hypothetical protein HMPREF0990_00025 [Lachnospiraceae bacterium 1_1_57FAA]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
CYK3 | COG5279 | Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain [Cell cycle ... |
81-212 | 1.04e-34 | |||
Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain [Cell cycle control, cell division, chromosome partitioning]; : Pssm-ID: 444090 [Multi-domain] Cd Length: 250 Bit Score: 131.29 E-value: 1.04e-34
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LRR_5 super family | cl37855 | BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ... |
340-458 | 2.75e-10 | |||
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. The actual alignment was detected with superfamily member pfam13306: Pssm-ID: 463839 [Multi-domain] Cd Length: 127 Bit Score: 57.94 E-value: 2.75e-10
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Dockerin_I | cd14256 | Type I dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein ... |
483-538 | 1.10e-08 | |||
Type I dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex. : Pssm-ID: 271215 [Multi-domain] Cd Length: 57 Bit Score: 51.39 E-value: 1.10e-08
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Name | Accession | Description | Interval | E-value | |||
CYK3 | COG5279 | Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain [Cell cycle ... |
81-212 | 1.04e-34 | |||
Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 444090 [Multi-domain] Cd Length: 250 Bit Score: 131.29 E-value: 1.04e-34
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Transglut_core | pfam01841 | Transglutaminase-like superfamily; This family includes animal transglutaminases and other ... |
91-185 | 2.80e-22 | |||
Transglutaminase-like superfamily; This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease. Pssm-ID: 376628 [Multi-domain] Cd Length: 108 Bit Score: 91.70 E-value: 2.80e-22
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TGc | smart00460 | Transglutaminase/protease-like homologues; Transglutaminases are enzymes that establish ... |
132-188 | 4.09e-13 | |||
Transglutaminase/protease-like homologues; Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events. Pssm-ID: 214673 Cd Length: 68 Bit Score: 64.33 E-value: 4.09e-13
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LRR_5 | pfam13306 | BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ... |
340-458 | 2.75e-10 | |||
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Pssm-ID: 463839 [Multi-domain] Cd Length: 127 Bit Score: 57.94 E-value: 2.75e-10
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Dockerin_I | cd14256 | Type I dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein ... |
483-538 | 1.10e-08 | |||
Type I dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex. Pssm-ID: 271215 [Multi-domain] Cd Length: 57 Bit Score: 51.39 E-value: 1.10e-08
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Dockerin_1 | pfam00404 | Dockerin type I domain; The dockerin repeat is the binding partner of the cohesin domain ... |
484-538 | 2.03e-04 | |||
Dockerin type I domain; The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium. This family contains two copies of the repeat. Pssm-ID: 459805 [Multi-domain] Cd Length: 56 Bit Score: 39.47 E-value: 2.03e-04
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Name | Accession | Description | Interval | E-value | |||
CYK3 | COG5279 | Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain [Cell cycle ... |
81-212 | 1.04e-34 | |||
Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 444090 [Multi-domain] Cd Length: 250 Bit Score: 131.29 E-value: 1.04e-34
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Transglut_core | pfam01841 | Transglutaminase-like superfamily; This family includes animal transglutaminases and other ... |
91-185 | 2.80e-22 | |||
Transglutaminase-like superfamily; This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease. Pssm-ID: 376628 [Multi-domain] Cd Length: 108 Bit Score: 91.70 E-value: 2.80e-22
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YebA | COG1305 | Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, ... |
84-187 | 9.43e-21 | |||
Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440916 [Multi-domain] Cd Length: 174 Bit Score: 89.68 E-value: 9.43e-21
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TGc | smart00460 | Transglutaminase/protease-like homologues; Transglutaminases are enzymes that establish ... |
132-188 | 4.09e-13 | |||
Transglutaminase/protease-like homologues; Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events. Pssm-ID: 214673 Cd Length: 68 Bit Score: 64.33 E-value: 4.09e-13
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LRR_5 | pfam13306 | BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ... |
340-458 | 2.75e-10 | |||
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Pssm-ID: 463839 [Multi-domain] Cd Length: 127 Bit Score: 57.94 E-value: 2.75e-10
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Dockerin_I | cd14256 | Type I dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein ... |
483-538 | 1.10e-08 | |||
Type I dockerin repeat domain; Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex. Pssm-ID: 271215 [Multi-domain] Cd Length: 57 Bit Score: 51.39 E-value: 1.10e-08
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LRR_5 | pfam13306 | BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich ... |
327-451 | 1.14e-07 | |||
BspA type Leucine rich repeat region (6 copies); This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Pssm-ID: 463839 [Multi-domain] Cd Length: 127 Bit Score: 50.62 E-value: 1.14e-07
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Dockerin | cd14253 | Dockerin repeat domain; Dockerins are modules in the cellulosome complex that often anchor ... |
484-537 | 6.01e-05 | |||
Dockerin repeat domain; Dockerins are modules in the cellulosome complex that often anchor catalytic subunits by binding to cohesin domains of scaffolding proteins. Three types of dockerins and their corresponding cohesin have been described in the literature. This alignment models two consecutive dockerin repeats, the functional unit. Pssm-ID: 271212 Cd Length: 56 Bit Score: 40.87 E-value: 6.01e-05
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Dockerin_1 | pfam00404 | Dockerin type I domain; The dockerin repeat is the binding partner of the cohesin domain ... |
484-538 | 2.03e-04 | |||
Dockerin type I domain; The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium. This family contains two copies of the repeat. Pssm-ID: 459805 [Multi-domain] Cd Length: 56 Bit Score: 39.47 E-value: 2.03e-04
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Gln_amidase | pfam15644 | Papain fold toxin 1, glutamine deamidase; A papain fold toxin domain found in bacterial ... |
140-185 | 2.29e-03 | |||
Papain fold toxin 1, glutamine deamidase; A papain fold toxin domain found in bacterial polymorphic toxin systems. In these systems they might function either as a releasing peptidase or toxin. In Shigella flexneri, UniProtKB:Q8VSD5, this protein is expressed from a plasmid, and delivered into the host via the type III secretion system where it deamidates the glutamine residue at position 100 in ubiquitin-activating enzyme E2, UBC13, to a glutamic acid residue. Invasion of host cells by pathogens normally invokes an acute inflammatory response through activating the TRAF6-mediated signalling pathway. UBC13 helps to activate TRAF6. Thus deamidation of UBC13 results in the dampening of the inflammatory response. The key glutaminase deamidase activity is mediated by a cys-his-glu triad, present in all members of the family. Pssm-ID: 434830 [Multi-domain] Cd Length: 113 Bit Score: 37.80 E-value: 2.29e-03
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Blast search parameters | ||||
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