLLRLDLDVPDSGPPVLAPSGDdSAAQPRETPRPLMPPTKSSPV--PEMTSLGDRVE--TSAGERAPSPVSASP 238
Cdd:PHA03247 2632 SPAANEPDPHPPPTVPPPERPRDDPAPG-RVSRPRRARRLGRAAQASSPPqrPRRRAARPTVGslTSLADPPPPPPTPEP 2710
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  239 EVHPDSQEDSETPAGADGGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEA-- 316
Cdd:PHA03247 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVas 2790
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  317 ---------SAPDPAQVSVngVDDSPEPAQPAQATGSPGVIPKDALSSVAQPPQDLPLQ-FHPRCSSL---GDLLGEGPP 383
Cdd:PHA03247 2791 lsesreslpSPWDPADPPA--AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPpSLPLGGSVapgGDVRRRPPS 2868
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 444730927  384 R--------PRQP--RELAETLLSQAVEQLRQATRVLQEMRDSGEPSPGAP 424
Cdd:PHA03247 2869 RspaakpaaPARPpvRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
221-426 5.47e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 5.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 221 RVETSAGERAPSPVSASPEVHPDSQEDSETPAGADGGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMS 300
Cdd:PRK12323 364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARG 443
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 301 GMEASGPAPSPGAPEASAPDPAQVSVNGVddsPEPAQPAQATGSPGVIPKDALSSVAqPPQDLPLQF-----HPRCSSLG 375
Cdd:PRK12323 444 PGGAPAPAPAPAAAPAAAARPAAAGPRPV---AAAAAAAPARAAPAAAPAPADDDPP-PWEELPPEFaspapAQPDAAPA 519
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 444730927 376 DLLGEGPPRP--RQPRELAETLLSQAVEQLRQATRVLQEMRDSGE-PSPGAPGL 426
Cdd:PRK12323 520 GWVAESIPDPatADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRpPRASASGL 573
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
178-388 6.13e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.55  E-value: 6.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  178 PDSGPPVLAPSGDDSAAQPRETPRPLMPPTkSSPVPEMTSLGDRVETSAGERAPSPVSASPEV-HPDSQEDSETPAGADG 256
Cdd:PHA03307  147 PPAASPPAAGASPAAVASDAASSRQAALPL-SSPEETARAPSSPPAEPPPSTPPAAASPRPPRrSSPISASASSPAPAPG 225
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  257 GSEQPPNSVLSDKLKTSEAA----AREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEASAPDPAQVSVNGVDDS 332
Cdd:PHA03307  226 RSAADDAGASSSDSSSSESSgcgwGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 444730927  333 PEPAQPAQATGSPGVIPKDALSSvaqpPQDLPLQFHPRCSSLGDLLGEGPPRPRQP 388
Cdd:PHA03307  306 GPAPSSPRASSSSSSSRESSSSS----TSSSSESSRGAAVSPGPSPSRSPSPSRPP 357
PHA03247 PHA03247
large tegument protein UL36; Provisional
180-424 6.54e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 6.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  180 SGPPVLAPSGDDSAAQPRETPRP----LMPPTKSSPVPEMTSLGDRVETSAGERAPSPVSASPEVHPDSQEDSETPAGAD 255
Cdd:PHA03247 2764 AGPPAPAPPAAPAAGPPRRLTRPavasLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  256 GgseqPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMeasgPAPSPGAPEASAPDPAqvsvngvdDSPEP 335
Cdd:PHA03247 2844 G----PPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL----ARPAVSRSTESFALPP--------DQPER 2907
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  336 AQPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRCSSLGDLLGEGPPRPRQPRELAETLLSQAVEQLRQATRVLQEMRD 415
Cdd:PHA03247 2908 PPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSRE 2987

