|
Name |
Accession |
Description |
Interval |
E-value |
| TMTC_DUF1736 |
pfam08409 |
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ... |
130-204 |
9.59e-38 |
|
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.
Pssm-ID: 462468 Cd Length: 75 Bit Score: 134.96 E-value: 9.59e-38
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 149067050 130 GNKPPSFSNSDNPAADSDSLLARTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYSGLL 204
Cdd:pfam08409 1 GGQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
394-690 |
1.62e-27 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 112.52 E-value: 1.62e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 394 EAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 473
Cdd:COG2956 26 KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 474 PDENLkdphahkssvtSCLYNLGKLYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 553
Cdd:COG2956 106 DPDDA-----------EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH---AYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 554 RSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfn 633
Cdd:COG2956 172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP----------------------- 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 149067050 634 aahmlrqaslnEAAEKYYDLAARLRPNyPAALMNLGAILHLNGRLQKAEANYLRALQ 690
Cdd:COG2956 229 -----------EEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
371-590 |
3.18e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 3.18e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 371 IKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYL 448
Cdd:COG0457 1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 449 NTGIILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQfapQSL 528
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALEL---DPDDAEAL--------YNLGLALLELGRYDEAIEAYERALELDPDD---ADA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 149067050 529 YNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELD 590
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
443-695 |
1.61e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 109.82 E-value: 1.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 443 LASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKdphAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQ 522
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AH--------LALGNLYRRRGEYDRAIRIHQKLLERDPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 523 FApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQ 602
Cdd:COG2956 76 AE---ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 603 FLLEESRLTEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAE 682
Cdd:COG2956 153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEAL 232
|
250
....*....|...
gi 149067050 683 ANYLRALQLKPDD 695
Cdd:COG2956 233 ELLRKALELDPSD 245
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
337-591 |
9.65e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.51 E-value: 9.65e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 337 LVFYATATLIVFYGLKtAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLY 414
Cdd:COG2956 2 LLPVAAALGWYFKGLN-YLLNGQPDKAIDLLEEALELDPetVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 415 NLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAHkssvtsclYN 494
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---AHAY--------CE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 495 LGKLYHEQGRYEEALSVYREAIQKMPRQFAPqslYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTG 574
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARA---LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250
....*....|....*..
gi 149067050 575 RKSEAEKFFLKAIELDP 591
Cdd:COG2956 227 DPEEALELLRKALELDP 243
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
441-692 |
1.67e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 105.86 E-value: 1.67e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 441 PTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGRYEEALSVYREAIQKMP 520
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEA-----LYNLGLAYLRLGRYEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 521 RQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHY 600
Cdd:COG0457 74 DDAE---ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 601 GQFLLEESRLTEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQK 680
Cdd:COG0457 151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
250
....*....|..
gi 149067050 681 AEANYLRALQLK 692
Cdd:COG0457 231 LALRLAALALYQ 242
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
356-590 |
2.01e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 106.35 E-value: 2.01e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 356 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 433
Cdd:COG2956 54 RRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 434 KLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAHKSsvtscLYNLGKLYHEQGRYEEALSVYR 513
Cdd:COG2956 134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL------DPDCARA-----LLLLAELYLEQGDYEEAIAALE 202
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149067050 514 EAIQKMPRQFapqSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDhIPAHLTYGKLLALTGRKSEAEKFFLKAIELD 590
Cdd:COG2956 203 RALEQDPDYL---PALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
491-695 |
1.11e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.55 E-value: 1.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 491 CLYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNMmGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLL 570
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDD--AEALYNL-GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 571 ALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKY 650
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY----------------------------------DEAIEA 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 149067050 651 YDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
356-517 |
1.49e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.47 E-value: 1.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 356 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 433
Cdd:COG0457 20 RLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDY 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 434 KLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYR 513
Cdd:COG0457 100 DKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL---DPDDADAL--------YNLGIALEKLGRYEEALELLE 168
|
....
gi 149067050 514 EAIQ 517
Cdd:COG0457 169 KLEA 172
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
394-678 |
4.92e-23 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 104.30 E-value: 4.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 394 EAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 473
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 474 pdenlkDPHAHKSsvtscLYNLGKLYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESL 553
Cdd:COG3914 108 ------NPDNAEA-----LFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRAL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 554 RSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTEFDVVFN 633
Cdd:COG3914 174 ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPF 253
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 149067050 634 AAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRL 678
Cdd:COG3914 254 ALLYLPDDDPAELLALARAWAQLVAAAAAPELPPPPNPRDPDRKL 298
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
382-529 |
1.82e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 99.30 E-value: 1.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 382 LGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTE 461
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 149067050 462 EARRTFLKCSEI-PDenlkDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLY 529
Cdd:COG3914 164 EAIAALRRALELdPD----NAEAL--------NNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
356-479 |
3.18e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 98.53 E-value: 3.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 356 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYY 433
Cdd:COG3914 90 ALGRYEEALALYRRALALNPdnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAAL 169
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 149067050 434 KLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLK 479
Cdd:COG3914 170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
355-554 |
2.90e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 91.33 E-value: 2.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 355 IRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHY 432
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPddAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 433 YKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAhkssvTSCLYNLGKLYHEQGRYEEALSVY 512
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ------DPDY-----LPALPRLAELYEKLGDPEEALELL 235
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 149067050 513 REAIQKMPRqfapQSLYNMMGEAYMRLSKLPEAEHWYMESLR 554
Cdd:COG2956 236 RKALELDPS----DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
492-702 |
9.10e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.90 E-value: 9.10e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 492 LYNLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLYNMM------GEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLT 565
Cdd:COG3914 38 AAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaALLLQALGRYEEALALYRRALALNPDNAEALFN 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 566 YGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfnaahmlrqaslnE 645
Cdd:COG3914 118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL----------------------------------E 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 149067050 646 AAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG3914 164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
444-591 |
1.39e-19 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 85.63 E-value: 1.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 444 ASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAhkssvtscLYNLGKLYHEQGRYEEALSVYREAIQKMPRQF 523
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDN---PEA--------FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 149067050 524 ApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDP 591
Cdd:COG4783 73 E---ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
415-684 |
3.06e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 92.36 E-value: 3.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 415 NLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLkcSEIPDENLKDPHAHKSSVTSCLYN 494
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAAL--LALAAGEAAAAAAALLLLAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 495 LGKLYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTG 574
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAE---ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 575 RKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLA 654
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
|
250 260 270
....*....|....*....|....*....|...
