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Conserved domains on  [gi|355566447|gb|EHH22826|]
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Cytokine-induced protein [Macaca mulatta]

Protein Classification

CGR1 family protein( domain architecture ID 11145969)

CGR1 family protein similar to rRNA-processing proteins, CgrA and CGR1, which are involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 236-338 1.53e-13

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


:

Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 66.11  E-value: 1.53e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  236 PKGKPKSGRVWKDRsKKRFSQMLQDKPLRT-SWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRKAENLKRRLENER 314
Cdd:pfam03879   1 PKGMRVSGKPWKAE-KKAFRRSSLVVGPKSkSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....
gi 355566447  315 KAEVVQVIrNPAKLKRAKKKQLRS 338
Cdd:pfam03879  80 YEELAAKM-HAKKVERLKRKEKRN 102
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 3-223 6.28e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 6.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447    3 TPLRRSRRLGGLRPESPESLTSVSRVRRALVELQSNPEETREPGSPPSVQQAGLGSPErPPETSPGSPRLQQGAGLESPQ 82
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-GPLPPPTSAQPTAPPPPPGPP 2846

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447   83 VQPEPGPGSPQRQQDLHLESPQRQPESRPESPRCQPKSSEEASKCSQDQGVLASELAQSKEELTPGAPQHQLPPGPGSPE 162
Cdd:PHA03247 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 355566447  163 PYPgqQAPGPEPSQPLLELTPKAPGSPRGQHEPSKPPPAGETVTGGLGAKKRKGSSSQAPA 223
Cdd:PHA03247 2927 PQP--QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985
 
Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 236-338 1.53e-13

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 66.11  E-value: 1.53e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  236 PKGKPKSGRVWKDRsKKRFSQMLQDKPLRT-SWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRKAENLKRRLENER 314
Cdd:pfam03879   1 PKGMRVSGKPWKAE-KKAFRRSSLVVGPKSkSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....
gi 355566447  315 KAEVVQVIrNPAKLKRAKKKQLRS 338
Cdd:pfam03879  80 YEELAAKM-HAKKVERLKRKEKRN 102
PHA03247 PHA03247
large tegument protein UL36; Provisional
 3-223 6.28e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 6.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447    3 TPLRRSRRLGGLRPESPESLTSVSRVRRALVELQSNPEETREPGSPPSVQQAGLGSPErPPETSPGSPRLQQGAGLESPQ 82
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-GPLPPPTSAQPTAPPPPPGPP 2846

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447   83 VQPEPGPGSPQRQQDLHLESPQRQPESRPESPRCQPKSSEEASKCSQDQGVLASELAQSKEELTPGAPQHQLPPGPGSPE 162
Cdd:PHA03247 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 355566447  163 PYPgqQAPGPEPSQPLLELTPKAPGSPRGQHEPSKPPPAGETVTGGLGAKKRKGSSSQAPA 223
Cdd:PHA03247 2927 PQP--QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 25-251 7.50e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 38.21  E-value: 7.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  25 VSRVRRALVELQSNPEETREPGSPPSVQQAGLGSPERPPETSPGSPRLQQGAGLESPQVQPEPGPGSPQRQQDLHLESPQ 104
Cdd:NF033839 272 VTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPK 351

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447 105 RQPESRPESPRCQPKSSEEASKCSQDQgvlASELAQSKEELTPGAPQHQLPPGPGSPEPYPGQQAPGPEPSQPLLELTPK 184
Cdd:NF033839 352 PEVKPQPEKPKPEVKPQPEKPKPEVKP---QPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPK 428

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 355566447 185 APGSPRGQHEPSKPPPAGETVTGGLGAKKRKGSSSQAPASKKLNKEELPVIPKGKPKSGRVWKDRSK 251
Cdd:NF033839 429 PEVKPQPEKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKK 495
 
Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 236-338 1.53e-13

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 66.11  E-value: 1.53e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  236 PKGKPKSGRVWKDRsKKRFSQMLQDKPLRT-SWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRKAENLKRRLENER 314
Cdd:pfam03879   1 PKGMRVSGKPWKAE-KKAFRRSSLVVGPKSkSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....
gi 355566447  315 KAEVVQVIrNPAKLKRAKKKQLRS 338
Cdd:pfam03879  80 YEELAAKM-HAKKVERLKRKEKRN 102
PHA03247 PHA03247
large tegument protein UL36; Provisional
 3-223 6.28e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 6.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447    3 TPLRRSRRLGGLRPESPESLTSVSRVRRALVELQSNPEETREPGSPPSVQQAGLGSPErPPETSPGSPRLQQGAGLESPQ 82
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-GPLPPPTSAQPTAPPPPPGPP 2846

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447   83 VQPEPGPGSPQRQQDLHLESPQRQPESRPESPRCQPKSSEEASKCSQDQGVLASELAQSKEELTPGAPQHQLPPGPGSPE 162
Cdd:PHA03247 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 355566447  163 PYPgqQAPGPEPSQPLLELTPKAPGSPRGQHEPSKPPPAGETVTGGLGAKKRKGSSSQAPA 223
Cdd:PHA03247 2927 PQP--QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985
dnaA PRK14086
chromosomal replication initiator protein DnaA;
34-204 8.89e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 44.43  E-value: 8.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  34 ELQSNPEETRE--PGSPPSVQQAGLGSPERPPETSPGSPRLQQgagleSPQVQPEPGPGSPQRQQDLHLESPQRQPESRP 111
Cdd:PRK14086 109 ELPRPGRRPYEgyGGPRADDRPPGLPRQDQLPTARPAYPAYQQ-----RPEPGAWPRAADDYGWQQQRLGFPPRAPYASP 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447 112 ESP-----RCQPKSSEEASKCSQDQGvlaSELAQSKEELTPGAPQHQLP-PGPGSPEPYPGQQAPGPEPSQPLLELTPKA 185
Cdd:PRK14086 184 ASYapeqeRDREPYDAGRPEYDQRRR---DYDHPRPDWDRPRRDRTDRPePPPGAGHVHRGGPGPPERDDAPVVPIRPSA 260

                        170
                 ....*....|....*....
gi 355566447 186 PGSPRGQHEPSkPPPAGET 204
Cdd:PRK14086 261 PGPLAAQPAPA-PGPGEPT 278
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 78-206 1.40e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.92  E-value: 1.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447   78 LESPQVQPEPGPGSPQRQQDLHLESPQR-QPESRPESPRcQPKSSEEASKCSQDQGVLASELAQSKEELTPgAPQHQLPP 156
Cdd:PRK10263  744 LFTPIVEPVQQPQQPVAPQQQYQQPQQPvAPQPQYQQPQ-QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP-QPQYQQPQ 821

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 355566447  157 GPGSPEP--YPGQQAPGPEPSQPLLELTPKAPGSPRGQHEPSKPPPAGETVT 206
Cdd:PRK10263  822 QPVAPQPqyQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLT 873
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 38-200 6.79e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.60  E-value: 6.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  38 NPEETREPGSPPSvqqaglgsPERPpeTSPGSPRLQQGAGLESPQVQPEPgPGSPQRQQDLHLESPQRQPES-----RPE 112
Cdd:PTZ00449 590 DPEEPKKPKRPRS--------AQRP--TRPKSPKLPELLDIPKSPKRPES-PKSPKRPPPPQRPSSPERPEGpkiikSPK 658

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447 113 SPRcQPKSSEEASKCSQDQGVLASELAQSKEELTPGAPQHQLPPGPGSPEP-YPGQQAPGPEPSQPLLELTPKAPGSPRG 191
Cdd:PTZ00449 659 PPK-SPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPeTPGTPFTTPRPLPPKLPRDEEFPFEPIG 737


