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Conserved domains on  [gi|297319852|gb|EFH50274|]
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hypothetical protein ARALYDRAFT_488987, partial [Arabidopsis lyrata subsp. lyrata]

Protein Classification

SAUR-like auxin-responsive family protein( domain architecture ID 10494974)

SAUR-like auxin-responsive family protein similar to Arabidopsis thaliana SAUR proteins that may provide a mechanistic link between auxin and plasma membrane H+-ATPases (PM H+-ATPases)

Gene Ontology:  GO:0009733

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Auxin_inducible pfam02519
Auxin responsive protein; This family consists of the protein products of the ARG7 auxin ...
 11-103 8.57e-18

Auxin responsive protein; This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role.


:

Pssm-ID: 460580  Cd Length: 92  Bit Score: 72.29  E-value: 8.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297319852   11 LKSVLKKLNSFNTKPNQPQAQTNHGRSSAVsafPSEDLQTVYVGRTRRPYHVSSDVVSHPLFQQLAAVDGGCG--SEDGS 88
Cdd:pfam02519   1 LKQMARKWQKRAALGRKRISSPRTTSSSDV---PEKGHFVVYVGDERRRFVVPLEYLNHPLFRELLRMSEEEFgfPSDGP 77

                          90
                  ....*....|....*
gi 297319852   89 ISVSCEVVLFEHLLW 103
Cdd:pfam02519  78 ITLPCDVVVFEYLLS 92
 
Name Accession Description Interval E-value
Auxin_inducible pfam02519
Auxin responsive protein; This family consists of the protein products of the ARG7 auxin ...
 11-103 8.57e-18

Auxin responsive protein; This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role.


Pssm-ID: 460580  Cd Length: 92  Bit Score: 72.29  E-value: 8.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297319852   11 LKSVLKKLNSFNTKPNQPQAQTNHGRSSAVsafPSEDLQTVYVGRTRRPYHVSSDVVSHPLFQQLAAVDGGCG--SEDGS 88
Cdd:pfam02519   1 LKQMARKWQKRAALGRKRISSPRTTSSSDV---PEKGHFVVYVGDERRRFVVPLEYLNHPLFRELLRMSEEEFgfPSDGP 77

                          90
                  ....*....|....*
gi 297319852   89 ISVSCEVVLFEHLLW 103
Cdd:pfam02519  78 ITLPCDVVVFEYLLS 92
 
Name Accession Description Interval E-value
Auxin_inducible pfam02519
Auxin responsive protein; This family consists of the protein products of the ARG7 auxin ...
 11-103 8.57e-18

Auxin responsive protein; This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role.


Pssm-ID: 460580  Cd Length: 92  Bit Score: 72.29  E-value: 8.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297319852   11 LKSVLKKLNSFNTKPNQPQAQTNHGRSSAVsafPSEDLQTVYVGRTRRPYHVSSDVVSHPLFQQLAAVDGGCG--SEDGS 88
Cdd:pfam02519   1 LKQMARKWQKRAALGRKRISSPRTTSSSDV---PEKGHFVVYVGDERRRFVVPLEYLNHPLFRELLRMSEEEFgfPSDGP 77

                          90
                  ....*....|....*
gi 297319852   89 ISVSCEVVLFEHLLW 103
Cdd:pfam02519  78 ITLPCDVVVFEYLLS 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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