gi 149067050 655 ARLRpNYPAALMNLgAILHLNG---RLQKAEAN 684
Cdd:COG3914 241 AALA-RGPSELSPF-ALLYLPDddpAELLALAR 271
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
407-559 |
1.83e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 79.47 E-value: 1.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 407 SNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI-PDEnlkdPHAHk 485
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELdPDE----PEAR- 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149067050 486 ssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLRSKTDH 559
Cdd:COG4783 76 -------LNLGLALLKAGDYDEALALLEKALKLDPEH--PEAYLR-LARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
524-695 |
5.35e-17 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 78.31 E-value: 5.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 524 APQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTkgncymhygqf 603
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 604 lleesrlteaaemakkaaeldstEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEA 683
Cdd:COG4783 71 -----------------------EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
170
....*....|..
gi 149067050 684 NYLRALQLKPDD 695
Cdd:COG4783 128 ALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
553-702 |
3.65e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.90 E-value: 3.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 553 LRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTEFDVVF 632
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 633 NAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
492-610 |
7.30e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.84 E-value: 7.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 492 LYNLGKLYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 571
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPE---AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110
....*....|....*....|....*....|....*....
gi 149067050 572 LTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRL 610
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
376-522 |
1.57e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.07 E-value: 1.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 376 AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILM 455
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149067050 456 NQGKTEEARRTFLKCSEIpdeNLKDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQ 522
Cdd:COG4783 84 KAGDYDEALALLEKALKL---DPEHPEAY--------LRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
394-535 |
2.02e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 70.42 E-value: 2.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 394 EAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 473
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 149067050 474 pdenlkDPHAHKSsvtscLYNLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLYNMMGEA 535
Cdd:COG4235 81 ------DPDNPEA-----LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
375-704 |
5.24e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.89 E-value: 5.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 375 PAKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIIL 454
Cdd:TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 455 MNQGKTEEARRTFlkcSEIPDENLKDPHAHKSsvtsclynLGKLYHEQGRYEEALSVYREAIQKmprqfAPQSLYNM-MG 533
Cdd:TIGR02917 680 LAAKRTESAKKIA---KSLQKQHPKAALGFEL--------EGDLYLRQKDYPAAIQAYRKALKR-----APSSQNAIkLH 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 534 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPtkgncymhygqflleesrltea 613
Cdd:TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP---------------------- 801
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 614 aemakkaaeldstEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKP 693
Cdd:TIGR02917 802 -------------DNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868
|
330
....*....|.
gi 149067050 694 DDVITQSNLRK 704
Cdd:TIGR02917 869 EAAAIRYHLAL 879
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
498-591 |
9.88e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 69.22 E-value: 9.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 498 LYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKS 577
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPE---LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
90
....*....|....
gi 149067050 578 EAEKFFLKAIELDP 591
Cdd:COG5010 140 EAKAALQRALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
353-465 |
2.06e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 2.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 353 TAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 430
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPdfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
|
90 100 110
....*....|....*....|....*....|....*
gi 149067050 431 HYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARR 465
Cdd:COG3914 201 AAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
416-707 |
3.07e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.58 E-value: 3.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 416 LGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENlkdPHAHKSSVTSclynl 495
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL---GRADLLLILS----- 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 496 gklYHEQGRYEEALSVYREAIQKMPRQfapQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTD----------------- 558
Cdd:TIGR02917 441 ---YLRSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDffpaaanlaridiqegn 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 559 -----------------HIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAA 621
Cdd:TIGR02917 515 pddaiqrfekvltidpkNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 622 EL--DSTEFDVVFNAAHmLRQASLNEAAEKYYDLAARLrPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQ 699
Cdd:TIGR02917 595 DAapDSPEAWLMLGRAQ-LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672
|
....*...
