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Conserved domains on  [gi|241915178|gb|EER88322|]
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hypothetical protein SORBI_3010G132300 [Sorghum bicolor]

Protein Classification

CDK5RAP3 family protein( domain architecture ID 10528880)

CDK5 regulatory subunit-associated protein 3 (CDK5RAP3) family protein is a DUF773 domain-containing protein similar to vertebrate CDK5RAP3 that acts as a tumor suppressor initially identified as a CDK5R1 interactor controlling cell proliferation

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CDK5RAP3 pfam05600
CDK5 regulatory subunit-associated protein 3; This family contains several eukaryotic ...
7-539 0e+00

CDK5 regulatory subunit-associated protein 3; This family contains several eukaryotic sequences such as CDK5RAP3 (also known as C53 or LZAP) which serves as a probable tumour suppressor. Initially identified as a CDK5R1 interactor controlling cell proliferation. It negatively regulates NF-kappa-B-mediated gene transcription through the control of RELA phosphorylation. It also regulates mitotic G2/M transition checkpoint and mitotic G2 DNA damage checkpoint. It has been shown to bind Wip1 and stimulates its phosphatase activity.


:

Pssm-ID: 461688  Cd Length: 506  Bit Score: 600.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178    7 IRNLPIDIAFGRLQEWLVDRKRVPHDWRKRLAGIRARVASAFAALPrDLHPSLLALDPEEIGYLEARKIYGILLDSNTET 86
Cdd:pfam05600   1 EQNLPIDIQYSKLLDWLVDRRHCPKDWQKQLLAIREKINAAIQDMP-ENEEILQLLSGAYINYFHCLRIVEILKETEADS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178   87 RNIFGRLT-GSAGEWESIVKAYDKDHVFLGEAAQIMVQNVNYDIPYQRKQMQKTQQQLAELDRREADIKRLAALSATRYV 165
Cdd:pfam05600  80 KNIFGRYSsQRMKDWQEIVRLYEKDNVYLAEAAQILVRNVNYEIPGLKKQIAKLQQQLEELERKEADLKRSAALARAKYE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  166 EACQELGLQGINVREELIESAKTLPSTFSKILEALNSdpVSNAMEYYTTFVKDCHTEDMGNcVSVLHKLKELQAN----- 240
Cdd:pfam05600 160 EACKQLGIKGKNVREELLELVKDLPSLFEKIAESLKD--LSKAIEYYSAFVSFVHTESKKN-SEVLPLLKFLIEKgnttv 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  241 -------PPSLHVSVYNEIKSSLVEAPESHGqidsnvadDDIDW----DISVDANEIDWDIGAVE--QPVEESGNGfgsy 307
Cdd:pfam05600 237 yewrtgePPSKIEEPEVEVLTELQEAEEDDG--------KEIDWgddaDGEVDAAEIDWGLGAVAddDVAEDEGGE---- 304
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  308 eiIDanielagsenynvSVADKSLNKDLASSESGICWDITADSSEEIASIQNApsefeqpqsqmitedRSRLLEKEYRND 387
Cdd:pfam05600 305 --ID-------------WGDSDMADIDISVEESGIDVEEDVSVAGGVARGDDA---------------LSLLDDTEYRNQ 354
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  388 ILDDLLEVKSFLTQRLGEMRNADTSSLQHQVQAVSPFVLQQHAPDSLENMLVEVSSAISLLTNQKTLDLIMILNSKRFLD 467
Cdd:pfam05600 355 FIDDLLELEAFLKQRLVELSNESTDVLSHQQFQSAPDVLQSQTPEEIEQMLSAVESALSLLTNPKTQHLFLIKTSPRYVD 434
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 241915178  468 RLVSTLEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAITKTRELKKLCESTLSSVFDGRPVHIIG 539
Cdd:pfam05600 435 RLVASLEQKLKQEEKLKESLKDLEEKREEARNQLSELEPKLELLIEKTRELQKLIEKDLSKRYKGRPVNLMG 506
 
Name Accession Description Interval E-value
CDK5RAP3 pfam05600
CDK5 regulatory subunit-associated protein 3; This family contains several eukaryotic ...
7-539 0e+00

CDK5 regulatory subunit-associated protein 3; This family contains several eukaryotic sequences such as CDK5RAP3 (also known as C53 or LZAP) which serves as a probable tumour suppressor. Initially identified as a CDK5R1 interactor controlling cell proliferation. It negatively regulates NF-kappa-B-mediated gene transcription through the control of RELA phosphorylation. It also regulates mitotic G2/M transition checkpoint and mitotic G2 DNA damage checkpoint. It has been shown to bind Wip1 and stimulates its phosphatase activity.