                  ....*....
gi 444730927  416 SGEPSPGAP 424
Cdd:PHA03247 2988 APASSTPPL 2996
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
221-430 9.19e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 45.16  E-value: 9.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  221 RVETSAGERAPSPVSASPEVHPDSQEDSETPAGADGGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMS 300
Cdd:PHA03307   23 RPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  301 GMEASGPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQPAQATGSPGV-IPKDALSSVAQPPQDlplqfHPRCSSLGDLLG 379
Cdd:PHA03307  103 EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAaSPPAAGASPAAVASD-----AASSRQAALPLS 177
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 444730927  380 EGPPRPRQPRELAETL-LSQAVEQLRQATRVLQEMRDSGEPSPGAPGLREKR 430
Cdd:PHA03307  178 SPEETARAPSSPPAEPpPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229
PH_KIFIA_KIFIB cd01233
KIFIA and KIFIB protein pleckstrin homology (PH) domain; The kinesin-3 family motors KIFIA ...
36-115 1.28e-04

KIFIA and KIFIB protein pleckstrin homology (PH) domain; The kinesin-3 family motors KIFIA (Caenorhabditis elegans homolog unc-104) and KIFIB transport synaptic vesicle precursors that contain synaptic vesicle proteins, such as synaptophysin, synaptotagmin and the small GTPase RAB3A, but they do not transport organelles that contain plasma membrane proteins. They have a N-terminal motor domain, followed by a coiled-coil domain, and a C-terminal PH domain. KIF1A adopts a monomeric form in vitro, but acts as a processive dimer in vivo. KIF1B has alternatively spliced isoforms distinguished by the presence or absence of insertion sequences in the conserved amino-terminal region of the protein; this results in their different motor activities. KIF1A and KIF1B bind to RAB3 proteins through the adaptor protein mitogen-activated protein kinase (MAPK) -activating death domain (MADD; also calledDENN), which was first identified as a RAB3 guanine nucleotide exchange factor (GEF). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 269939  Cd Length: 103  Bit Score: 41.04  E-value: 1.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  36 WKDRYLLLCQAQLLVYENEDEqkcveTVELG--SYEKCQ-----DLRALLKRKHRFILLrSPGNKvsdIKFQAPSGEEKE 108
Cdd:cd01233   22 WVRRWVVLRRPYLHIYSSEKD-----GDERGviNLSTARveyspDQEALLGRPNVFAVY-TPTNS---YLLQARSEKEMQ 92

                 ....*..
gi 444730927 109 SWIKALN 115
Cdd:cd01233   93 DWLYAID 99
PH2_TAPP1_2 cd13271
Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal ...
12-120 1.32e-04

Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat; The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270090  Cd Length: 114  Bit Score: 41.19  E-value: 1.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  12 KPRGARTADKAGWIKKSsGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQ--DLRALLKRKHRFILLRS 89
Cdd:cd13271    1 RQRAGRNVIKSGYCVKQ-GAVRKNWKRRFFILDDNTISYYKSETDKEPLRTIPLREVLKVHecLVKSLLMRDNLFEIITT 79
                         90       100       110
                 ....*....|....*....|....*....|.
gi 444730927  90 pgNKVSDIkfQAPSGEEKESWIKALNEGINR 120
Cdd:cd13271   80 --SRTFYI--QADSPEEMHSWIKAISGAIVA 106
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
305-414 1.81e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.00  E-value: 1.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 305 SGPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQPAQATGSPGVIPKDALSSV-AQPPQDLPLQFHPRCSSlgdllGEGPP 383
Cdd:PRK14971 384 TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVpVNPPSTAPQAVRPAQFK-----EEKKI 458
                         90       100       110
                 ....*....|....*....|....*....|.
gi 444730927 384 RPRQPRELAETLLSQAVEQLRQATRVLQEMR 414
Cdd:PRK14971 459 PVSKVSSLGPSTLRPIQEKAEQATGNIKEAP 489
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
179-375 1.82e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 1.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 179 DSGPPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMTSLGDRVETSAGERAPSPVSASPEVHPDSQEDSetpAGADGGS 258
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQAS---ARGPGGA 447
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 259 EQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAP---SPGAPEASAPDPAQVSVNGVD--DSP 333
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPweeLPPEFASPAPAQPDAAPAGWVaeSIP 527
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 444730927 334 EPAQPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRCSSLG 375
Cdd:PRK12323 528 DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
176-349 3.50e-04