gi 149067050 700 SNLRKLWN 707
Cdd:TIGR02917 673 IGLAQLLL 680
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
376-517 |
5.97e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 68.79 E-value: 5.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 376 AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILM 455
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149067050 456 NQGKTEEARRTFLKCSEIPDEN------------LKDPHAHKSSVTSclyNLGKLYHEQGRYEEALSVYREAIQ 517
Cdd:COG4785 153 YLGRYELAIADLEKALELDPNDperalwlylaerKLDPEKALALLLE---DWATAYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
352-477 |
6.24e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.37 E-value: 6.24e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 352 KTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEA 429
Cdd:COG4783 12 QALLLAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 149067050 430 LHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDEN 477
Cdd:COG4783 92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
375-705 |
6.70e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.42 E-value: 6.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 375 PAKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIIL 454
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 455 MNQGKTEEARRTFLKCSEIPDENLkdphahkssvtSCLYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLyNMMGE 534
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYL-----------PALLLAGASEYQLGNLEQAYQYLNQILKYAPNS--HQAR-RLLAS 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 535 AYMRLSKlpeaehwYMESLRSKTDHIPAHLTYGKLLALTGRK-------SEAEKFFLKAIELDPTKGNCYMHYGQFLLEE 607
Cdd:TIGR02917 338 IQLRLGR-------VDEAIATLSPALGLDPDDPAALSLLGEAylalgdfEKAAEYLAKATELDPENAAARTQLGISKLSQ 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 608 SRLTEAAEMAKKAAELDSTEFDV-VFNAAHMLRQASLNEAAEkyydLAARLRPNYP--AALMNL-GAILHLNGRLQKAEA 683
Cdd:TIGR02917 411 GDPSEAIADLETAAQLDPELGRAdLLLILSYLRSGQFDKALA----AAKKLEKKQPdnASLHNLlGAIYLGKGDLAKARE 486
|
330 340
....*....|....*....|..
gi 149067050 684 NYLRALQLKPDDVITQSNLRKL 705
Cdd:TIGR02917 487 AFEKALSIEPDFFPAAANLARI 508
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
498-591 |
3.45e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.88 E-value: 3.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 498 LYHEQGRYEEALSVYREAIQKMPRQFApqsLYNMMGEAYMRLSKLPEAEHwYMESLRSKTDHIPAHLTYGKLLALTGRKS 577
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNAD---ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....
gi 149067050 578 EAEKFFLKAIELDP 591
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
398-522 |
5.07e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 64.60 E-value: 5.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 398 AYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDEN 477
Cdd:COG5010 42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN 121
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 149067050 478 lkdPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQ 522
Cdd:COG5010 122 ---PNAY--------SNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
544-695 |
1.55e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.33 E-value: 1.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 544 EAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGncymhygqflleesrlteaaemakkaael 623
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA----------------------------- 51
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 149067050 624 dstefDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:COG4235 52 -----DALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
367-477 |
1.69e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.95 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 367 YRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLA 444
Cdd:COG4235 6 LRQALAANPndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|...
gi 149067050 445 SAYLNTGIILMNQGKTEEARRTFLKCSEIPDEN 477
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
395-555 |
1.97e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.67 E-value: 1.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 395 AEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIp 474
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 475 deNLKDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNmMGEAYMRLSKLPEAEHWYMESLR 554
Cdd:COG5010 84 --DPNNPELY--------YNLALLYSRSGDKDEAKEYYEKALALSPDN--PNAYSN-LAALLLSLGQDDEAKAALQRALG 150
|
.
gi 149067050 555 S 555
Cdd:COG5010 151 T 151
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
419-521 |
1.99e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.95 E-value: 1.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 419 LLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRtFLKCSEIpdeNLKDPHAhkssvtscLYNLGKL 498
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL---DPNNAEA--------LLNLAEL 68
|
90 100
....*....|....*....|...
gi 149067050 499 YHEQGRYEEALSVYREAIQKMPR 521
Cdd:COG3063 69 LLELGDYDEALAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
323-469 |
3.25e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 62.29 E-value: 3.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 323 RALYVKVQKRFLKSLVFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAEIAYRNA 402
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149067050 403 LYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLK 469
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
353-718 |
9.66e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.49 E-value: 9.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 353 TAIRNGDWQNEEMLYRSGIKVNPAKA--WGNLGNVLKSQSKISEAEIAYRNAL-----YY--RSNMADMLYNLGLLLQEN 423
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNAslHNLLGAIYLGKGDLAKAREAFEKALsiepdFFpaAANLARIDIQEGNPDDAI 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 424 SRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRtflkcseipdenlKDPHAHKSSVtsclyNLGKLYHEQG 503
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-------------LNPQEIEPAL-----ALAQYYLGKG 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 504 RYEEALSVYREAIQKMPRqfaPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFF 583
Cdd:TIGR02917 582 QLKKALAILNEAADAAPD---SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 584 LKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTE-FDVVFNAAHMLRQASLnEAAEKYYDLAARLRPNyP 662
Cdd:TIGR02917 659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAaLGFELEGDLYLRQKDY-PAAIQAYRKALKRAPS-S 736
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 149067050 663 AALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWnIMEKQGLKTSK 718
Cdd:TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY-LAQKDYDKAIK 791
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
597-702 |
1.48e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.36 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 597 YMHYGQFLLEESRLTEAAEMAKKAAELDSTEFDVVFNAAHMLRQaslNEAAEKYYDLAARLRPNYPAALMNLGAILHLNG 676
Cdd:COG5010 26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGD---FEESLALLEQALQLDPNNPELYYNLALLYSRSG 102
|
90 100
....*....|....*....|....*.
