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Conserved domains on  [gi|387592674|gb|EIJ87698|]
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hypothetical protein NEQG_02245 [Nematocida parisii ERTm3]

Protein Classification

Dcp1 family protein( domain architecture ID 11161685)

mRNA-decapping enzyme subunit 1 (Dcp1) family protein is a component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay

CATH:  2.30.29.30
Gene Ontology:  GO:0016787|GO:0006397|GO:0098745|GO:0000184|GO:0110156|GO:0003729|GO:0008047
PubMed:  27183195|15189161|15901504
SCOP:  4000901

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DCP1 pfam06058
Dcp1-like decapping family; An essential step in mRNA turnover is decapping. In yeast, two ...
 8-125 3.87e-32

Dcp1-like decapping family; An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (pfam05026). The precise role of these proteins in the decapping reaction have not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2.


:

Pssm-ID: 461816  Cd Length: 117  Bit Score: 110.34  E-value: 3.87e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387592674    8 TNEVTNRMLKGKDAQYSHLLLTSINVLVLKY---ENKWINTCTEGAIHLYKRKIIPSTCILVLNRKAPADFHLLIDKaVH 84
Cdd:pfam06058   1 RRELNLRVLQRHDPSIESILDTASHVVLYKFdseSNEWEKTGIEGTLFVVKRSAEPRYGLIVLNRLSTENLIEPITK-EL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 387592674   85 GIEIFDRFIIIKIAHKkeiEVFGLWFYDKQSCAQAGSILTD 125
Cdd:pfam06058  80 ELELQDPYLIYRNEDG---EIYGIWFYDEEDCERIANLLKR 117
 
Name Accession Description Interval E-value
DCP1 pfam06058
Dcp1-like decapping family; An essential step in mRNA turnover is decapping. In yeast, two ...
 8-125 3.87e-32

Dcp1-like decapping family; An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (pfam05026). The precise role of these proteins in the decapping reaction have not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2.


Pssm-ID: 461816  Cd Length: 117  Bit Score: 110.34  E-value: 3.87e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387592674    8 TNEVTNRMLKGKDAQYSHLLLTSINVLVLKY---ENKWINTCTEGAIHLYKRKIIPSTCILVLNRKAPADFHLLIDKaVH 84
Cdd:pfam06058   1 RRELNLRVLQRHDPSIESILDTASHVVLYKFdseSNEWEKTGIEGTLFVVKRSAEPRYGLIVLNRLSTENLIEPITK-EL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 387592674   85 GIEIFDRFIIIKIAHKkeiEVFGLWFYDKQSCAQAGSILTD 125
Cdd:pfam06058  80 ELELQDPYLIYRNEDG---EIYGIWFYDEEDCERIANLLKR 117
EVH1-like_Dcp1 cd13182
Decapping enzyme EVH1-like domain; Dcp1 is a small protein containing an EVH1 domain. The ...
 11-127 3.53e-24

Decapping enzyme EVH1-like domain; Dcp1 is a small protein containing an EVH1 domain. The Dcp1-Dcp2 complex plays a critical step in mRNA degradation with the removal of the 50 cap structure. Dcp1 stimulates the activity of Dcp2 by promoting and/or stabilizing the closed complex. The interface of Dcp1 and Dcp2 is not fully conserved and in higher eukaryotes it requires an additional factor. The proline-rich sequence (PRS)-binding sites in Dcp1p indicates that it belongs to a novel class of EVH1 domains. Dcp1 has 2 prominent sites,one required for the function of the Dcp1p-Dcp2p complex, and the other, the PRS-binding site of EVH1 domains, a binding site for decapping regulatory proteins. It also has a conserved hydrophobic patch is shown to be critical for decapping. The EVH1 domains are part of the PH domain superamily.


Pssm-ID: 270003  Cd Length: 116  Bit Score: 89.89  E-value: 3.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387592674  11 VTNRMLKGKDAQYSHLLLTSINVLVLKY---ENKWINTCTEGAIHLYKRKIIPSTCILVLNRKAPADFHLLIDKaVHGIE 87
Cdd:cd13182    1 LNLAVLQRYDPYIEEILDTASHVVLYKFdddSNEWEKTDVEGTLFVYKRSAAPRYGFIVLNRLSPENFVEDITP-ELEVE 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 387592674  88 IFDRFIIIKIAhkkEIEVFGLWFYDKQSCAQAGSILTDQL 127
Cdd:cd13182   80 LQDPFLIYRNE---DGEIYGIWFYDEDDRERIYKLLEKLL 116
 
Name Accession Description Interval E-value
DCP1 pfam06058
Dcp1-like decapping family; An essential step in mRNA turnover is decapping. In yeast, two ...
 8-125 3.87e-32

Dcp1-like decapping family; An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (pfam05026). The precise role of these proteins in the decapping reaction have not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2.


