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Conserved domains on  [gi|223543429|gb|EEF44960|]
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mannosidase alpha class 2a, putative [Ricinus communis]

Protein Classification

glycoside hydrolase family 38 protein( domain architecture ID 11477069)

glycosyl hydrolase family 38 (GH38) protein such as human core-specific lysosomal alpha 1,6-mannosidase (Epman, Man2B2) which can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharide

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02701 PLN02701
alpha-mannosidase
129-1177 0e+00

alpha-mannosidase


:

Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 2182.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  129 VDITTKDLYDKIEFLDVDGGPWKQGWRVSYTGNEWDGEKLKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKD 208
Cdd:PLN02701    1 VDITTKDLYDRIEFLDKDGGAWKQGWRVKYRGDEWDREKLKVFVVPHSHNDPGWILTVEEYYQEQSRHILDTIVESLSKD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  209 VRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSW 288
Cdd:PLN02701   81 PRRKFIWEEMSYLERWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  289 AIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELARNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAI 368
Cdd:PLN02701  161 AIDPFGYSSTMAYLLRRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  369 CCQFDFARVHGFYYEMCPWGEHPVETSHENVQERAQKLLDQYRKKSTLYRTNTLLVPLGDDFRYISVDEAEAQFRNYQKL 448
Cdd:PLN02701  241 CCQFDFARMRGFQYELCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  449 FDYINSNPSLNAEAKFGTLEDYFQTLHEEADRINYSLPGEVGSGQIVGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAV 528
Cdd:PLN02701  321 FDYINSNPSLKAEVKFGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAV 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  529 DRVLEQTLRATEMMMSLLLGYCQRAQCEKLATGFGYKLTAARRNLALFQHHDGVTGTAKDHVVRDYGLRMHTSLQDLQIF 608
Cdd:PLN02701  401 DRVLEQTLRAAEILFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIF 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  609 MSKAVEVLLGIRHEKSDHNPSQFEAEQVRSKYDVQPVHKAISAREGTSHSVILFNPLEQTREEVVMVVVNRPHVAVLDSN 688
Cdd:PLN02701  481 MSAAVEVLLGIRHEKSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSN 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  689 WTCVQSQISPELQHDRTKIFTGRHRVYWKASVPAMGLQTYYIVNGFAGCEKAKPAKIKYFSVSKSFSCPPPYACTRIEDD 768
Cdd:PLN02701  561 WTCVPSQISPEWQHDGEKLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGD 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  769 EAEIQNQHQSLTFDVKLGLLRKIS-HRNGYKNFVGEEIGMYSSPESGAYLFKPDGDARPIVQAGGNMVISEGPLLQEVYS 847
Cdd:PLN02701  641 TVEISNSHQTLGFDVKTGLLRKIKiHKNGSETVVGEEIGMYSSQGSGAYLFKPDGEAQPIVQAGGLVVVSEGPLVQEVHS 720
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  848 QPKTAWEQTPISHSTRIYEGDDAVQGLIVEKEYHVELIGQDFNDKELIVRYKTDIDNRRILYSDLNGFQMSRRETYDKIP 927
Cdd:PLN02701  721 VPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGHDFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRETYDKIP 800
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  928 LQGNYYPMPSLAFMQGSNGQRFSVHSRQSLGVASLKEGWLEIMLDRRLVRDDGRGLGQGVMDNRPINVIFHIIVESNISA 1007
Cdd:PLN02701  801 LQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNRPMNVVFHLLLESNISS 880
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429 1008 tSNPVSNPLPLSPSLLSHCVGAHLNYPLHAFVAKNPQELSVQPPP-RSFSPLAAPLPCDLHMVNFKVPRPSKYSQQLIED 1086
Cdd:PLN02701  881 -SPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQATSVENPQdTSFAPLAKPLPCDLHIVNFKVPRPSKYSQQEAED 959
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429 1087 SRFVLILQRRHWDTSYYRKDRPQCTTLANGPLNLFNLFKGLAVLNAKATSLNLLHEDADMLGYSQQVGDVAQEGHVIISP 1166
Cdd:PLN02701  960 PRFGLLLQRRGWDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNLLHDDAEMLGYRKQAGSAAQEGIVLISP 1039
                        1050
                  ....*....|.
gi 223543429 1167 MEIQAYKLDLR 1177
Cdd:PLN02701 1040 MEIQAYKLDLR 1050
 
Name Accession Description Interval E-value
PLN02701 PLN02701
alpha-mannosidase
129-1177 0e+00

alpha-mannosidase


Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 2182.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  129 VDITTKDLYDKIEFLDVDGGPWKQGWRVSYTGNEWDGEKLKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKD 208
Cdd:PLN02701    1 VDITTKDLYDRIEFLDKDGGAWKQGWRVKYRGDEWDREKLKVFVVPHSHNDPGWILTVEEYYQEQSRHILDTIVESLSKD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  209 VRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSW 288
Cdd:PLN02701   81 PRRKFIWEEMSYLERWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  289 AIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELARNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAI 368
Cdd:PLN02701  161 AIDPFGYSSTMAYLLRRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  369 CCQFDFARVHGFYYEMCPWGEHPVETSHENVQERAQKLLDQYRKKSTLYRTNTLLVPLGDDFRYISVDEAEAQFRNYQKL 448
Cdd:PLN02701  241 CCQFDFARMRGFQYELCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  449 FDYINSNPSLNAEAKFGTLEDYFQTLHEEADRINYSLPGEVGSGQIVGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAV 528
Cdd:PLN02701  321 FDYINSNPSLKAEVKFGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAV 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  529 DRVLEQTLRATEMMMSLLLGYCQRAQCEKLATGFGYKLTAARRNLALFQHHDGVTGTAKDHVVRDYGLRMHTSLQDLQIF 608
Cdd:PLN02701  401 DRVLEQTLRAAEILFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIF 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  609 MSKAVEVLLGIRHEKSDHNPSQFEAEQVRSKYDVQPVHKAISAREGTSHSVILFNPLEQTREEVVMVVVNRPHVAVLDSN 688
Cdd:PLN02701  481 MSAAVEVLLGIRHEKSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSN 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  689 WTCVQSQISPELQHDRTKIFTGRHRVYWKASVPAMGLQTYYIVNGFAGCEKAKPAKIKYFSVSKSFSCPPPYACTRIEDD 768
Cdd:PLN02701  561 WTCVPSQISPEWQHDGEKLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGD 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  769 EAEIQNQHQSLTFDVKLGLLRKIS-HRNGYKNFVGEEIGMYSSPESGAYLFKPDGDARPIVQAGGNMVISEGPLLQEVYS 847
Cdd:PLN02701  641 TVEISNSHQTLGFDVKTGLLRKIKiHKNGSETVVGEEIGMYSSQGSGAYLFKPDGEAQPIVQAGGLVVVSEGPLVQEVHS 720
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  848 QPKTAWEQTPISHSTRIYEGDDAVQGLIVEKEYHVELIGQDFNDKELIVRYKTDIDNRRILYSDLNGFQMSRRETYDKIP 927
Cdd:PLN02701  721 VPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGHDFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRETYDKIP 800
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  928 LQGNYYPMPSLAFMQGSNGQRFSVHSRQSLGVASLKEGWLEIMLDRRLVRDDGRGLGQGVMDNRPINVIFHIIVESNISA 1007
Cdd:PLN02701  801 LQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNRPMNVVFHLLLESNISS 880
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429 1008 tSNPVSNPLPLSPSLLSHCVGAHLNYPLHAFVAKNPQELSVQPPP-RSFSPLAAPLPCDLHMVNFKVPRPSKYSQQLIED 1086
Cdd:PLN02701  881 -SPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQATSVENPQdTSFAPLAKPLPCDLHIVNFKVPRPSKYSQQEAED 959
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429 1087 SRFVLILQRRHWDTSYYRKDRPQCTTLANGPLNLFNLFKGLAVLNAKATSLNLLHEDADMLGYSQQVGDVAQEGHVIISP 1166
Cdd:PLN02701  960 PRFGLLLQRRGWDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNLLHDDAEMLGYRKQAGSAAQEGIVLISP 1039
                        1050
                  ....*....|.
gi 223543429 1167 MEIQAYKLDLR 1177
Cdd:PLN02701 1040 MEIQAYKLDLR 1050
GH38N_AMII_GMII_SfManIII_like cd10809
N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 ...
167-519 0e+00