gi 149067050 677 RLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG5010 103 DKDEAKEYYEKALALSPDNPNAYSNL 128
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
389-696 |
2.82e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 63.95 E-value: 2.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 389 QSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENS---------RFAEALHYYKLAVgsRPTLASAYLntgiilmNQGK 459
Cdd:TIGR02917 35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGdyaaaekelRKALSLGYPKNQV--LPLLARAYL-------LQGK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 460 TEEARRTFLKCSEIPDENLKDPHAHkssvtsclynLGKLYHEQGRYEEALSVYREAIqkmprQFAPQSLYNMMGEAYMRL 539
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLAL----------RGLAYLGLGQLELAQKSYEQAL-----AIDPRSLYAKLGLAQLAL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 540 S--KLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMA 617
Cdd:TIGR02917 171 AenRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 149067050 618 KKAAELDSTEFDVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDV 696
Cdd:TIGR02917 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSH 329
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
385-479 |
5.22e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.72 E-value: 5.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 385 VLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKlAVGSRPTLASAYLNTGIILMNQGKTEEAR 464
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 149067050 465 RTFLKCSEIPDENLK 479
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
534-693 |
7.37e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.05 E-value: 7.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 534 EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLtea 613
Cdd:COG5010 28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK--- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 614 aemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKP 693
Cdd:COG5010 105 -------------------------------DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
569-694 |
1.03e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 1.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 569 LLALTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfnaahmlrqaslnEAAE 648
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY----------------------------------DEAI 46
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 149067050 649 KyYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:COG3063 47 A-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
395-588 |
1.49e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.77 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 395 AEIAYRNALYYRsNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI- 473
Cdd:COG4785 59 AAERIDRALALP-DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELd 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 474 PDenlkDPHAHkssvtsclYNLGKLYHEQGRYEEALSVYREAIQKMPrqfapqslynmmgeaymrlsKLPEAEHW-YMES 552
Cdd:COG4785 138 PD----YAYAY--------LNRGIALYYLGRYELAIADLEKALELDP--------------------NDPERALWlYLAE 185
|
170 180 190
....*....|....*....|....*....|....*...
gi 149067050 553 LRSKTDHIPAHLT--YGKLLALTGRKSEAEKFFLKAIE 588
Cdd:COG4785 186 RKLDPEKALALLLedWATAYLLQGDTEEARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
354-443 |
2.53e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 354 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAeIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 431
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|..
gi 149067050 432 YYKLAVGSRPTL 443
Cdd:COG3063 81 YLERALELDPSA 92
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
497-591 |
2.74e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 55.38 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 497 KLYHEQGRYEEALSVYREAIQKMPR-QFAPQSLYnMMGEAYMRLSKLPEAEHWYMESLRSKTDHIP---AHLTYGKLLAL 572
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLE 79
|
90
....*....|....*....
gi 149067050 573 TGRKSEAEKFFLKAIELDP 591
Cdd:COG1729 80 LGDYDKARATLEELIKKYP 98
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
638-702 |
3.11e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 3.11e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 149067050 638 LRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEAnYLRALQLKPDDVITQSNL 702
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
443-517 |
3.42e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 53.93 E-value: 3.42e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 149067050 443 LASAYLNTGIILMNQGKTEEARRTFLKCSEIpDENLKDPHAHKSSVTscLYNLGKLYHEQGRYEEALSVYREAIQ 517
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEI-ARRLLGPDHPLTATT--LLNLGRLYLELGRYEEALELLERALA 73
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
561-705 |
3.68e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 3.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 561 PAHLTYGKLLALTGRKSEAEKFFLKAIELDPTkgncymhygqflleesrlteaaemakkaaeldstEFDVVFNAAHMLRQ 640
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPD----------------------------------NPEAFALLGEILLQ 50
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 149067050 641 ASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKL 705
Cdd:COG4783 51 LGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
452-551 |
5.62e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 54.23 E-value: 5.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 452 IILMNQGKTEEARRTFLK-CSEIPDENLKDphahkssvtSCLYNLGKLYHEQGRYEEALSVYREAIQKMPR-QFAPQSLY 529
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAfLKRYPNSPLAP---------DALYWLGEAYYALGDYDEAAEAFEKLLKRYPDsPKAPDALL 71
|
90 100
....*....|....*....|..
gi 149067050 530 nMMGEAYMRLSKLPEAEHWYME 551
Cdd:COG1729 72 -KLGLSYLELGDYDKARATLEE 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
492-610 |
5.80e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 5.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 492 LYNLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLA 571
Cdd:COG5010 20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 149067050 572 LTGRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRL 610
Cdd:COG5010 100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
353-600 |
1.48e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.17 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 353 TAIRNGDWQNEEMLYRSGIKVNPAK--AWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEAL 430
Cdd:TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSalALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 431 HYYKLAVGSRPTLASAYLNTGIILMNQGKTEEAR---RTFLKCSEIPDENLKDPHAH---------------------KS 486
Cdd:TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIqayRKALKRAPSSQNAIKLHRALlasgntaeavktleawlkthpND 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 487 SVTscLYNLGKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNMmgeAYMRL-SKLPEAEHWYMESLRSKtDHIPAHL- 564
Cdd:TIGR02917 770 AVL--RTALAELYLAQKDYDKAIKHYQTVVKKAPDN--AVVLNNL---AWLYLeLKDPRALEYAERALKLA-PNIPAILd 841
|
250 260 270
....*....|....*....|....*....|....*.