                 ....*....
gi 355566447 192 qhEPSKPPP 200
Cdd:PTZ00449 738 --DPDAEQP 744
dnaA PRK14086
chromosomal replication initiator protein DnaA;
42-205 7.19e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 41.35  E-value: 7.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  42 TREPGSPPSVQQAGLGSPERPPETSPGSPRLQqgaGLESPQVQPEPGPGSPQRQQDLHLESPQRQ---PESRPESPRCQ- 117
Cdd:PRK14086  75 SRELGRPIRIAITVDPSAGEPAPPPPHARRTS---EPELPRPGRRPYEGYGGPRADDRPPGLPRQdqlPTARPAYPAYQq 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447 118 -------PKSSEEASKCSQDQGVLASELAQSKEELTPGAPQHQLPPGPGSPE---PYPGQQAPGPEPSQPLLELTPKAPG 187
Cdd:PRK14086 152 rpepgawPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEydqRRRDYDHPRPDWDRPRRDRTDRPEP 231

                        170
                 ....*....|....*...
gi 355566447 188 SPRGQHEPSKPPPAGETV 205
Cdd:PRK14086 232 PPGAGHVHRGGPGPPERD 249
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-227 1.17e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447   26 SRVRRALVELQSN-PEETREPGSPPSVQQAGLGSPE-----RPPETSPGSPRLQQGAGLESPQVQPE-----PGPGSPQR 94
Cdd:PHA03247 2584 SRARRPDAPPQSArPRAPVDDRGDPRGPAPPSPLPPdthapDPPPPSPSPAANEPDPHPPPTVPPPErprddPAPGRVSR 2663

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447   95 QQDLHLESPQRQPESRPESPRCQPKSSEEASKCSqdqgvLASELAQSKE---ELTPGAPQHQLPPGP----GSPEPYPGQ 167
Cdd:PHA03247 2664 PRRARRLGRAAQASSPPQRPRRRAARPTVGSLTS-----LADPPPPPPTpepAPHALVSATPLPPGPaaarQASPALPAA 2738

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  168 QAPGPEPSQPLLELTPKAPGSPRGQHEPSKPPPAGETVTGGLGAKKRKGSSSQAPASKKL 227
Cdd:PHA03247 2739 PAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 36-221 2.35e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 2.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  36 QSNPEETREPGSPPSVQQAGLGSPERPPETSPGSPRLQQGAGLESPQVQPEPGPGSPQRQQDLHLESPQRQPESRPESPR 115
Cdd:PRK07764 626 APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447 116 CQPKSSEeaskcsQDQGVLASELAQSKEELTPGAPQHQLPPGPGSPEPYPGQQAPGPEPSQPLLELTPKAPGSPRGQHEP 195
Cdd:PRK07764 706 AATPPAG------QADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779

                        170       180
                 ....*....|....*....|....*.
gi 355566447 196 SKPPPAGETVTGGLGAKKRKGSSSQA 221
Cdd:PRK07764 780 SEEEEMAEDDAPSMDDEDRRDAEEVA 805
dnaA PRK14086
chromosomal replication initiator protein DnaA;
43-184 2.69e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 39.81  E-value: 2.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  43 REPGSPPSV------QQAGLGSPERPPETSPGSPRLQQGAGLESPQVQPepgPGSPQRQQDLHLESPQRQPESRPESPRC 116
Cdd:PRK14086 153 PEPGAWPRAaddygwQQQRLGFPPRAPYASPASYAPEQERDREPYDAGR---PEYDQRRRDYDHPRPDWDRPRRDRTDRP 229

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 355566447 117 QPKSSEEASKCSQDQGVLASElaqskeeltpgapQHQLPPGPGSPEPYPGQQAPGPEPSQPLLELTPK 184
Cdd:PRK14086 230 EPPPGAGHVHRGGPGPPERDD-------------APVVPIRPSAPGPLAAQPAPAPGPGEPTARLNPK 284
PHA03247 PHA03247
large tegument protein UL36; Provisional
 16-201 2.91e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447   16 PESPESLTSVSRVRRA--------LVELQSNPEETREPGSPPSVQQ----AGLGSPERPPETSPGS-------PRLQQGA 76
Cdd:PHA03247 2649 PERPRDDPAPGRVSRPrrarrlgrAAQASSPPQRPRRRAARPTVGSltslADPPPPPPTPEPAPHAlvsatplPPGPAAA 2728

