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Conserved domains on  [gi|239522665|gb|EEQ62531|]
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superinfection exclusion protein B family protein, partial [Clostridiales bacterium 1_7_47FAA]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SieB super family cl16671
Super-infection exclusion protein B; This family includes superinfection exclusion proteins. ...
 11-113 2.34e-20

Super-infection exclusion protein B; This family includes superinfection exclusion proteins. These proteins prevent the growth of superinfecting phage which are insensitive to repression. It aborts lytic development of superinfecting phage.


The actual alignment was detected with superfamily member pfam14163:

Pssm-ID: 433755  Cd Length: 147  Bit Score: 80.04  E-value: 2.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239522665   11 MYMIVIWVGLLLLSPDNWPEYVNerIG------IPHVWHVFVFALAFSLAINVHRLSAIASARYKRfklrkriKMQNDKV 84
Cdd:pfam14163   1 MLWLIIASGTLLFLPDSILEKLN--LGkfvteyGPWIGLVFLISIAYLLAIVIYKLVKEIKDRYAK-------KRRQKRV 71

                          90       100
                  ....*....|....*....|....*....
gi 239522665   85 RSVIQNLTEEQSMVLCAALNEGRKYVVTS 113
Cdd:pfam14163  72 EEKLKNLTEEEKAVLREFFLQGTRTLTLP 100
 
Name Accession Description Interval E-value
SieB pfam14163
Super-infection exclusion protein B; This family includes superinfection exclusion proteins. ...
 11-113 2.34e-20

Super-infection exclusion protein B; This family includes superinfection exclusion proteins. These proteins prevent the growth of superinfecting phage which are insensitive to repression. It aborts lytic development of superinfecting phage.


Pssm-ID: 433755  Cd Length: 147  Bit Score: 80.04  E-value: 2.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239522665   11 MYMIVIWVGLLLLSPDNWPEYVNerIG------IPHVWHVFVFALAFSLAINVHRLSAIASARYKRfklrkriKMQNDKV 84
Cdd:pfam14163   1 MLWLIIASGTLLFLPDSILEKLN--LGkfvteyGPWIGLVFLISIAYLLAIVIYKLVKEIKDRYAK-------KRRQKRV 71

                          90       100
                  ....*....|....*....|....*....
gi 239522665   85 RSVIQNLTEEQSMVLCAALNEGRKYVVTS 113
Cdd:pfam14163  72 EEKLKNLTEEEKAVLREFFLQGTRTLTLP 100
 
Name Accession Description Interval E-value
SieB pfam14163
Super-infection exclusion protein B; This family includes superinfection exclusion proteins. ...
 11-113 2.34e-20

Super-infection exclusion protein B; This family includes superinfection exclusion proteins. These proteins prevent the growth of superinfecting phage which are insensitive to repression. It aborts lytic development of superinfecting phage.


Pssm-ID: 433755  Cd Length: 147  Bit Score: 80.04  E-value: 2.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 239522665   11 MYMIVIWVGLLLLSPDNWPEYVNerIG------IPHVWHVFVFALAFSLAINVHRLSAIASARYKRfklrkriKMQNDKV 84
Cdd:pfam14163   1 MLWLIIASGTLLFLPDSILEKLN--LGkfvteyGPWIGLVFLISIAYLLAIVIYKLVKEIKDRYAK-------KRRQKRV 71

                          90       100
                  ....*....|....*....|....*....
gi 239522665   85 RSVIQNLTEEQSMVLCAALNEGRKYVVTS 113
Cdd:pfam14163  72 EEKLKNLTEEEKAVLREFFLQGTRTLTLP 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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