gi 149067050 565 TYGKLLALTGRKSEAEKFFLKAIELDPTKGNCYMHY 600
Cdd:TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
422-520 |
1.87e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 1.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 422 ENSRFAEALHYYKLAVGSRPT---LASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKDPHAhkssvtscLYNLGKL 498
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA--------LLKLGLS 76
|
90 100
....*....|....*....|..
gi 149067050 499 YHEQGRYEEALSVYREAIQKMP 520
Cdd:COG1729 77 YLELGDYDKARATLEELIKKYP 98
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
535-610 |
2.63e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.71 E-value: 2.63e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 149067050 535 AYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKLLALTGRKSEAEKfFLKAIELDPTKGNCYMHYGQFLLEESRL 610
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDY 75
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
322-441 |
4.92e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.04 E-value: 4.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 322 ARALYVKVQKRFLKSLVFYATATLIVFYGLKTAIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAY 399
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnnPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 149067050 400 RNALYYRSNMADMLYNLGLLLQENSRFAEALHYYKLAVGSRP 441
Cdd:COG5010 112 EKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
404-558 |
6.01e-08 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 53.14 E-value: 6.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 404 YYRSNMAdmlynlgllLQENSRFAEALHYYK--LAVGSRPTLASAYL-NTGIILMNQGKTEEARRTFLKCSEipdENLKD 480
Cdd:PRK02603 38 YYRDGMS---------AQADGEYAEALENYEeaLKLEEDPNDRSYILyNMGIIYASNGEHDKALEYYHQALE---LNPKQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 481 PhahkssvtSCLYNLGKLYHEQGRYEEALSVYREAiqkmprqfapQSLYNMMGEAYMRLSKL-P----EAEHWYMESLRS 555
Cdd:PRK02603 106 P--------SALNNIAVIYHKRGEKAEEAGDQDEA----------EALFDKAAEYWKQAIRLaPnnyiEAQNWLKTTGRS 167
|
...
gi 149067050 556 KTD 558
Cdd:PRK02603 168 NID 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
635-702 |
8.47e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 8.47e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 149067050 635 AHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
494-696 |
1.11e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.38 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 494 NLGKLYHEQGRYEEALSVYREAIQKMPRQFAPQSLYNMMGEAYMRLSKLPEAEHWYMESLR---SKTDHIPAHLTYGKLL 570
Cdd:COG4785 4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDralALPDLAQLYYERGVAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 571 ALTGRKSEAEKFFLKAIELDPTKGNCYMHYGqflleesrlteaaemakkaaeldstefdvvfnAAHMLRQAslNEAAEKY 650
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRG--------------------------------LAYLLLGD--YDAALED 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 149067050 651 YDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDV 696
Cdd:COG4785 130 FDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
632-702 |
2.44e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 2.44e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 149067050 632 FNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNL 702
Cdd:COG4785 77 YERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
629-713 |
4.86e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 4.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 629 DVVFNAAHMLRQASLNEAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNlrkLWNI 708
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN---LGLA 81
|
....*
gi 149067050 709 MEKQG 713
Cdd:COG4783 82 LLKAG 86
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
428-658 |
5.82e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.68 E-value: 5.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 428 EALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIPDENLKdPHAHkssvtsclynLGKLYHEQGRYEE 507
Cdd:TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-SHIQ----------LGVTQYKEGSIAS 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 508 ALSVYREAIQKMPRqfAPQsLYNMMGEAYMRLSKLPEAEHWYMES--LRSKTDHIPAHLT--YGKLLALTGRK---SEAE 580
Cdd:TIGR00990 452 SMATFRRCKKNFPE--APD-VYNYYGELLLDQNKFDEAIEKFDTAieLEKETKPMYMNVLplINKALALFQWKqdfIEAE 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 581 KFFLKAIELDPTKGNCYMHYGQFLLEESRLTEAAEMAKKAAELDSTEfdvvfnaAHMLRQASLNEAA-------EKYYDL 653
Cdd:TIGR00990 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE-------GELVQAISYAEATrtqiqvqEDYPVL 601
|
....*
gi 149067050 654 AARLR 658
Cdd:TIGR00990 602 ASKLQ 606
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
413-589 |
2.69e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 49.93 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 413 LYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEIpdenlkDPHAhksSVTSCL 492
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL------DPDG---GYEKYL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 493 YnLGKLyhEQGryEEALSVYREAIQKMPRQFAPQS------------LYNMMGEA-------YMR-LSKLPEAE---HWY 549
Cdd:cd24142 74 Y-LGQL--SGG--EEALQYYEKGIEILEEELQALQaasaeaeeeaeeLKRKLSSAlcalaeiYMTdLCDEPDAEqrcEEL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 149067050 550 MES-LRSKTDHIPAHLTYGKLLALTGRKSEAEKFFLKAIEL 589
Cdd:cd24142 149 ITKaLELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
364-583 |
4.84e-06 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 48.72 E-value: 4.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 364 EMLYRSGIKVNPAKAWGNLGNVLKSQSKISEAEIAYRNalyyrsnmADMLYNlglllqensrfaealhyyklavgsRPTL 443
Cdd:COG4700 48 EVLPELRNSRDARRVQRAARNALDPGRELRELEKALEF--------ADTVQN------------------------RVRL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 444 ASAYLntgiilmNQGKTEEARRTFLKCseipdenLKDPHAHKSSVtscLYNLGKLYHEQGRYEEALSvYREAIQKMPRQF 523
Cdd:COG4700 96 ADALL-------ELGRYDEAIELYEEA-------LTGIFADDPHI---LLGLAQALFELGRYAEALE-TLEKLIAKNPDF 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 524 APQSLYNMMGEAYMRLSKLPEAEHWYmESLRSKTDHIPAHLTYGKLLALTGRKSEAEKFF 583