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 42.45  E-value: 3.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 176 DVPDSGPPVLApsGDDSAAQpretprpLMPPTKSSPVPEMTSLGDRvETSAGERAPSPVSASPEVHPDSQEDSETPAGAD 255
Cdd:NF040712 169 DPGAHGGTVTA--LDDEARW-------LIDPDFGRPLRPLATVPRL-AREPADARPEEVEPAPAAEGAPATDSDPAEAGT 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 256 GGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEASAPDPAQV--SVNGVDDSP 333
Cdd:NF040712 239 PDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAApeAEEPARPEP 318
                        170
                 ....*....|....*.
gi 444730927 334 EPAQPAQATGSPGVIP 349
Cdd:NF040712 319 PPAPKPKRRRRRASVP 334
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
183-361 4.01e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 4.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 183 PVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMTSLGDRVETSAGERAPSPVSASPEVHPDSQEDsETPAGADGGSEQPP 262
Cdd:PRK07003 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDA-RAPAAASREDAPAA 524
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 263 NSVLSDKLKTSEAAAREGRKPPTPPPKILSeklKARMSGMEAS-------GPAPSPGAPEASAPDPAqvsvngvddSPEP 335
Cdd:PRK07003 525 AAPPAPEARPPTPAAAAPAARAGGAAAALD---VLRNAGMRVSsdrgaraAAAAKPAAAPAAAPKPA---------APRV 592
                        170       180
                 ....*....|....*....|....*.
gi 444730927 336 AQPAQATGSPGVIPKDALSSVAQPPQ 361
Cdd:PRK07003 593 AVQVPTPRARAATGDAPPNGAARAEQ 618
PH_Cla4_Ste20 cd13279
Pleckstrin homology (PH) domain; Budding yeast contain two main p21-activated kinases (PAKs), ...
21-111 4.16e-04

Pleckstrin homology (PH) domain; Budding yeast contain two main p21-activated kinases (PAKs), Cla4 and Ste20. The yeast Ste20 protein kinase is involved in pheromone response, though the function of Ste20 mammalian homologs is unknown. Cla4 is involved in budding and cytokinesis and interacts with Cdc42, a GTPase required for polarized cell growth as is Pak. Cla4 and Ste20 kinases share a function in localizing cell growth with respect to the septin ring. They both contain a PH domain, a Cdc42/Rac interactive binding (CRIB) domain, and a C-terminal Protein Kinase catalytic (PKc) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270097  Cd Length: 92  Bit Score: 39.15  E-value: 4.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  21 KAGWIKKSSGGLLSL-WKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQ--DLRAllkrkHRFILLRSPGNKVSDI 97
Cdd:cd13279    3 KSGWVSVKEDGLLSFrWSKRYLVLREQSLDFYKNESSSSASLSIPLKDISNVSrtDLKP-----YCFEIVRKSSTKSIYI 77
                         90
                 ....*....|....
gi 444730927  98 KFQapSGEEKESWI 111
Cdd:cd13279   78 SVK--SDDELYDWM 89
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
163-355 4.22e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 4.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 163 ASAASDGLLRLDLDVPDSGPPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMTSLGDRVETSAGERAPSPVSASPEVHP 242
Cdd:PRK07764 633 AAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG 712
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 243 DSQEDSETPAGADGGSEQPPnsvlsdklktsEAAAREGRKPPTPPPkilsEKLKARMSGMEASGPAPSPGAPEASAPDPA 322
Cdd:PRK07764 713 QADDPAAQPPQAAQGASAPS-----------PAADDPVPLPPEPDD----PPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777
                        170       180       190
                 ....*....|....*....|....*....|....
gi 444730927 323 QVSVNGVD-DSPEPAQPAQATGSPGVIPKDALSS 355
Cdd:PRK07764 778 PPSEEEEMaEDDAPSMDDEDRRDAEEVAMELLEE 811
PH_TAAP2-like cd13255
Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain; The binding of TAPP2 ...
21-116 4.42e-04

Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain; The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270075  Cd Length: 110  Bit Score: 39.70  E-value: 4.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  21 KAGWIKKSsGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELGSYEKCQDLRalLKRKHRFILLRSPGNKvsdIKFQ 100
Cdd:cd13255    8 KAGYLEKK-GERRKTWKKRWFVLRPTKLAYYKNDKEYRLLRLIDLTDIHTCTEVQ--LKKHDNTFGIVTPART---FYVQ 81
                         90
                 ....*....|....*.
gi 444730927 101 APSGEEKESWIKALNE 116
Cdd:cd13255   82 ADSKAEMESWISAINL 97
PH_RhoGap24 cd13379
Rho GTPase activating protein 24 Pleckstrin homology (PH) domain; RhoGap24 (also called ...
21-107 5.03e-04

Rho GTPase activating protein 24 Pleckstrin homology (PH) domain; RhoGap24 (also called ARHGAP24, p73RhoGAp, and Filamin-A-associated RhoGAP) like other RhoGAPs are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 241530  Cd Length: 114  Bit Score: 39.57  E-value: 5.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  21 KAGWIKKSsGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVELgsyekcqdlrallkrkhrfillrsPGNKVSdikfQ 100
Cdd:cd13379    5 KCGWLRKQ-GGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGTIFL------------------------PGNRVT----E 55