N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells.


Pssm-ID: 212120 [Multi-domain]  Cd Length: 340  Bit Score: 660.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  167 KLKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLE 246
Cdd:cd10809     1 KLKVFVVPHSHNDPGWIKTFEEYYQDQTKHILDNMVDKLSKNPKMKFIWAEISFLERWWDDASPDKKEAVKKLVKNGQLE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  247 IVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELAR 326
Cdd:cd10809    81 IVTGGWVMTDEANSHYFAMIDQLIEGHQWLKENLGVKPKSGWSIDPFGHSPTMPYLLKRAGFKNMVIQRIHYEVKKYLAQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  327 NKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARVHGFyYEMCPWGEHPVETSHENVQERAQKL 406
Cdd:cd10809   161 RKALEFMWRQYWDATGSTDILTHMMPFYSYDIPHTCGPDPAVCCQFDFKRLPGG-GESCPWKKPPQPITDDNVAERAELL 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  407 LDQYRKKSTLYRTNTLLVPLGDDFRYISVDEAEAQFRNYQKLFDYINSNPSLNAEAKFGTLEDYFQTLHEEADRINyslp 486
Cdd:cd10809   240 LDQYRKKSQLYRSNVVLIPLGDDFRYDSDEEWDAQYDNYQKLFDYINSNPELNVEIQFGTLSDYFNALRKRTGTNT---- 315
                         330       340       350
                  ....*....|....*....|....*....|...
gi 223543429  487 gevgsgqiVGFPSLSGDFFTYADRQQDYWSGYY 519
Cdd:cd10809   316 --------PGFPTLSGDFFTYADRDDDYWSGYY 340
Glyco_hydro_38N pfam01074
Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of ...
169-508 4.53e-99

Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 426030 [Multi-domain]  Cd Length: 271  Bit Score: 315.34  E-value: 4.53e-99
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   169 KVFVVPHSHNDPGWKLTVDEYyERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKREsFTKLVKNGQLEIV 248
Cdd:pfam01074    1 TVHLVGHSHIDVGWLWTVDET-RRKVQRTFSSVLALLDRDPDRRFIWSEAQFFAWWWEDQPELFKR-IKKLVAEGRLEPV 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   249 GGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKElaRNK 328
Cdd:pfam01074   79 GGGWVEPDENLPSGESLIRQFLYGQRFFKEEFGVRPRVGWLPDPFGYSATLPQILKQAGIDYFLTQRLHWNDKNK--FNP 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   329 NLEYIWRQSWDaeetTDIFVHMMPFYSYdiphtcgpePAICCQFdfarvhgfyyemcpwgehpvetshenvQERAQKLLD 408
Cdd:pfam01074  157 HLEFIWRGSDG----TEIFTHMPPFDYY---------PTYGFQF---------------------------QERAEDLLA 196
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   409 QYRKKSTLYRTNTLLVPLGDDfryisvdeaEAQFRNYQKLFDYIN--SNPSLNAEAKFGTLEDYFQTLHEEadrinyslp 486
Cdd:pfam01074  197 YARNYADKTRTNHVLLPFGDG---------DGGGGPTDEMLEYINrwNALPGLPKVQYGTPSDYFDALEKA--------- 258
                          330       340
                   ....*....|....*....|..
gi 223543429   487 gevgsgqivGFPSLSGDFFTYA 508
Cdd:pfam01074  259 ---------TWPTKTDDFPPYA 271
Alpha-mann_mid smart00872
Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase ...
514-598 5.57e-25

Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 214875 [Multi-domain]  Cd Length: 79  Bit Score: 99.55  E-value: 5.57e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429    514 YWSGYYVSRPFFKAVDRVLEQTLRATEMMMSLLLgycqraqceKLATGFGY---KLTAARRNLALFQHHDGVTGTAKDHV 590
Cdd:smart00872    1 YHRGTYTSRPYLKRLNRRAESLLRAAEELAALAA---------LLSLGYKYpseQLEELWKALLLNQHHDAITGTSIDEV 71

                    ....*...
gi 223543429    591 VRDYGLRM 598
Cdd:smart00872   72 YDDYEKRL 79
MngB COG0383
Alpha-mannosidase [Carbohydrate transport and metabolism];
167-733 3.84e-17

Alpha-mannosidase [Carbohydrate transport and metabolism];