Cdd:COG4700 158 KSSDAHLLYARALEALGDLEAAEAEL-EALARRYSGPEARYRYAKFLARQGRTAEAKELL 216
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
409-473 |
4.86e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 4.86e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 149067050 409 MADMLYNLGLLLQENSRFAEALHYYKLAV--------GSRPTLASAYLNTGIILMNQGKTEEARRTFLKCSEI 473
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
389-467 |
9.53e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.98 E-value: 9.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 389 QSKISEAEIAYRNAL--YYRSNMA-DMLYNLGLLLQENSRFAEALHYYKLAVGSRPT---LASAYLNTGIILMNQGKTEE 462
Cdd:COG1729 6 AGDYDEAIAAFKAFLkrYPNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDK 85
|
....*
gi 149067050 463 ARRTF 467
Cdd:COG1729 86 ARATL 90
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
632-695 |
2.23e-05 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 42.71 E-value: 2.23e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149067050 632 FNAAHMLRQASLNEAAEKYYDLAARLRPNYP---AALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESPdaaAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
393-517 |
2.27e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 47.93 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 393 SEAEIAYRNALYYRsnMADMLYNLGLLLQENSRFAEALH------YYKLAVGSRPTLASAYLNTGIILMnqGKTEEARRT 466
Cdd:COG3899 737 PDPEEEYRLALLLE--LAEALYLAGRFEEAEALLERALAaralaaLAALRHGNPPASARAYANLGLLLL--GDYEEAYEF 812
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 149067050 467 FLKCSEIPDEnlkdpHAHKSSVTSCLYNLGKLYHEQGRYEEALSVYREAIQ 517
Cdd:COG3899 813 GELALALAER-----LGDRRLEARALFNLGFILHWLGPLREALELLREALE 858
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
492-521 |
3.22e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 41.35 E-value: 3.22e-05
10 20 30
....*....|....*....|....*....|
gi 149067050 492 LYNLGKLYHEQGRYEEALSVYREAIQKMPR 521
Cdd:pfam07719 4 LYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
496-539 |
3.75e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 41.30 E-value: 3.75e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 149067050 496 GKLYHEQGRYEEALSVYREAIQKMPRQfaPQSLYNmMGEAYMRL 539
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDN--PEAYYN-LGLAYYKL 41
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
662-695 |
5.06e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 5.06e-05
10 20 30
....*....|....*....|....*....|....
gi 149067050 662 PAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
494-694 |
5.84e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 45.02 E-value: 5.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 494 NLGKLYHEQGRYEEALSVYREAIQKMPRQFAPqslYNMMGEAYMRLsklpeaehwymeslrsktdhipahltygkllalt 573
Cdd:TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLA---YLALALYYQQL---------------------------------- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 574 GRKSEAEKFFLKAIELDPTKGNCYMHYGQFLLEESRLteaaemakkaaeldstefdvvfnaahmlrqaslnEAAEKYYDL 653
Cdd:TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY----------------------------------EQAMQQFEQ 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 149067050 654 AARLrPNYP---AALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:TIGR02521 125 AIED-PLYPqpaRSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
491-520 |
8.69e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 40.12 E-value: 8.69e-05
10 20 30
....*....|....*....|....*....|
gi 149067050 491 CLYNLGKLYHEQGRYEEALSVYREAIQKMP 520
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
491-517 |
1.33e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 39.45 E-value: 1.33e-04
10 20
....*....|....*....|....*..
gi 149067050 491 CLYNLGKLYHEQGRYEEALSVYREAIQ 517
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALA 27
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
393-472 |
1.45e-04 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 43.07 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 393 SEAEIA-----YRNALYYRSNMAD---MLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGII-------LMNQ 457
Cdd:CHL00033 47 SEGEYAealqnYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIchyrgeqAIEQ 126
|
90
....*....|....*
gi 149067050 458 GKTEEARRTFLKCSE 472
Cdd:CHL00033 127 GDSEIAEAWFDQAAE 141
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
492-517 |
1.66e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.33 E-value: 1.66e-04
10 20
....*....|....*....|....*.
gi 149067050 492 LYNLGKLYHEQGRYEEALSVYREAIQ 517
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALE 29
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
393-472 |
2.00e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 42.74 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 393 SEAEIAYRNALYYRSNMAD---MLYNLGLLLQENSRFAEALHYYKLAVGSRPTLASAYLNTGIILMNQGKT-------EE 462
Cdd:PRK02603 52 AEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKaeeagdqDE 131
|
90
....*....|
gi 149067050 463 ARRTFLKCSE 472
Cdd:PRK02603 132 AEALFDKAAE 141
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
633-694 |
2.18e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 40.06 E-value: 2.18e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 633 NAAHMLRQASLNEAAEKYYDLAARL--------RPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
360-518 |
3.46e-04 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 43.11 E-value: 3.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 360 WQNEEMLYRSGIKVNPaKAWG----NLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLG-LLLQENSRFAEALHYYK 434
Cdd:cd24145 128 KAVEILLKLGELWMSP-SEVGafleELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHsLVLMNNEAAELALHALR 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 435 LAVGSRPTLASAYLNTGiilmNQGKTEEARRTF---LKCSEIPDENLKDPHAHKSSVTScLYNLGKLYHEQGRYEEALSV 511
Cdd:cd24145 207 KPLSSTLIEASRLPQKS----RDQLLEAALKWAqkaLDVAKSIKPKDRDPECDQACALA-LYNLGVIAEMLGNLDEARKL 281
|
....*..