                 ....*..
gi 444730927 101 APSGEEK 107
Cdd:cd13379   56 HPCNEEE 62
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
220-353 5.56e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 5.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 220 DRVETSAGERAPSPVSASPEVHPDSQEDSETPAGADGGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARM 299
Cdd:PRK07764 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP 458
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 444730927 300 SGMEASGPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQPAQATGSPGVIPKDAL 353
Cdd:PRK07764 459 AAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
186-364 7.28e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 7.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 186 APSGDDSAAQPRETPRPLMPPTKSSPVPEMTSLGDRVETSAGERAPSPVSASPEVHPDSQEDSETPAGADGGSEQP---P 262
Cdd:PRK07003 367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAadgD 446
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 263 NSVLSDKLKTSEAAAREGRKPPTPPPKilseklKARMSGMEASGPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQPAQAT 342
Cdd:PRK07003 447 APVPAKANARASADSRCDERDAQPPAD------SGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRED 520
                        170       180
                 ....*....|....*....|..
gi 444730927 343 GSPGVIPKDALSSVAQPPQDLP 364
Cdd:PRK07003 521 APAAAAPPAPEARPPTPAAAAP 542
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
177-424 9.96e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 9.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  177 VPDSGPPVLAPSgdDSAAQPRETPRPLMPPTKSSPVPEMTS-LGDRVETSAGERAPSPVSASPEVHPDSQEDSETPAGA- 254
Cdd:PHA03307   44 VSDSAELAAVTV--VAGAAACDRFEPPTGPPPGPGTEAPANeSRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTp 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  255 -DGGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEAsAPDPAQVSVNGVDDSP 333
Cdd:PHA03307  122 pPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETAR-APSSPPAEPPPSTPPA 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  334 EPAQPAQATGSPGVI------PKDALSSVAQPPQDLPLQFHPRCSSLGDLLGEGPPRPRQPRELAETLLSQAVEQLRQAT 407
Cdd:PHA03307  201 AASPRPPRRSSPISAsasspaPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS 280
                         250
                  ....*....|....*..
gi 444730927  408 RVLQEMRDSGEPSPGAP 424
Cdd:PHA03307  281 RPGPASSSSSPRERSPS 297
PHA03247 PHA03247
large tegument protein UL36; Provisional
150-369 1.04e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  150 RRRPPTRVHLKEVASAASDGLLRLDLDVPDSGPPVLAPSGDDSAAQPRETPRP----LMPPTKSSPVPEMTSLGDRVETS 225
Cdd:PHA03247 2566 RSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPpdthAPDPPPPSPSPAANEPDPHPPPT 2645
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  226 AGERA-PSPVSASPEVHPDSQEDSET-PAGADGGSEQPPNSVLSDKLKTSEAAAR--EGRKPPTPPPKILSEKLKARMSG 301
Cdd:PHA03247 2646 VPPPErPRDDPAPGRVSRPRRARRLGrAAQASSPPQRPRRRAARPTVGSLTSLADppPPPPTPEPAPHALVSATPLPPGP 2725
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 444730927  302 MEASGPAPSPGAPEASAPDPAQVSVNGVDDS----------PEPAQPA-QATGSPGVIPKDALSSVAQPPQDLPLQFHP 369
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARparppttagpPAPAPPAaPAAGPPRRLTRPAVASLSESRESLPSPWDP 2804
PHA03247 PHA03247
large tegument protein UL36; Provisional
178-424 1.14e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  178 PDSGPPVLAPSGDDSAAQPreTPRPLMPPTKSSPVPEMTSlgdrvETSAGERAP----SPVSASPEVHPDSQEDSETPAG 253
Cdd:PHA03247 2484 AEARFPFAAGAAPDPGGGG--PPDPDAPPAPSRLAPAILP-----DEPVGEPVHprmlTWIRGLEELASDDAGDPPPPLP 2556
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  254 ADGGSEQPPNSVLSDKL--KTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEASAPDP---------A 322
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPapRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPpppspspaaN 2636
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  323 QVSVNGVDDSPEPAQPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRCSSLGDLLGE-----GPPRPRQPRELAETLLS 397
Cdd:PHA03247 2637 EPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSltslaDPPPPPPTPEPAPHALV 2716
                         250       260
                  ....*....|....*....|....*..
gi 444730927  398 QAVEqlrqATRVLQEMRDSGEPSPGAP 424
Cdd:PHA03247 2717 SATP----LPPGPAAARQASPALPAAP 2739
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
200-360 1.17e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.39  E-value: 1.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 200 PRPLMPPTKSSPVPEMTSLGDRVETSAG---ERAPSPVSASPEVHPDSQEDSETPAGADGgSEQPPNSVLSDKLKTSEAA 276
Cdd:PRK07994 366 PEPEVPPQSAAPAASAQATAAPTAAVAPpqaPAVPPPPASAPQQAPAVPLPETTSQLLAA-RQQLQRAQGATKAKKSEPA 444
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 277 AREGRKPPTPPPKILSEKlkarmsgmeasGPAPSPGAPEASAPDPAQVsvngvddspEPAQPAQATGSPGVIPKDALSSV 356
Cdd:PRK07994 445 AASRARPVNSALERLASV-----------RPAPSALEKAPAKKEAYRW---------KATNPVEVKKEPVATPKALKKAL 504