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447   77 GLESPQVQPEPGP----------------GSPQRQQDLHLESPQRQPESRPesPRCQPKSSEEASKCSQDQGVLASELAQ 140
Cdd:PHA03247 2729 RQASPALPAAPAPpavpagpatpggparpARPPTTAGPPAPAPPAAPAAGP--PRRLTRPAVASLSESRESLPSPWDPAD 2806

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 355566447  141 SKEELTPGAPQHQLPPGPGSPEPYP--GQQAPGPEPSQPLLELTPK----APGSPRGQHEPSKPPPA 201
Cdd:PHA03247 2807 PPAAVLAPAAALPPAASPAGPLPPPtsAQPTAPPPPPGPPPPSLPLggsvAPGGDVRRRPPSRSPAA 2873
PTZ00234 PTZ00234
variable surface protein Vir12; Provisional
 120-243 4.45e-03

variable surface protein Vir12; Provisional


Pssm-ID: 240324 [Multi-domain]  Cd Length: 433  Bit Score: 38.85  E-value: 4.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447 120 SSEEASKCSQ--DQGVLASELAQSKEELTPGAPQHQLPP--GPGSPEPYPGQQAPGPEpsQPLLELTPKAPGsprgqhep 195
Cdd:PTZ00234 200 GSTDYADCSTkyNPNPLITELAKCKTQGSNGSQSSFLGWfwGSSSPKTAPSKGSPGAQ--EPAKTAVVKSPG-------- 269

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 355566447 196 sKPPPAGETVTGGLGAKKRKGSSSQAPASKK--LNKEE--LPVIPKGKPKSG 243
Cdd:PTZ00234 270 -GIPSAGGKRAGAEGAGANKGLASVAPSQSRevLNGTQnpVPVAPLGSSQAG 320
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 30-201 5.69e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 38.69  E-value: 5.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  30 RAL----VELQSNPEETREPGSPPSVQQAglgsPERPPETSPGSPRLQQGAGLESPQVQPEPGPGSPQRQQDLHLESPQR 105
Cdd:PRK07994 355 RMLafhpAAPLPEPEVPPQSAAPAASAQA----TAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQ 430

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447 106 QPESRPESPRCQPKSSEEASKcsqdqgvlaseLAQSKEELTPGAPQHQLPPGPGSPEPYPGQQAPGPEPSQPLLELTPKA 185
Cdd:PRK07994 431 RAQGATKAKKSEPAAASRARP-----------VNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499

                        170
                 ....*....|....*.
gi 355566447 186 PGSPRgQHEPSKPPPA 201
Cdd:PRK07994 500 LKKAL-EHEKTPELAA 514
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 25-251 7.50e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 38.21  E-value: 7.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447  25 VSRVRRALVELQSNPEETREPGSPPSVQQAGLGSPERPPETSPGSPRLQQGAGLESPQVQPEPGPGSPQRQQDLHLESPQ 104
Cdd:NF033839 272 VTKFKKGLTQDTPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPK 351

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 355566447 105 RQPESRPESPRCQPKSSEEASKCSQDQgvlASELAQSKEELTPGAPQHQLPPGPGSPEPYPGQQAPGPEPSQPLLELTPK 184
Cdd:NF033839 352 PEVKPQPEKPKPEVKPQPEKPKPEVKP---QPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPK 428

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 355566447 185 APGSPRGQHEPSKPPPAGETVTGGLGAKKRKGSSSQAPASKKLNKEELPVIPKGKPKSGRVWKDRSK 251
Cdd:NF033839 429 PEVKPQPEKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQADDKK 495
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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