gi 149067050 512 YREAIQK 518
Cdd:cd24145 282 YKEAISL 288
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
488-517 |
3.81e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 38.64 E-value: 3.81e-04
10 20 30
....*....|....*....|....*....|
gi 149067050 488 VTSCLYNLGKLYHEQGRYEEALSVYREAIQ 517
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALA 30
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
662-695 |
4.67e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 4.67e-04
10 20 30
....*....|....*....|....*....|....
gi 149067050 662 PAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
494-606 |
6.45e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.18 E-value: 6.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 494 NLGKLYHEQGRYEEALSVYREAIQKmprqFAPQSLYNMMG--EAYMRLSKLPEAEHwYMESLRSK---TDHIPAHLTYGK 568
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALTG----IFADDPHILLGlaQALFELGRYAEALE-TLEKLIAKnpdFKSSDAHLLYAR 168
|
90 100 110
....*....|....*....|....*....|....*....
gi 149067050 569 LLALTGRKSEAEKFFLKAIELDPT-KGNCYmhYGQFLLE 606
Cdd:COG4700 169 ALEALGDLEAAEAELEALARRYSGpEARYR--YAKFLAR 205
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
376-437 |
6.47e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 6.47e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 376 AKAWGNLGNVLKSQSKISEAEIAYRNALY--------YRSNMADMLYNLGLLLQENSRFAEALHYYKLAV 437
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
448-517 |
6.59e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.47 E-value: 6.59e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 448 LNTGIILMNQGKTEEARRTFlkcSEIPDENLKDPHAHkssvtSCLYNLGKLYHEQGRYEEALSVYREAIQ 517
Cdd:pfam13432 1 LALARAALRAGDYDDAAAAL---EAALARFPESPDAA-----AALLLLGLAALRQGRLAEAAAAYRAALR 62
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
444-544 |
9.03e-04 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 41.79 E-value: 9.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 444 ASAYLNTGIILMNQGKTEEARRTFlkcseipdENLKD-----PHAHKSsvtscLYNLGKLYHEQGRYEEALSVYREAIQK 518
Cdd:COG4105 32 AEELYEEAKEALEKGDYEKAIKLF--------EELEPrypgsPYAEQA-----QLMLAYAYYKQGDYEEAIAAADRFIKL 98
|
90 100
....*....|....*....|....*..
gi 149067050 519 MPR-QFAPQSLYnMMGEAYMRLSKLPE 544
Cdd:COG4105 99 YPNsPNADYAYY-LRGLSYYEQSPDSD 124
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
356-508 |
9.46e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 9.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 356 RNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRfAEALHYY 433
Cdd:TIGR02917 748 ASGNTAEAVKTLEAWLKTHPndAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 149067050 434 KLAVGSRPTLAsAYLNT-GIILMNQGKTEEARRTFLKCSEIPDENLkdphahkssvtSCLYNLGKLYHEQGRYEEA 508
Cdd:TIGR02917 827 ERALKLAPNIP-AILDTlGWLLVEKGEADRALPLLRKAVNIAPEAA-----------AIRYHLALALLATGRKAEA 890
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
492-589 |
1.06e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.14 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 492 LYNLGKLYHEQGRYEEALSVYREAIQkmprqfapqslynmmgeaymRLSKLPEAEHwymeslrskTDHIPAHLTYGKLLA 571
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALE--------------------IARRLLGPDH---------PLTATTLLNLGRLYL 56
|
90
....*....|....*...
gi 149067050 572 LTGRKSEAEKFFLKAIEL 589
Cdd:pfam13424 57 ELGRYEEALELLERALAL 74
|
|
| DUF3856 |
pfam12968 |
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP ... |
501-589 |
1.23e-03 |
|
Domain of Unknown Function (DUF3856); TPR-like protein. The 2hr2 structure belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family. A DALI search gives hits with the putative peptidyl-prolyl isomerase 2fbn (Z=16), the SGTA protein (Z=16), the PLCR protein 2qfc (Z=16), a putative FK506-binding protein (PDB:1qz2-A; DALI Z-score 15.3; RMSD 2.9; 16% sequence identity within 132 superimposed residues), and with the tetratricopeptide repeats of the protein phosphatase 5 (PDB:2bug; DALI Z-score 15.1; RMSD 2.5; 19% sequence identity within 117 superimposed residues).