Pssm-ID: 440152 [Multi-domain]  Cd Length: 798  Bit Score: 86.82  E-value: 3.84e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  167 KLKVFVVPHSHNDPGWKLTVDEYYERQSRHIlDTIVSTLSKDvrrkfiwEE------MSYLERWWRDATEEKRESFTKLV 240
Cdd:COG0383     5 KKKVHAVGHAHIDRAWLWPVEETRRKLARTF-STVLDLLEEY-------PEfvfdgsTAQLYDYLKEHYPELFERIKKLV 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  241 KNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYev 320
Cdd:COG0383    77 KEGRWEPVGGMWVEPDTNLPSGESLVRQLLYGQRFFKEEFGVDMKVGWLPDSFGYSAQLPQILKGAGIDYFVTQKGSW-- 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  321 kKELARNKNLEYIWRqswdAEETTDIFVHMMPF-YSYDIphtcgpepaiccqfdfarvhgfyyemcpwgeHPVEtshenv 399
Cdd:COG0383   155 -NDTNRFPYHTFWWE----GIDGSEVLTHFFPNgYNSGL-------------------------------DPEE------ 192
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  400 qerAQKLLDQYRKKStlyRTNTLLVP--LGDDFRYISVD--EAEAQFRNYQKLfdyinsnpslnAEAKFGTLEDYFQTLH 475
Cdd:COG0383   193 ---LAGAWRNFEQKA---VTDELLLPfgYGDGGGGPTREmlERARRLNDLPGL-----------PEVVISTPEDFFEALE 255
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  476 EEADRinyslpgevgsgqivgFPSLSGDFFTYADRqqdywsGYYVSRPFFKAVDRVLEQTLRATEMMMSLLlgycqraqc 555
Cdd:COG0383   256 EELPD----------------LPVWQGELYLELHR------GTYTSRADLKRLNRRAERLLREAEPLAALA--------- 304
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  556 ekLATGFGY---KLTAARRNLaLFQH-HDGVTGTAKDHVVRDyglrmhtSLQDLQifmsKAVEVLLGIRHEksdhnpsqf 631
Cdd:COG0383   305 --ALLGAEYpqeELDEAWKLL-LLNQfHDILPGSSIDEVYRE-------AEARYE----EALEEAESLIDE--------- 361
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  632 eaeqvrskydvqpVHKAISAR---EGTSHSVILFNPLEQTREEVVMVVV--NRPHVAVLDSNWTCVQSQISpelqHDRTK 706
Cdd:COG0383   362 -------------ALRAIAGAidlPEDGDPLVVFNTLPWPRSEVVELPLytPGKNFQLVDSDGKELPAQIL----EDGKI 424
                         570       580
                  ....*....|....*....|....*..
gi 223543429  707 IFtgrhrvyWKASVPAMGLQTYYIVNG 733
Cdd:COG0383   425 LF-------SAEDLPALGYKTLSLVEG 444
 
Name Accession Description Interval E-value
PLN02701 PLN02701
alpha-mannosidase
129-1177 0e+00

alpha-mannosidase


Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 2182.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  129 VDITTKDLYDKIEFLDVDGGPWKQGWRVSYTGNEWDGEKLKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKD 208
Cdd:PLN02701    1 VDITTKDLYDRIEFLDKDGGAWKQGWRVKYRGDEWDREKLKVFVVPHSHNDPGWILTVEEYYQEQSRHILDTIVESLSKD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  209 VRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSW 288
Cdd:PLN02701   81 PRRKFIWEEMSYLERWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVAPKNSW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  289 AIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELARNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAI 368
Cdd:PLN02701  161 AIDPFGYSSTMAYLLRRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  369 CCQFDFARVHGFYYEMCPWGEHPVETSHENVQERAQKLLDQYRKKSTLYRTNTLLVPLGDDFRYISVDEAEAQFRNYQKL 448
Cdd:PLN02701  241 CCQFDFARMRGFQYELCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  449 FDYINSNPSLNAEAKFGTLEDYFQTLHEEADRINYSLPGEVGSGQIVGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAV 528
Cdd:PLN02701  321 FDYINSNPSLKAEVKFGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAV 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  529 DRVLEQTLRATEMMMSLLLGYCQRAQCEKLATGFGYKLTAARRNLALFQHHDGVTGTAKDHVVRDYGLRMHTSLQDLQIF 608
Cdd:PLN02701  401 DRVLEQTLRAAEILFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIF 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  609 MSKAVEVLLGIRHEKSDHNPSQFEAEQVRSKYDVQPVHKAISAREGTSHSVILFNPLEQTREEVVMVVVNRPHVAVLDSN 688
Cdd:PLN02701  481 MSAAVEVLLGIRHEKSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRVVFFNPLEQTREEVVMVVVDRPAVCVFDSN 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  689 WTCVQSQISPELQHDRTKIFTGRHRVYWKASVPAMGLQTYYIVNGFAGCEKAKPAKIKYFSVSKSFSCPPPYACTRIEDD 768
Cdd:PLN02701  561 WTCVPSQISPEWQHDGEKLFTGRHRLYWKASVPALGLETYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGD 640
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  769 EAEIQNQHQSLTFDVKLGLLRKIS-HRNGYKNFVGEEIGMYSSPESGAYLFKPDGDARPIVQAGGNMVISEGPLLQEVYS 847
Cdd:PLN02701  641 TVEISNSHQTLGFDVKTGLLRKIKiHKNGSETVVGEEIGMYSSQGSGAYLFKPDGEAQPIVQAGGLVVVSEGPLVQEVHS 720
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  848 QPKTAWEQTPISHSTRIYEGDDAVQGLIVEKEYHVELIGQDFNDKELIVRYKTDIDNRRILYSDLNGFQMSRRETYDKIP 927
Cdd:PLN02701  721 VPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGHDFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRETYDKIP 800
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  928 LQGNYYPMPSLAFMQGSNGQRFSVHSRQSLGVASLKEGWLEIMLDRRLVRDDGRGLGQGVMDNRPINVIFHIIVESNISA 1007
Cdd:PLN02701  801 LQGNYYPMPSLAFLQGSNGQRFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNRPMNVVFHLLLESNISS 880
                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429 1008 tSNPVSNPLPLSPSLLSHCVGAHLNYPLHAFVAKNPQELSVQPPP-RSFSPLAAPLPCDLHMVNFKVPRPSKYSQQLIED 1086
Cdd:PLN02701  881 -SPPASNPLPLQPSLLSHRVGAHLNYPMHAFLAKKPQATSVENPQdTSFAPLAKPLPCDLHIVNFKVPRPSKYSQQEAED 959
                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429 1087 SRFVLILQRRHWDTSYYRKDRPQCTTLANGPLNLFNLFKGLAVLNAKATSLNLLHEDADMLGYSQQVGDVAQEGHVIISP 1166
Cdd:PLN02701  960 PRFGLLLQRRGWDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNLLHDDAEMLGYRKQAGSAAQEGIVLISP 1039
                        1050
                  ....*....|.
gi 223543429 1167 MEIQAYKLDLR 1177
Cdd:PLN02701 1040 MEIQAYKLDLR 1050
GH38N_AMII_GMII_SfManIII_like cd10809
N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 ...
167-519 0e+00

N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells.