                 ....
gi 444730927 357 AQPP 360
Cdd:PRK07994 505 EHEK 508
PHA03269 PHA03269
envelope glycoprotein C; Provisional
228-359 1.61e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.87  E-value: 1.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 228 ERAPSPVSaSPEVHPDSQEDSETPAGAdggseqpPNSVLSDKLKTSEAAAREGRKPPTP---PPKILSEKLKarmsgmea 304
Cdd:PHA03269  20 ANLNTNIP-IPELHTSAATQKPDPAPA-------PHQAASRAPDPAVAPTSAASRKPDLaqaPTPAASEKFD-------- 83
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 444730927 305 sgPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQP----AQATGSPGVIPKDALSSVAQP 359
Cdd:PHA03269  84 --PAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAftsaAQAHEAPADAGTSAASKKPDP 140
PHA03378 PHA03378
EBNA-3B; Provisional
165-387 2.55e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 40.44  E-value: 2.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 165 AASDGLLRLDLDVPDSGPPVLAPSGDDSAAQPR-------ETPRPLMPPTKSSPVPEMTSLGDrvETSAGERAPSPVSAS 237
Cdd:PHA03378 554 ASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLAssapsyaQTPWPVPHPSQTPEPPTTQSHIP--ETSAPRQWPMPLRPI 631
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 238 PEVHPDSQEDSETPAGadGGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEAS 317
Cdd:PHA03378 632 PMRPLRMQPITFNVLV--FPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAA 709
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 318 APDPAQVSVNGVDDSPEP------AQPAQATGSPgVIPKDALSSVAQPPQDLPLQFHPRCSSLGDLL----GEGPPRPRQ 387
Cdd:PHA03378 710 PPGRAQRPAAATGRARPPaaapgrARPPAAAPGR-ARPPAAAPGRARPPAAAPGRARPPAAAPGAPTpqppPQAPPAPQQ 788
PH_Sbf1_hMTMR5 cd01235
Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain; Sbf1 is a ...
23-115 3.55e-03

Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain; Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 269941  Cd Length: 106  Bit Score: 36.93  E-value: 3.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  23 GWIKKSsGGLLSLWKDRYLLL--CQAQLLVYENEDEQKCVETVELgsyekcQDLRALLKRKHRFILLRSPGNK-VSDIK- 98
Cdd:cd01235    7 GYLYKR-GALLKGWKQRWFVLdsTKHQLRYYESREDTKCKGFIDL------AEVESVTPATPIIGAPKRADEGaFFDLKt 79
                         90       100
                 ....*....|....*....|...
gi 444730927  99 ------FQAPSGEEKESWIKALN 115
Cdd:cd01235   80 nkrvynFCAFDAESAQQWIEKIQ 102
PH_RhoGap25-like cd13263
Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain; ...
21-114 3.66e-03

Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain; RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270083  Cd Length: 114  Bit Score: 36.98  E-value: 3.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  21 KAGWIKKSsGGLLSLWKDRYLLLCQAQLLVYENEDEQKCVETVEL-GSyeKCQDLRALLKRKHRFILLRSPGNKVSDIK- 98
Cdd:cd13263    5 KSGWLKKQ-GSIVKNWQQRWFVLRGDQLYYYKDEDDTKPQGTIPLpGN--KVKEVPFNPEEPGKFLFEIIPGGGGDRMTs 81
                         90       100
                 ....*....|....*....|..
gi 444730927  99 ------FQAPSGEEKESWIKAL 114
Cdd:cd13263   82 nhdsylLMANSQAEMEEWVKVI 103
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
251-377 4.21e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 4.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 251 PAGADGGSEQPPNSVLSDKLKTSEAAAREGRKP----PTPPPKILSEKLKARMSGMEASGPAPSPGAPEASAPDPAQVSV 326
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAaapaPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 444730927 327 NGVDDSPEPAQPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRCSSLGDL 377
Cdd:PRK14951 446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
182-322 5.41e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.38  E-value: 5.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  182 PPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMTSLGDR------VETSAGERAPSPVSASPEVHPDSQEDSETPAGAD 255
Cdd:PHA03307  760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPgrlrrsGPAADAASRTASKRKSRSHTPDGGSESSGPARPP 839
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 444730927  256 GGSEQPPNSVLSDKLKTSEAAARegrkpptPPPKILSEKLKARMSGMEASGPAPSPGAPEASAPDPA 322
Cdd:PHA03307  840 GAAARPPPARSSESSKSKPAAAG-------GRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAG 899
PH_RASA1 cd13260
RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain; RASA1 ...
18-114 5.94e-03

RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain; RASA1 (also called RasGap1 or p120) is a member of the RasGAP family of GTPase-activating proteins. RASA1 contains N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Splice variants lack the N-terminal domains. It is a cytosolic vertebrate protein that acts as a suppressor of RAS via its C-terminal GAP domain function, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. Additionally, it is involved in mitogenic signal transmission towards downstream interacting partners through its N-terminal SH2-SH3-SH2 domains. RASA1 interacts with a number of proteins including: G3BP1, SOCS3, ANXA6, Huntingtin, KHDRBS1, Src, EPHB3, EPH receptor B2, Insulin-like growth factor 1 receptor, PTK2B, DOK1, PDGFRB, HCK, Caveolin 2, DNAJA3, HRAS, GNB2L1 and NCK1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270080  Cd Length: 103  Bit Score: 36.17  E-value: 5.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  18 TADKAGWIKKSSGGLlSLWKDRYLLL--CQAQLLVYENEDEQKCVETVELGSYEKCQDLRALLKRKHRFILLRSPGNKVS 95
Cdd:cd13260    2 GIDKKGYLLKKGGKN-KKWKNLYFVLegKEQHLYFFDNEKRTKPKGLIDLSYCSLYPVHDSLFGRPNCFQIVVRALNEST 80
                         90
                 ....*....|....*....
gi 444730927  96 DIKFQAPSGEEKESWIKAL 114
Cdd:cd13260   81 ITYLCADTAELAQEWMRAL 99
dnaA PRK14086
chromosomal replication initiator protein DnaA;
171-346 6.85e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 38.65  E-value: 6.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 171 LRLDLDVPDSGPPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMTslgDRVET-SAGERAPSPVSASPEVHPDSQEDSE 249
Cdd:PRK14086  82 IRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRAD---DRPPGlPRQDQLPTARPAYPAYQQRPEPGAW 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 250 TPAGADGGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASG-------------PAPSPGA--- 313
Cdd:PRK14086 159 PRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRpdwdrprrdrtdrPEPPPGAghv 238
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 444730927 314 PEASAPDPAQVSVNGVDD-----SPEPAQPAQATGSPG 346
Cdd:PRK14086 239 HRGGPGPPERDDAPVVPIrpsapGPLAAQPAPAPGPGE 276
PH_CpORP2-like cd13293
Cryptosporidium-like Oxysterol binding protein related protein 2 Pleckstrin homology (PH) ...
23-114 7.83e-03