Pssm-ID: 463761 [Multi-domain] Cd Length: 142 Bit Score: 39.84 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 501 EQGRYEEALSVYREAIQkMPRQFAPQSLYNMMG----------EAYMRLSKLPEAEHWYMESLRSKTDHIPAHLTYGKL- 569
Cdd:pfam12968 21 EAAAFEEAAESYRRAME-MSRTIPTEEAFDYDGfdafchaglsEALIGLGRYEEALHSAEKALRYFNRRGELHQDEGKLw 99
|
90 100 110
....*....|....*....|....*....|
gi 149067050 570 --------LAL--TGRKSEAEKFFLKAIEL 589
Cdd:pfam12968 100 iaavfskaRALegLGRKEEAIKYFRMAGEM 129
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
662-694 |
1.34e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.73 E-value: 1.34e-03
10 20 30
....*....|....*....|....*....|...
gi 149067050 662 PAALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
645-695 |
1.50e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 41.46 E-value: 1.50e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 149067050 645 EAAEKYYDLAARLRPNYPAALMNLGAILHLNGRLQKAEANYLRALQLKPDD 695
Cdd:cd24142 17 ELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
421-694 |
1.65e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.05 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 421 QENSRFAEALHYYKLAVGSRPTLASAYLNTGI-ILMNQGKTEEARRTFlkcSEIPDENLKDPHAhkssvtscLYNLGKLY 499
Cdd:COG3071 61 QALGDYERRDEYLAQALELAPEAELAVLLTRAeLLLDQGQAEQALATL---EALRAGAPRHPQV--------LRLLLQAY 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 500 HEQGRYEEALSVYREAIQKmpRQFAPQSLYNMMGEAYMRL----SKLPEAEHWYMESLRSKTDHIPA-HLTYGKLLALTG 574
Cdd:COG3071 130 RQLGDWEELLELLPALRKH--KALSAEEAQALERRAYLGLlrqaARDAEALKALWKALPRAERRDPElAAAYARALIALG 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 575 RKSEAEKFFLKAIELDPTKGNCYmHYGQFLLEE-----SRLTEAAEMAKKAAELDSTefdvvfnAAHMLRQASLNEAAEK 649
Cdd:COG3071 208 DHDEAERLLREALKRQWDPRLVR-LYGRLQGGDpakqlKRAEKWLKKHPNDPDLLLA-------LGRLCLRNQLWGKARE 279
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 149067050 650 YYDLAARLRPNyPAALMNLGAILHLNGRLQKAEANYLRALQLKPD 694
Cdd:COG3071 280 YLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
352-437 |
1.97e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.43 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 352 KTAIRNGDWQNEEMLYRSGIKVNP-----AKAWGNLGNVLKSQSKISEAEIAYRNALYYRSN---MADMLYNLGLLLQEN 423
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPnsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
90
....*....|....
gi 149067050 424 SRFAEALHYYKLAV 437
Cdd:COG1729 81 GDYDKARATLEELI 94
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
492-517 |
2.52e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.84 E-value: 2.52e-03
10 20
....*....|....*....|....*.
gi 149067050 492 LYNLGKLYHEQGRYEEALSVYREAIQ 517
Cdd:pfam13181 4 YYNLGLIYLKLGDYEEAKEYYEKALE 29
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
493-559 |
3.12e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.55 E-value: 3.12e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 149067050 493 YNLGKLYHEQGRYEEALSVYREAIQKMPRQ-FAPQSLYNMmGEAYMRLSKLPEAEHWYMESLRSKTDH 559
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESpDAAAALLLL-GLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
492-602 |
3.19e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.30 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 492 LYNLGKLYHEQGRYEEALSVYREAIQKMPrqfapqslynmmgeaymrlsklpeaehwymeslrsktDHIPAHLTYGKLLA 571
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEP-------------------------------------NNVEALELLGEILL 45
|
90 100 110
....*....|....*....|....*....|...
gi 149067050 572 LTGRKSEAEKFFLKAIELDPTkGNC--YMHYGQ 602
Cdd:cd24142 46 ELGDVEEAREVLLRAIELDPD-GGYekYLYLGQ 77
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
414-469 |
3.58e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.55 E-value: 3.58e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 149067050 414 YNLGLLLQENSRFAEALHYYKLAVGSRPTL---ASAYLNTGIILMNQGKTEEARRTFLK 469
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPESpdaAAALLLLGLAALRQGRLAEAAAAYRA 59
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
645-713 |
4.02e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 4.02e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 149067050 645 EAAEKYYDLAARLRPN---YPAALMNLGAILHLNGRLQKAEANYLRALQLKPDDVITQSNLRKLWNIMEKQG 713
Cdd:COG1729 10 DEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
354-466 |
6.33e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.07 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149067050 354 AIRNGDWQNEEMLYRSGIKVNP--AKAWGNLGNVLKsQSKISEAEIAYRNALYYRSNMADMLYNLGLLLQENSRFAEALH 431
Cdd:TIGR02917 780 YLAQKDYDKAIKHYQTVVKKAPdnAVVLNNLAWLYL-ELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858
|
90 100 110
....*....|....*....|....*....|....*
gi 149067050 432 YYKLAVGSRPTLASAYLNTGIILMNQGKTEEARRT 466
Cdd:TIGR02917 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
634-691 |
9.10e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 39.46 E-value: 9.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149067050 634 AAHMLRQASLNEAAEKYYDLAARL-----RPNYPAAL-MNLGAILHLNGRLQKAEANYLRALQL 691
Cdd:COG3899 711 AARRALARGAYAEALRYLERALELlppdpEEEYRLALlLELAEALYLAGRFEEAEALLERALAA 774
|
|
| |