Pssm-ID: 212120 [Multi-domain]  Cd Length: 340  Bit Score: 660.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  167 KLKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLE 246
Cdd:cd10809     1 KLKVFVVPHSHNDPGWIKTFEEYYQDQTKHILDNMVDKLSKNPKMKFIWAEISFLERWWDDASPDKKEAVKKLVKNGQLE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  247 IVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELAR 326
Cdd:cd10809    81 IVTGGWVMTDEANSHYFAMIDQLIEGHQWLKENLGVKPKSGWSIDPFGHSPTMPYLLKRAGFKNMVIQRIHYEVKKYLAQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  327 NKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARVHGFyYEMCPWGEHPVETSHENVQERAQKL 406
Cdd:cd10809   161 RKALEFMWRQYWDATGSTDILTHMMPFYSYDIPHTCGPDPAVCCQFDFKRLPGG-GESCPWKKPPQPITDDNVAERAELL 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  407 LDQYRKKSTLYRTNTLLVPLGDDFRYISVDEAEAQFRNYQKLFDYINSNPSLNAEAKFGTLEDYFQTLHEEADRINyslp 486
Cdd:cd10809   240 LDQYRKKSQLYRSNVVLIPLGDDFRYDSDEEWDAQYDNYQKLFDYINSNPELNVEIQFGTLSDYFNALRKRTGTNT---- 315
                         330       340       350
                  ....*....|....*....|....*....|...
gi 223543429  487 gevgsgqiVGFPSLSGDFFTYADRQQDYWSGYY 519
Cdd:cd10809   316 --------PGFPTLSGDFFTYADRDDDYWSGYY 340
GH38N_Man2A2 cd11667
N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside ...
168-519 1.67e-171

N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII (found in another subfamily), and as an isoenzyme of GMII. It is thought to also function in the N-glycosylation pathway. MX specifically hydrolyzes the same oligosaccharide substrate as does MII. It specifically removes two mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine).


Pssm-ID: 212132 [Multi-domain]  Cd Length: 344  Bit Score: 509.53  E-value: 1.67e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  168 LKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLEI 247
Cdd:cd11667     2 LQVFVVPHSHNDPGWIKTFDKYYYDQTQHILNSMVVKLQEDPRRRFIWSEISFFSKWWDNINAQKRAAVRRLVGNGQLEM 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  248 VGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELARN 327
Cdd:cd11667    82 ATGGWVMPDEANSHYFAMIDQLIEGHQWLEKNIGVTPRSGWAVDPFGHSSTMPYILRRSNLTSMLIQRVHYAIKKHFAAT 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  328 KNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARVHGFYYEmCPWGEHPVETSHENVQERAQKLL 407
Cdd:cd11667   162 QSLEFMWRQTWDPDSSTDIFCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRIN-CPWKVPPRAITEANVAERAQLLL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  408 DQYRKKSTLYRTNTLLVPLGDDFRYISVDEAEAQFRNYQKLFDYINSNPSLNAEAKFGTLEDYFQTLheeadrinYSLPG 487
Cdd:cd11667   241 DQYRKKSKLYRSKVLLVPLGDDFRYDKPQEWDAQFLNYQRLFDFLNSHPELHVQAQFGTLSDYFDAL--------YKRTG 312
                         330       340       350
                  ....*....|....*....|....*....|..
gi 223543429  488 EVGSGQIVGFPSLSGDFFTYADRQQDYWSGYY 519
Cdd:cd11667   313 VVPGMRPPGFPVVSGDFFSYADREDHYWTGYY 344
GH38N_Man2A1 cd11666
N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside ...
168-519 4.90e-167

N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal of both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212131 [Multi-domain]  Cd Length: 344  Bit Score: 497.95  E-value: 4.90e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  168 LKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLEI 247
Cdd:cd11666     2 LQVFVVPHSHNDPGWLKTFDDYFRDQTQHILNNMVLKLKEDSRRKFIWSEISYFAKWWDIIDGQKKDAVKRLIENGQLEI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  248 VGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELARN 327
Cdd:cd11666    82 VTGGWVMPDEATAHYFALIDQLIEGHQWLERNLGVKPKSGWAVDPFGHSPTMAYLLKRAGLSNMLIQRVHYSVKKHFSLQ 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  328 KNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARVHGFYYEmCPWGEHPVETSHENVQERAQKLL 407
Cdd:cd11666   162 KTLEFFWRQNWDLGSSTDILCHMMPFYSYDVPHTCGPDPKICCQFDFKRLPGGRIS-CPWRVPPEAIHPGNVQSRAQMLL 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  408 DQYRKKSTLYRTNTLLVPLGDDFRYISVDEAEAQFRNYQKLFDYINSNPSLNAEAKFGTLEDYFQTLHEEADRinyslpg 487
Cdd:cd11666   241 DQYRKKSKLFRTKVLLAPLGDDFRYTEYTEWDQQFENYQKLFDYMNSHPELHVKAQFGTLSDYFDALRKSTGM------- 313
                         330       340       350
                  ....*....|....*....|....*....|..
gi 223543429  488 EVGSGQIVgFPSLSGDFFTYADRQQDYWSGYY 519
Cdd:cd11666   314 DPVGGQSA-FPVLSGDFFTYADRDDHYWSGYF 344
GH38N_AMII_euk cd00451
N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase ...
168-454 4.51e-112

N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38); The family corresponds to a group of eukaryotic class II alpha-mannosidases (AlphaMII), which contain Golgi alpha-mannosidases II (GMII), the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), the noval core-specific lysosomal alpha 1,6-mannosidases (Epman, MAN2B2), and similar proteins. GMII catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. LAM is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. Different from LAM, Epman can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212095 [Multi-domain]  Cd Length: 258  Bit Score: 349.99  E-value: 4.51e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  168 LKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLEI 247
Cdd:cd00451     1 LNVHLIPHSHCDVGWLKTFDEYYNGDVKSILDSVVKALNNDPERKFIWAEIGFLERWWEDQGNDTKQQFKKLVKNGQLEF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  248 VGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELARN 327
Cdd:cd00451    81 VGGGWVMNDEACTTYESIIDQMTEGHQFLKDTFGVRPRVGWQIDPFGHSSTTPTLFSKMGFKGLVINRIPYSLKAEMKDN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  328 KNLEYIWRQSWDAEETTDIFVHMMP-FYSYDIPHTCGPEPaiccqfdfarvhgfyyemcpwgehpveTSHENVQERAQKL 406
Cdd:cd00451   161 KQLEFVWRGSPSLGPDSEIFTHVLDdHYSYPESLDFGGPP---------------------------ITDYNIAERADEF 213
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 223543429  407 LDQYRKKSTLYRTNTLLVPLGDDFRYisvDEAEAQFRNYQKLFDYINS 454
Cdd:cd00451   214 VEYIKKRSKTYRTNHILIPLGDDFRF---KNASLQFSNMDKLIAYINS 258
Glyco_hydro_38N pfam01074
Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of ...
169-508 4.53e-99

Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 426030 [Multi-domain]  Cd Length: 271  Bit Score: 315.34  E-value: 4.53e-99
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   169 KVFVVPHSHNDPGWKLTVDEYyERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKREsFTKLVKNGQLEIV 248
Cdd:pfam01074    1 TVHLVGHSHIDVGWLWTVDET-RRKVQRTFSSVLALLDRDPDRRFIWSEAQFFAWWWEDQPELFKR-IKKLVAEGRLEPV 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   249 GGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKElaRNK 328
Cdd:pfam01074   79 GGGWVEPDENLPSGESLIRQFLYGQRFFKEEFGVRPRVGWLPDPFGYSATLPQILKQAGIDYFLTQRLHWNDKNK--FNP 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   329 NLEYIWRQSWDaeetTDIFVHMMPFYSYdiphtcgpePAICCQFdfarvhgfyyemcpwgehpvetshenvQERAQKLLD 408
Cdd:pfam01074  157 HLEFIWRGSDG----TEIFTHMPPFDYY---------PTYGFQF---------------------------QERAEDLLA 196
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   409 QYRKKSTLYRTNTLLVPLGDDfryisvdeaEAQFRNYQKLFDYIN--SNPSLNAEAKFGTLEDYFQTLHEEadrinyslp 486
Cdd:pfam01074  197 YARNYADKTRTNHVLLPFGDG---------DGGGGPTDEMLEYINrwNALPGLPKVQYGTPSDYFDALEKA--------- 258
                          330       340
                   ....*....|....*....|..
gi 223543429   487 gevgsgqivGFPSLSGDFFTYA 508
Cdd:pfam01074  259 ---------TWPTKTDDFPPYA 271
GH38N_AMII_LAM_like cd10810
N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside ...
168-454 1.47e-83

N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base.


Pssm-ID: 212121 [Multi-domain]  Cd Length: 278  Bit Score: 273.32  E-value: 1.47e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  168 LKVFVVPHSHNDPGWKLTVDEYYERQS--------RHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKRESFTKL 239
Cdd:cd10810     1 LNVHLVPHTHDDVGWLKTVDQYYYGSNnsiqhagvQYILDSVIEELLKNPDRKFIYVEIAFFSRWWREQSEDTRQKVKKL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  240 VKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGF--VPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTH 317
Cdd:cd10810    81 VKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTFGEcaRPRVGWQIDPFGHSRTQASLFAQMGFDGLFFGRID 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  318 YEVKKELARNKNLEYIWRQSWDAEETTDIFVHMMPFYsYDIPH------TCGPEPAIccqfDFARVHGFyyemcpwgehp 391
Cdd:cd10810   161 YQDKAQRLKNKEMEFIWRGSPSLGPDADIFTGVLYNH-YGPPPgfcfdiLCGDEPIQ----DDPNLEDY----------- 224
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 223543429  392 vetsheNVQERAQKLLDQYRKKSTLYRTNTLLVPLGDDFRYISvdeAEAQFRNYQKLFDYINS 454
Cdd:cd10810   225 ------NVDERVDDFVQYAKEQAQHYRTNHIMLTMGSDFQYQN---AEMWFKNMDKLIKYVNK 278
GH38N_AMII_like cd10786
N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside ...
169-454 5.34e-65

N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38); Alpha-mannosidases (EC 3.2.1.24) are extensively found in eukaryotes and play important roles in the processing of newly formed N-glycans and in degradation of mature glycoproteins. A deficiency of this enzyme causes the lysosomal storage disease alpha-mannosidosis. Many bacterial and archaeal species also possess putative alpha-mannosidases, but their activity and specificity is largely unknown. Based on different functional characteristics and sequence homology, alpha-mannosidases have been organized into two classes (class I, belonging to glycoside hydrolase family 47, and class II, belonging to glycoside hydrolase family 38). Members of this family corresponds to class II alpha-mannosidases (alphaMII), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212098 [Multi-domain]  Cd Length: 251  Bit Score: 220.35  E-value: 5.34e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  169 KVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEeKRESFTKLVKNGQLEIV 248
Cdd:cd10786     1 TVHLVPHSHYDVGWLQTFEQYYQINFKAILDKALRLLDANPEYKFLIEEVILLERYWDVRPD-LKAKLKQAVRSGRLEIA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  249 GGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKelaRNK 328
Cdd:cd10786    80 GGGYVMPDTNLPDGESLVRQILLGKRWLKEFLGARPPVMWQADVFGHSPQLPQILAKSGFTGFAFGRGPYSQKR---MQR 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  329 NLEYIWRQSWDaeetTDIFVHMMPFYSYDIPHTCGPEPaiccqfdfarvhgfyyemcpwgehPVETSHENVQERAQKLLD 408
Cdd:cd10786   157 PSEFLWRGLDG----TRILTHWMPNGYSDGPFLCGPDI------------------------PGDNSGPNALASLEALVE 208
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 223543429  409 QYRKKSTLYRTNTLLVPLGDDFRYisvDEAEAQFRNYQKLFDYINS 454
Cdd:cd10786   209 QWKKLAELGATNHLLMPSGGDFTI---PQADPLQVNQARLVEPWNS 251
GH38N_AMII_Epman_like cd10811
N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and ...
168-475 2.59e-57

N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by a novel human core-specific lysosomal alpha 1,6-mannosidase (Epman, Man2B2) and similar proteins. Although it was previously named as epididymal alpha-mannosidase, Epman has a broadly distributed transcript expression profile. Different from the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), Epman is not associated with genetic alpha-mannosidosis that is caused by the absence of LAM. Furthermore, Epman has unique substrate specificity. It can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. In contrast, the major LAM can cleave all of the alpha-linked mannose residues from high mannose oligosaccharides except the core alpha 1,6-linked mannose residue. Moreover, it is suggested that the catalytic activity of Epman is dependent on prior action by di-N-acetyl-chitobiase (chitobiase), which indicates there is a functional cooperation between these two enzymes for the full and efficient catabolism of mammalian lysosomal N-glycan core structures. Epman has an acidic pH optimum. It is strongly stimulated by cobalt or zinc ions and strongly inhibited by furanose analogues swainsonine (SW) and 1,4-dideoxy-1,4-imino-d-mannitol (DIM).