Pssm-ID: 461688  Cd Length: 506  Bit Score: 600.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178    7 IRNLPIDIAFGRLQEWLVDRKRVPHDWRKRLAGIRARVASAFAALPrDLHPSLLALDPEEIGYLEARKIYGILLDSNTET 86
Cdd:pfam05600   1 EQNLPIDIQYSKLLDWLVDRRHCPKDWQKQLLAIREKINAAIQDMP-ENEEILQLLSGAYINYFHCLRIVEILKETEADS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178   87 RNIFGRLT-GSAGEWESIVKAYDKDHVFLGEAAQIMVQNVNYDIPYQRKQMQKTQQQLAELDRREADIKRLAALSATRYV 165
Cdd:pfam05600  80 KNIFGRYSsQRMKDWQEIVRLYEKDNVYLAEAAQILVRNVNYEIPGLKKQIAKLQQQLEELERKEADLKRSAALARAKYE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  166 EACQELGLQGINVREELIESAKTLPSTFSKILEALNSdpVSNAMEYYTTFVKDCHTEDMGNcVSVLHKLKELQAN----- 240
Cdd:pfam05600 160 EACKQLGIKGKNVREELLELVKDLPSLFEKIAESLKD--LSKAIEYYSAFVSFVHTESKKN-SEVLPLLKFLIEKgnttv 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  241 -------PPSLHVSVYNEIKSSLVEAPESHGqidsnvadDDIDW----DISVDANEIDWDIGAVE--QPVEESGNGfgsy 307
Cdd:pfam05600 237 yewrtgePPSKIEEPEVEVLTELQEAEEDDG--------KEIDWgddaDGEVDAAEIDWGLGAVAddDVAEDEGGE---- 304
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  308 eiIDanielagsenynvSVADKSLNKDLASSESGICWDITADSSEEIASIQNApsefeqpqsqmitedRSRLLEKEYRND 387
Cdd:pfam05600 305 --ID-------------WGDSDMADIDISVEESGIDVEEDVSVAGGVARGDDA---------------LSLLDDTEYRNQ 354
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  388 ILDDLLEVKSFLTQRLGEMRNADTSSLQHQVQAVSPFVLQQHAPDSLENMLVEVSSAISLLTNQKTLDLIMILNSKRFLD 467
Cdd:pfam05600 355 FIDDLLELEAFLKQRLVELSNESTDVLSHQQFQSAPDVLQSQTPEEIEQMLSAVESALSLLTNPKTQHLFLIKTSPRYVD 434
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 241915178  468 RLVSTLEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAITKTRELKKLCESTLSSVFDGRPVHIIG 539
Cdd:pfam05600 435 RLVASLEQKLKQEEKLKESLKDLEEKREEARNQLSELEPKLELLIEKTRELQKLIEKDLSKRYKGRPVNLMG 506
 
Name Accession Description Interval E-value
CDK5RAP3 pfam05600
CDK5 regulatory subunit-associated protein 3; This family contains several eukaryotic ...
7-539 0e+00

CDK5 regulatory subunit-associated protein 3; This family contains several eukaryotic sequences such as CDK5RAP3 (also known as C53 or LZAP) which serves as a probable tumour suppressor. Initially identified as a CDK5R1 interactor controlling cell proliferation. It negatively regulates NF-kappa-B-mediated gene transcription through the control of RELA phosphorylation. It also regulates mitotic G2/M transition checkpoint and mitotic G2 DNA damage checkpoint. It has been shown to bind Wip1 and stimulates its phosphatase activity.


Pssm-ID: 461688  Cd Length: 506  Bit Score: 600.44  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178    7 IRNLPIDIAFGRLQEWLVDRKRVPHDWRKRLAGIRARVASAFAALPrDLHPSLLALDPEEIGYLEARKIYGILLDSNTET 86
Cdd:pfam05600   1 EQNLPIDIQYSKLLDWLVDRRHCPKDWQKQLLAIREKINAAIQDMP-ENEEILQLLSGAYINYFHCLRIVEILKETEADS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178   87 RNIFGRLT-GSAGEWESIVKAYDKDHVFLGEAAQIMVQNVNYDIPYQRKQMQKTQQQLAELDRREADIKRLAALSATRYV 165
Cdd:pfam05600  80 KNIFGRYSsQRMKDWQEIVRLYEKDNVYLAEAAQILVRNVNYEIPGLKKQIAKLQQQLEELERKEADLKRSAALARAKYE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  166 EACQELGLQGINVREELIESAKTLPSTFSKILEALNSdpVSNAMEYYTTFVKDCHTEDMGNcVSVLHKLKELQAN----- 240
Cdd:pfam05600 160 EACKQLGIKGKNVREELLELVKDLPSLFEKIAESLKD--LSKAIEYYSAFVSFVHTESKKN-SEVLPLLKFLIEKgnttv 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  241 -------PPSLHVSVYNEIKSSLVEAPESHGqidsnvadDDIDW----DISVDANEIDWDIGAVE--QPVEESGNGfgsy 307
Cdd:pfam05600 237 yewrtgePPSKIEEPEVEVLTELQEAEEDDG--------KEIDWgddaDGEVDAAEIDWGLGAVAddDVAEDEGGE---- 304
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  308 eiIDanielagsenynvSVADKSLNKDLASSESGICWDITADSSEEIASIQNApsefeqpqsqmitedRSRLLEKEYRND 387
Cdd:pfam05600 305 --ID-------------WGDSDMADIDISVEESGIDVEEDVSVAGGVARGDDA---------------LSLLDDTEYRNQ 354
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 241915178  388 ILDDLLEVKSFLTQRLGEMRNADTSSLQHQVQAVSPFVLQQHAPDSLENMLVEVSSAISLLTNQKTLDLIMILNSKRFLD 467
Cdd:pfam05600 355 FIDDLLELEAFLKQRLVELSNESTDVLSHQQFQSAPDVLQSQTPEEIEQMLSAVESALSLLTNPKTQHLFLIKTSPRYVD 434
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 241915178  468 RLVSTLEEKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAITKTRELKKLCESTLSSVFDGRPVHIIG 539
Cdd:pfam05600 435 RLVASLEQKLKQEEKLKESLKDLEEKREEARNQLSELEPKLELLIEKTRELQKLIEKDLSKRYKGRPVNLMG 506
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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