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Conserved domains on  [gi|223532730|gb|EEF34510|]
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conserved hypothetical protein [Ricinus communis]

Protein Classification

YOS1 family protein( domain architecture ID 10554140)

YOS1 family protein similar to Saccharomyces cerevisiae transport protein YOS1, a component of the YIP1-YIF1 complex, that is required for protein transport between endoplasmic reticulum and Golgi apparatus

Gene Ontology:  GO:0000139|GO:0015031
PubMed:  15659647

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Yos1 pfam08571
Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for ...
 3-59 8.50e-17

Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes.


:

Pssm-ID: 462523  Cd Length: 81  Bit Score: 67.56  E-value: 8.50e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 223532730   3 LWTILEGLVIFANALAILNEDRFLAPRGWTLAELQAG-----RRNSIKGQIIGLIHACQ-FMR 59
Cdd:pfam08571  1 LGSLLYAILLLLNAIAILSEDRFLARIGWSSSQQDPGfgaggDDPSVKAQIINLIRAVRtLMR 63
 
Name Accession Description Interval E-value
Yos1 pfam08571
Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for ...
 3-59 8.50e-17

Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes.


Pssm-ID: 462523  Cd Length: 81  Bit Score: 67.56  E-value: 8.50e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 223532730   3 LWTILEGLVIFANALAILNEDRFLAPRGWTLAELQAG-----RRNSIKGQIIGLIHACQ-FMR 59
Cdd:pfam08571  1 LGSLLYAILLLLNAIAILSEDRFLARIGWSSSQQDPGfgaggDDPSVKAQIINLIRAVRtLMR 63
 
Name Accession Description Interval E-value
Yos1 pfam08571
Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for ...
 3-59 8.50e-17

Yos1-like; In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes.


Pssm-ID: 462523  Cd Length: 81  Bit Score: 67.56  E-value: 8.50e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 223532730   3 LWTILEGLVIFANALAILNEDRFLAPRGWTLAELQAG-----RRNSIKGQIIGLIHACQ-FMR 59
Cdd:pfam08571  1 LGSLLYAILLLLNAIAILSEDRFLARIGWSSSQQDPGfgaggDDPSVKAQIINLIRAVRtLMR 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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