Pssm-ID: 212122 [Multi-domain]  Cd Length: 326  Bit Score: 201.27  E-value: 2.59e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  168 LKVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRD-ATEEKRESFTKLVKNGQLE 246
Cdd:cd10811     1 IQAFVIPHSHMDVGWVYTVQESMHAYAANVYTSVVEELMRGKQRRFIAVEQEFFRLWWDGvATDKQKQQVRQLLSEGRLE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  247 IVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELAR 326
Cdd:cd10811    81 FVIGGQVMHDEAVTELDDQILQLTEGHGFLYETFGVRPRFSWHVDPFGASATTPTLFALAGFNAHLISRIDYDLKAAMQK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  327 NKNLEYIWRQSWDAEETTDIFVHMMPFYSYdiphtCGPEpaiccQFDFARVHGFYYE------------MCPWGEHPVET 394
Cdd:cd10811   161 AKGLQFVWRGSPSLSESQEIFTHVMDQYSY-----CTPS-----YIPFSNRSGFYWNgvavfpdppkdgIYPNMSLPVTT 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  395 shENVQERAQKLLDQYRKKSTLYRTNTLLVPLGDDFRYISvdeAEAQFRNYQKLFDYINSNPS-LNAEAKFGTLEDYFQT 473
Cdd:cd10811   231 --QNIHQYAETMVANIKQRAAWFRTPHVLWPWGCDKQFFN---ASVQFSNMDPLLDYINQHSSeFGVTVQYATLGDYFQA 305

                  ..
gi 223543429  474 LH 475
Cdd:cd10811   306 LH 307
GH38-57_N_LamB_YdjC_SF cd10785
Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein ...
171-349 5.03e-33

Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins; The superfamily possesses strong sequence similarities across a wide range of all three kingdoms of life. It mainly includes four families, glycoside hydrolases family 38 (GH38), heat stable retaining glycoside hydrolases family 57 (GH57), lactam utilization protein LamB/YcsF family, and YdjC-family. The GH38 family corresponds to class II alpha-mannosidases (alphaMII, EC 3.2.1.24), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides by employing a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. GH57 is a purely prokaryotic family with the majority of thermostable enzymes from extremophiles (many of them are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57 cleaves alpha-glycosidic bond by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation. Although the exact molecular function of LamB/YcsF family and YdjC-family remains unclear, they show high sequence and structure homology to the members of GH38 and GH57. Their catalytic domains adopt a similar parallel 7-stranded beta/alpha barrel, which is remotely related to catalytic NodB homology domain of the carbohydrate esterase 4 superfamily.


Pssm-ID: 212097 [Multi-domain]  Cd Length: 203  Bit Score: 126.99  E-value: 5.03e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  171 FVVPHSHNDPGWKLTVDEYYERQSRHILDTIVSTLSKDVRRKFIWEEMSYLERWWRDATEEKRESFTKLVKNGQLEIVGG 250
Cdd:cd10785     1 FINAHSHNPYVWIQTFEEWYFEATKATYIPLLMHFHRNFEMSFNIAPISYEALFYHDLGENIKLQMKSIQKNGQLEIGTH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  251 GWVMND--EANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSA-----TMAYLLRRMGFENMLIQRTHYEVKKE 323
Cdd:cd10785    81 GATHPDesEAQSHPENVYAQITEGITWLEKHMGVTPRHIWLHECFYNQAkqlsqGIPYILQKSGFLYLFVQSRSISVKKE 160
                         170       180
                  ....*....|....*....|....*.
gi 223543429  324 LARnknleyiWRQSWDAEETTDIFVH 349
Cdd:cd10785   161 LAL-------WRQIWYNKKDSGVFTF 179
Glyco_hydro_38C pfam07748
Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of ...
772-981 6.76e-33

Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 400208 [Multi-domain]  Cd Length: 204  Bit Score: 126.60  E-value: 6.76e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   772 IQNQHQSLTFDVKLGLLRKISHRNG---YKNFVGEEIGMYSSP--ESGAYLFKPDGDARPIVQAGGNM-VISEGPLLQEV 845
Cdd:pfam07748    1 LENGFLKVEFDNDTGTLTSIYDKELsreVLAEVGNQFGLYEDIpgYSDAWDFRPFYEAKPLEVDEQSIeVVEDGPLVAEV 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   846 YSQPKTawEQTPISHSTRIYEGDDAVqglivEKEYHVeligqDFNDKELIVRYKTDIDNRRILYSDLNGFQMSRRETYDK 925
Cdd:pfam07748   81 HVKFKI--GGSEISQVIRLYKGSPRL-----EFETTV-----DWHEREVLLKVAFPIDSQAEFATDENGFGVIKRPTHQN 148
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 223543429   926 IPLQGNYY--PMPSLAFMQGSNgQRFSVHSRQSLGVASLkEGWLEIMLDRRLVRDDGR 981
Cdd:pfam07748  149 TSWDLARFevPIHSWVDLSDSN-YGVSLLNDSKYGGSSL-DGQLELSLLRRPLYPDPR 204
Alpha-mann_mid pfam09261
Alpha mannosidase middle domain; Members of this family adopt a structure consisting of three ...
514-616 3.01e-25

Alpha mannosidase middle domain; Members of this family adopt a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. They are predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 462728 [Multi-domain]  Cd Length: 98  Bit Score: 100.80  E-value: 3.01e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   514 YWSGYYVSRPFFKAVDRVLEQTLRATEMMMSLLLGYcqraqcEKLATGFGYKLTAARRNLALFQHHDGVTGTAKDHVVRD 593
Cdd:pfam09261    2 YHRGTYTSRADLKRLNRKLEHLLRAAEQLSSLAALS------LLGYEYPKEELEELWKALLLNQFHDILPGSSIQEVYRD 75
                           90       100
                   ....*....|....*....|...
gi 223543429   594 YGLRMHTSLQDLQIFMSKAVEVL 616
Cdd:pfam09261   76 AEARLAEALKETEKLLEDALRLL 98
Alpha-mann_mid smart00872
Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase ...
514-598 5.57e-25

Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 214875 [Multi-domain]  Cd Length: 79  Bit Score: 99.55  E-value: 5.57e-25
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429    514 YWSGYYVSRPFFKAVDRVLEQTLRATEMMMSLLLgycqraqceKLATGFGY---KLTAARRNLALFQHHDGVTGTAKDHV 590
Cdd:smart00872    1 YHRGTYTSRPYLKRLNRRAESLLRAAEELAALAA---------LLSLGYKYpseQLEELWKALLLNQHHDAITGTSIDEV 71