Pssm-ID: 461816  Cd Length: 117  Bit Score: 110.34  E-value: 3.87e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387592674    8 TNEVTNRMLKGKDAQYSHLLLTSINVLVLKY---ENKWINTCTEGAIHLYKRKIIPSTCILVLNRKAPADFHLLIDKaVH 84
Cdd:pfam06058   1 RRELNLRVLQRHDPSIESILDTASHVVLYKFdseSNEWEKTGIEGTLFVVKRSAEPRYGLIVLNRLSTENLIEPITK-EL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 387592674   85 GIEIFDRFIIIKIAHKkeiEVFGLWFYDKQSCAQAGSILTD 125
Cdd:pfam06058  80 ELELQDPYLIYRNEDG---EIYGIWFYDEEDCERIANLLKR 117
EVH1-like_Dcp1 cd13182
Decapping enzyme EVH1-like domain; Dcp1 is a small protein containing an EVH1 domain. The ...
 11-127 3.53e-24

Decapping enzyme EVH1-like domain; Dcp1 is a small protein containing an EVH1 domain. The Dcp1-Dcp2 complex plays a critical step in mRNA degradation with the removal of the 50 cap structure. Dcp1 stimulates the activity of Dcp2 by promoting and/or stabilizing the closed complex. The interface of Dcp1 and Dcp2 is not fully conserved and in higher eukaryotes it requires an additional factor. The proline-rich sequence (PRS)-binding sites in Dcp1p indicates that it belongs to a novel class of EVH1 domains. Dcp1 has 2 prominent sites,one required for the function of the Dcp1p-Dcp2p complex, and the other, the PRS-binding site of EVH1 domains, a binding site for decapping regulatory proteins. It also has a conserved hydrophobic patch is shown to be critical for decapping. The EVH1 domains are part of the PH domain superamily.


Pssm-ID: 270003  Cd Length: 116  Bit Score: 89.89  E-value: 3.53e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387592674  11 VTNRMLKGKDAQYSHLLLTSINVLVLKY---ENKWINTCTEGAIHLYKRKIIPSTCILVLNRKAPADFHLLIDKaVHGIE 87
Cdd:cd13182    1 LNLAVLQRYDPYIEEILDTASHVVLYKFdddSNEWEKTDVEGTLFVYKRSAAPRYGFIVLNRLSPENFVEDITP-ELEVE 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 387592674  88 IFDRFIIIKIAhkkEIEVFGLWFYDKQSCAQAGSILTDQL 127
Cdd:cd13182   80 LQDPFLIYRNE---DGEIYGIWFYDEDDRERIYKLLEKLL 116
Dcp1 cd09804
mRNA decapping enzyme 1 (Dcp1); mRNA decapping enzyme 1 (Dcp1), together with Dcp2, is part of ...
 14-123 3.22e-12

mRNA decapping enzyme 1 (Dcp1); mRNA decapping enzyme 1 (Dcp1), together with Dcp2, is part of the decapping complex which catalyzes the removal of the 5' cap structure of mRNA. This decapping reaction is an essential step in mRNA degradation, by exposing the 5' end for exonucleolytic digestion. Dcp1 binds to the N-terminal helical domain of catalytic subunit Dcp2 and enhances its function by promoting Dsp2's closed conformation which is catalytically more active.


Pssm-ID: 197362  Cd Length: 121  Bit Score: 59.08  E-value: 3.22e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 387592674  14 RMLKGKDAQYSHLLLTSINVLVLKY---ENKWINTCTEGAIHLYKRKIIPSTCILVLNRKAPADFHLLIDKAVHgIEIFD 90
Cdd:cd09804    9 KVLQRHDPYIVSILDTASHVAVYEFdddTNEWEKTDVEGTLFVYKRSAEPRYGFIILNRLSTENLIEPITPELE-LELQD 87

                         90       100       110
                 ....*....|....*....|....*....|...
gi 387592674  91 RFIIIKiahKKEIEVFGLWFYDKQSCAQAGSIL 123
Cdd:cd09804   88 PYLIYR---NANGEIYGIWFYDEEDRERIYKLL 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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