Cryptosporidium-like Oxysterol binding protein related protein 2 Pleckstrin homology (PH) domain; There are 2 types of ORPs found in Cryptosporidium: CpORP1 and CpORP2. Cryptosporium differs from other apicomplexans like Plasmodium, Toxoplasma, and Eimeria which possess only a single long-type ORP consisting of an N-terminal PH domain followed by a C-terminal ligand binding (LB) domain. CpORP2 is like this, but CpORP1 differs and has a truncated N-terminus resulting in only having a LB domain present. The exact functions of these proteins are largely unknown though CpORP1 is thought to be involved in lipid transport across the parasitophorous vacuole membrane. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 241447  Cd Length: 88  Bit Score: 35.38  E-value: 7.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  23 GWIKKSSGgLLSLWKDRYLLLCQAqLLVYENEDEQKCVETVELgsyeKCQDLRALLKRKHRFILlRSPGNkvsDIKFQAP 102
Cdd:cd13293    3 GYLKKWTN-IFNSWKPRYFILYPG-ILCYSKQKGGPKKGTIHL----KICDIRLVPDDPLRIII-NTGTN---QLHLRAS 72
                         90
                 ....*....|..
gi 444730927 103 SGEEKESWIKAL 114
Cdd:cd13293   73 SVEEKLKWYNAL 84
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
178-365 8.18e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 38.61  E-value: 8.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  178 PDSGPPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMTSLGDRV-----ETSAGERAPSPVSASPEVHPDSQEDSETPA 252
Cdd:PHA03307  251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSpspspSSPGSGPAPSSPRASSSSSSSRESSSSSTS 330
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  253 GADGGSEQPPNSvlsdklkTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEASAPDPAQVSVNGVDDS 332
Cdd:PHA03307  331 SSSESSRGAAVS-------PGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDA 403
                         170       180       190
                  ....*....|....*....|....*....|...
gi 444730927  333 PEPaqpaQATGSPGVIPKDALSSVAQPPQDLPL 365
Cdd:PHA03307  404 TGR----FPAGRPRPSPLDAGAASGAFYARYPL 432
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
178-398 8.86e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 8.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 178 PDSGPPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEmtslgDRVETSAGERAPSPVSASPEVHPDSQEDSETPAGADGG 257
Cdd:PRK07764 615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPE-----HHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAA 689
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927 258 SEQPpnsvlsdklkTSEAAAREGRKPPTPPPKILSEKLKARMSGMEASGPAPSPGAPEASAPDPAQVSVNGVDDSPEPAQ 337
Cdd:PRK07764 690 PAAP----------AGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP 759
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 444730927 338 PAQATGSPGviPKDALSSVAQPPQDLPlqfhprcsSLGDLLGEGPPRPRQ-PRELAETLLSQ 398
Cdd:PRK07764 760 PPPAPAPAA--APAAAPPPSPPSEEEE--------MAEDDAPSMDDEDRRdAEEVAMELLEE 811
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
153-389 9.38e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 38.61  E-value: 9.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  153 PPTRVHLKEVASAASDGLLRLDLDVPDSGPPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMtslgDRVETSAGERAPS 232
Cdd:PHA03307   75 PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEM----LRPVGSPGPPPAA 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  233 PVSASPEVHPDSQEDSETPAGA------DGGSEQPPNSVLSDKLKTSEAAAREGRKPPTPPPkilseklkarmSGMEASG 306
Cdd:PHA03307  151 SPPAAGASPAAVASDAASSRQAalplssPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP-----------ISASASS 219
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  307 PAPSPGAPEASAPDPAQVSVNGVDDSPEPAQPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRCSSlgdllGEGPPRPR 386
Cdd:PHA03307  220 PAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPAS-----SSSSPRER 294

                  ...
gi 444730927  387 QPR 389
Cdd:PHA03307  295 SPS 297
PRK10263 PRK10263
DNA translocase FtsK; Provisional
182-408 9.70e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 38.53  E-value: 9.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  182 PPVLAPSGDDSAAQPRETPRPLMPPTKSSPVPEMTslgDRVETSAGERAPSPVSASPEVHPDSQEDSETPAGADGgSEQP 261
Cdd:PRK10263  405 QPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPE---QPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEP-LYQQ 480
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  262 PNSVLSDKLKTSEAAAREgRKPPTPPPKILSEKLKARMSGMEASG--------PAPSPGAPEASAPDPAQVSVNGVDDSP 333
Cdd:PRK10263  481 PQPVEQQPVVEPEPVVEE-TKPARPPLYYFEEVEEKRAREREQLAawyqpipePVKEPEPIKSSLKAPSVAAVPPVEAAA 559
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 444730927  334 EPAqPAQATGSPGVIPKDALSSVAQPPQDLPLQFHPRcSSLGDLLGEGPPRP---RQP--RELAE---TLLSQ--AVEQL 403
Cdd:PRK10263  560 AVS-PLASGVKKATLATGAAATVAAPVFSLANSGGPR-PQVKEGIGPQLPRPkriRVPtrRELASygiKLPSQraAEEKA 637

                  ....*
gi 444730927  404 RQATR 408
Cdd:PRK10263  638 REAQR 642
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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