                    ....*...
gi 223543429    591 VRDYGLRM 598
Cdd:smart00872   72 YDDYEKRL 79
MngB COG0383
Alpha-mannosidase [Carbohydrate transport and metabolism];
167-733 3.84e-17

Alpha-mannosidase [Carbohydrate transport and metabolism];


Pssm-ID: 440152 [Multi-domain]  Cd Length: 798  Bit Score: 86.82  E-value: 3.84e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  167 KLKVFVVPHSHNDPGWKLTVDEYYERQSRHIlDTIVSTLSKDvrrkfiwEE------MSYLERWWRDATEEKRESFTKLV 240
Cdd:COG0383     5 KKKVHAVGHAHIDRAWLWPVEETRRKLARTF-STVLDLLEEY-------PEfvfdgsTAQLYDYLKEHYPELFERIKKLV 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  241 KNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYev 320
Cdd:COG0383    77 KEGRWEPVGGMWVEPDTNLPSGESLVRQLLYGQRFFKEEFGVDMKVGWLPDSFGYSAQLPQILKGAGIDYFVTQKGSW-- 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  321 kKELARNKNLEYIWRqswdAEETTDIFVHMMPF-YSYDIphtcgpepaiccqfdfarvhgfyyemcpwgeHPVEtshenv 399
Cdd:COG0383   155 -NDTNRFPYHTFWWE----GIDGSEVLTHFFPNgYNSGL-------------------------------DPEE------ 192
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  400 qerAQKLLDQYRKKStlyRTNTLLVP--LGDDFRYISVD--EAEAQFRNYQKLfdyinsnpslnAEAKFGTLEDYFQTLH 475
Cdd:COG0383   193 ---LAGAWRNFEQKA---VTDELLLPfgYGDGGGGPTREmlERARRLNDLPGL-----------PEVVISTPEDFFEALE 255
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  476 EEADRinyslpgevgsgqivgFPSLSGDFFTYADRqqdywsGYYVSRPFFKAVDRVLEQTLRATEMMMSLLlgycqraqc 555
Cdd:COG0383   256 EELPD----------------LPVWQGELYLELHR------GTYTSRADLKRLNRRAERLLREAEPLAALA--------- 304
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  556 ekLATGFGY---KLTAARRNLaLFQH-HDGVTGTAKDHVVRDyglrmhtSLQDLQifmsKAVEVLLGIRHEksdhnpsqf 631
Cdd:COG0383   305 --ALLGAEYpqeELDEAWKLL-LLNQfHDILPGSSIDEVYRE-------AEARYE----EALEEAESLIDE--------- 361
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  632 eaeqvrskydvqpVHKAISAR---EGTSHSVILFNPLEQTREEVVMVVV--NRPHVAVLDSNWTCVQSQISpelqHDRTK 706
Cdd:COG0383   362 -------------ALRAIAGAidlPEDGDPLVVFNTLPWPRSEVVELPLytPGKNFQLVDSDGKELPAQIL----EDGKI 424
                         570       580
                  ....*....|....*....|....*..
gi 223543429  707 IFtgrhrvyWKASVPAMGLQTYYIVNG 733
Cdd:COG0383   425 LF-------SAEDLPALGYKTLSLVEG 444
GH38N_AMII_ER_cytosolic cd10789
N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; ...
169-361 5.03e-10

N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38); The subfamily is represented by Saccharomyces cerevisiae vacuolar alpha-mannosidase Ams1, rat ER/cytosolic alpha-mannosidase Man2C1, and similar proteins. Members in this family share high sequence similarity. None of them have any classical signal sequence or membrane spanning domains, which are typical of sorting or targeting signals. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 utilizes both the cytoplasm to vacuole targeting (Cvt, nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Man2C1is involved in oligosaccharide catabolism in both the ER and cytosol. It can catalyze the cobalt-dependent cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked mannose residues. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl-enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212101 [Multi-domain]  Cd Length: 252  Bit Score: 61.37  E-value: 5.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  169 KVFVVPHSHNDPGWKLTVDEyyerqsrhILDTIVSTLSKDVRR-------KFIWEEMSYLErwWrdaTEEKR----ESFT 237
Cdd:cd10789     1 KIYAVGHAHIDLAWLWPVRE--------TRRKAARTFSTVLDLmeeypdfVFTQSQAQLYE--W---LEEDYpelfERIK 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  238 KLVKNGQLEIVGGGWVMND------EAnshyfaIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENM 311
Cdd:cd10789    68 ERVKEGRWEPVGGMWVEPDcnlpsgES------LVRQFLYGQRYFREEFGVESRILWLPDSFGFSAALPQILKKSGIDYF 141
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 223543429  312 LIQRTHYEVKKELARNKnleYIWRqSWDAeetTDIFVHMMPFYSYDIPHT 361
Cdd:cd10789   142 VTQKLSWNDTNKFPYDT---FRWR-GIDG---SEVLAHFIPTGYYNGDLT 184
GH38N_AMII_SpGH38_like cd10814
N-terminal catalytic domain of SPGH38, a putative alpha-mannosidase of Streptococcus pyogenes, ...
169-478 2.65e-09

N-terminal catalytic domain of SPGH38, a putative alpha-mannosidase of Streptococcus pyogenes, and its prokaryotic homologs; glycoside hydrolase family 38 (GH38); The subfamily is represented by SpGH38 of Streptococcus pyogenes, which has been assigned as a putative alpha-mannosidase, and is encoded by ORF spy1604. SpGH38 appears to exist as an elongated dimer and display alpha-1,3 mannosidase activity. It is active on disaccharides and some aryl glycosides. SpGH38 can also effectively deglycosylate human N-glycans in vitro. A divalent metal ion, such as a zinc ion, is required for its activity. SpGH38 is inhibited by swainsonine. The absence of any secretion signal peptide suggests that SpGH38 may be intracellular.


Pssm-ID: 212125 [Multi-domain]  Cd Length: 271  Bit Score: 59.58  E-value: 2.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  169 KVFVVPHSHNDPGWKLTVDEYYERQsRHILDTIVSTLSKDVR-RKF-------IWEEmsYLErwwrdATEEKRESFTKLV 240
Cdd:cd10814     1 KVHIISHTHWDREWYLPFEEFRMRL-IDLIDRLLELLEEDPEfKSFhldgqtiVLED--YLE-----VRPEKRERLKKLI 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  241 KNGQLEIvgGGW-VMND------EANSHYFAIIEQITE--GNMWLndtIGFVPknswaiDPFGYSATMAYLLRRMGFENM 311
Cdd:cd10814    73 REGKLVI--GPWyVLQDefltsgEANIRNLLIGKKVAEefGKSMK---IGYFP------DTFGHIGQMPQILKGFGIDNA 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  312 LIQRThyeVKKELARNKNLEyiwrqsWDAEETTDIFVHMMPfysydiphtCGpepaiccqfdfarvhgfYYEMcpwGEHP 391
Cdd:cd10814   142 VFGRG---VKPTESQYSEFW------WESPDGSRVLGILLA---------NW-----------------YSNG---NEIP 183
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  392 VEtshenvQERAQKLLDQYRKKSTLYR-TNTLLVPLGDDFRYISVDEAEAqFRNYQKLFDyinsnpslNAEAKFGTLEDY 470
Cdd:cd10814   184 VD------EEEAKEFWDKKLADAERYAsTDHLLLMNGCDHQPVQPDLTKA-IREANELYP--------DYEFIHSNFDEY 248

                  ....*...
gi 223543429  471 FQTLHEEA 478
Cdd:cd10814   249 LEALKSEL 256
GH38N_AMII_like_1 cd10791
N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to ...
169-261 1.85e-06

N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38); The subfamily of mainly uncharacterized eukaryotic proteins shows sequence homology with class II alpha-mannosidases (AlphaAMIIs). AlphaAMIIs possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyze the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. This subfamily belongs to the GH38 family of retaining glycosyl hydrolases, which employ a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212103 [Multi-domain]  Cd Length: 254  Bit Score: 50.78  E-value: 1.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  169 KVFVVPHSHNDPGWKLTVDEYYERQSRHILDTIvsTLSKDVRR-----KFIWE-EMSYL-ERWWRDATEEKRESFTKLVK 241
Cdd:cd10791     1 TVHVVHHSHTDIGYTDLQEKVDRYHVDYIPQAL--DLAEATKNypedaRFRWTtESTWLvEEYLKCASPEQRERLEQAVR 78
                          90       100
                  ....*....|....*....|
gi 223543429  242 NGQLEIVGGGWVMNDEANSH 261
Cdd:cd10791    79 RGRIGWHALPLNITTELMDE 98
GH38N_AMII_ScAms1_like cd10812
N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; ...
170-357 2.01e-06

N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38); The family is represented by Saccharomyces cerevisiae alpha-mannosidase (Ams1) and its eukaryotic homologs. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 forms an oligomer in the cytoplasm and retains its oligomeric form during the import process. It utilizes both the Cvt (nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Mutants in either pathway are defective in Ams1 import. Members in this family show high sequence similarity with rat ER/cytosolic alpha-mannosidase Man2C1.


Pssm-ID: 212123 [Multi-domain]  Cd Length: 258  Bit Score: 50.51  E-value: 2.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  170 VFVVPHSHNDPGWKLTVDEYYERQSRHiLDTIVSTLSKDVRRKFIW---EEMSYLERWWRDATEEKRESftklVKNGQLE 246
Cdd:cd10812     2 VYGIGNCHIDTAWLWPFSETQQKVARS-WSTQCDLMDRYPEYRFVAsqaQQFKWLETLYPDLFEKVKEY----VKQGRFH 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  247 IVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYEVKKELAR 326
Cdd:cd10812    77 PIGGSWVENDTNMPSGESLARQFLYGQRYFESRFGKRCDTFWLPDTFGYSSQIPQLCRLAGMDYFFTQKLSWNNINSFPH 156
                         170       180       190
                  ....*....|....*....|....*....|.
gi 223543429  327 NKNleyiwrqSWDAEETTDIFVHMMPFYSYD 357
Cdd:cd10812   157 STF-------NWVGIDGTQVLVHMTPVNTYT 180
GH38N_AMII_Man2C1 cd10813
N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar ...
170-315 6.84e-04

N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily corresponds to cytosolic alpha-mannosidase Man2C1 (also known as ER-mannosidase II or neutral/cytosolic mannosidase), mainly found in various vertebrates, and similar proteins. Man2C1 plays an essential role in the catabolism of cytosolic free oligomannosides derived from dolichol intermediates and the degradation of newly synthesized glycoproteins in ER or cytosol. It can catalyze the cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked mannose residues. Man2C1 is a cobalt-dependent enzyme belonging to alpha-mannosidase class II. It has a neutral pH optimum and is strongly inhitibed by furanose analogs swainsonine (SW) and 1,4-dideoxy-1,4-imino-D-mannitol (DIM), moderately by deoxymannojirimycin (DMM), but not by kifunensine (KIF). DMM and KIF, both pyranose analogs, are normally known to inhibit class I alpha-mannosidase.


Pssm-ID: 212124 [Multi-domain]  Cd Length: 252  Bit Score: 42.76  E-value: 6.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429  170 VFVVPHSHNDPGWKLTVDEYYERQSRHILdTIVSTLSKDVRRKFIW---EEMSYLERWWRDATEEKREsftkLVKNGQLE 246
Cdd:cd10813     2 IHAMGHCHIDSAWLWPYEETIRKCARSWV-TVLRLMEDYPDFTFACsqaQQLEWVKSWYPGLYEEIQE----RVKNGRFI 76
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 223543429  247 IVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGFVPKNSWAIDPFGYSATMAYLLRRMGFENMLIQR 315
Cdd:cd10813    77 PVGGTWVEMDGNLPSGESMVRQFLYGQRFFKEEFGITCKEFWLPDTFGYSAQLPQIMKGCGISRFLTQK 145
Glyco_hydro_57 pfam03065
Glycosyl hydrolase family 57; This family includes alpha-amylase (EC:3.2.1.1), ...
220-312 4.64e-03

Glycosyl hydrolase family 57; This family includes alpha-amylase (EC:3.2.1.1), 4--glucanotransferase (EC:2.4.1.-) and amylopullulanase enzymes.


Pssm-ID: 397267 [Multi-domain]  Cd Length: 293  Bit Score: 40.43  E-value: 4.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223543429   220 YLERWWRDATEEKRESFTKLVKNGQLEIVGGG------WVMNDEAnshyfAIIEQITEGNMWLNDTIGFVPKNSWAIDpF 293
Cdd:pfam03065   78 PLLEQAQKWNPEVLELFRELAESGQVELLTSPyyhpllPLLPDSE-----DFIAQVKMARELYREYFGVEPRGFWLPE-L 151
                           90
                   ....*....|....*....
gi 223543429   294 GYSATMAYLLRRMGFENML 312
Cdd:pfam03065  152 AYSPDILKILAELGFEYVF 170
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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