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Conserved domains on  [gi|149066329|gb|EDM16202|]
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squalene epoxidase [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NADB_Rossmann super family cl21454
Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a ...
 276-547 3.11e-141

Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The NADB domain is found in numerous dehydrogenases of metabolic pathways such as glycolysis, and many other redox enzymes. NAD binding involves numerous hydrogen-bonds and van der Waals contacts, in particular H-bonding of residues in a turn between the first strand and the subsequent helix of the Rossmann-fold topology. Characteristically, this turn exhibits a consensus binding pattern similar to GXGXXG, in which the first 2 glycines participate in NAD(P)-binding, and the third facilitates close packing of the helix to the beta-strand. Typically, proteins in this family contain a second domain in addition to the NADB domain, which is responsible for specifically binding a substrate and catalyzing a particular enzymatic reaction.


The actual alignment was detected with superfamily member pfam08491:

Pssm-ID: 473865  Cd Length: 276  Bit Score: 409.80  E-value: 3.11e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  276 HAPLTVVADGLFSKFRKNLISNKVSVSSHFVGFIMKDAPQFKANFAELVLVDPSPVLIYQISPSETRVLVDIRGE-LPR- 353
Cdd:pfam08491   1 FAPLTIVCDGCFSKFRKSLSDNKPEVGSYFVGLILKNADLPAPNHGHVILGKPSPVLLYQISSTETRILCDYPGPkLPSi 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  354 ---NLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLTGGGMTVALKDIKIW 430
Cdd:pfam08491  81 angELKEYLKKSVAPQIPKELRPSFLAALEEGKIRSMPNSFLPASKNRKKGLILLGDALNMRHPLTGGGMTVGLNDIVLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  431 RQLLKDIPDLYDDAAIFQAKKSFFWSRKrSHSFVVNVLAQALYELFSATDDSLRQLRKACFLYFKLGGECLTGPVGLLSI 510
Cdd:pfam08491 161 RKLLGPLRDLSDREKVSKVLKSFHWKRK-PYDAVINTLSIALYSLFAADSDELKALRKGCFDYFKLGGDCVSGPVALLSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 149066329  511 LSPDPLLLIRHFFSVAVYATYFCFKSEPWATKPRALF 547
Cdd:pfam08491 240 LLPRPLLLFGHFFAVALYSIYQNFIPRPILGSPLALL 276
PRK07045 super family cl31373
putative monooxygenase; Reviewed
 124-426 6.85e-15

putative monooxygenase; Reviewed


The actual alignment was detected with superfamily member PRK07045:

Pssm-ID: 136171 [Multi-domain]  Cd Length: 388  Bit Score: 76.48  E-value: 6.85e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 124 EVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGY-VIHDCEsr 202
Cdd:PRK07045   7 DVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMrLYHDKE-- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 203 sevqipyPVSENNQVQSGVAfhhGKFIM----SLRKAAMA----EPNVKFIEGVVLRLLE--EDDAVIGVQYKDKETgdt 272
Cdd:PRK07045  85 -------LIASLDYRSASAL---GYFILipceQLRRLLLAkldgLPNVRLRFETSIERIErdADGTVTSVTLSDGER--- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 273 kelHAPLTVV-ADGLFSKFRKNLIsnKVSVSSHFVGfimkdAPQFKANFA--------ELVLVDPSPVL--IYQISPSET 341
Cdd:PRK07045 152 ---VAPTVLVgADGARSMIRDDVL--RMPAERVPYA-----TPMAFGTIAltdsvrecNRLYVDSNQGLayFYPIGDQAT 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 342 RVLV-----DIRGELPRNLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLT 416
Cdd:PRK07045 222 RLVVsfpadEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPIT 301

                        330
                 ....*....|
gi 149066329 417 GGGMTVALKD 426
Cdd:PRK07045 302 GQGMNLAIED 311
 
Name Accession Description Interval E-value
SE pfam08491
Squalene epoxidase; This domain is found in squalene epoxidase (SE) and related proteins which ...
 276-547 3.11e-141

Squalene epoxidase; This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.


Pssm-ID: 400679  Cd Length: 276  Bit Score: 409.80  E-value: 3.11e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  276 HAPLTVVADGLFSKFRKNLISNKVSVSSHFVGFIMKDAPQFKANFAELVLVDPSPVLIYQISPSETRVLVDIRGE-LPR- 353
Cdd:pfam08491   1 FAPLTIVCDGCFSKFRKSLSDNKPEVGSYFVGLILKNADLPAPNHGHVILGKPSPVLLYQISSTETRILCDYPGPkLPSi 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  354 ---NLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLTGGGMTVALKDIKIW 430
Cdd:pfam08491  81 angELKEYLKKSVAPQIPKELRPSFLAALEEGKIRSMPNSFLPASKNRKKGLILLGDALNMRHPLTGGGMTVGLNDIVLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  431 RQLLKDIPDLYDDAAIFQAKKSFFWSRKrSHSFVVNVLAQALYELFSATDDSLRQLRKACFLYFKLGGECLTGPVGLLSI 510
Cdd:pfam08491 161 RKLLGPLRDLSDREKVSKVLKSFHWKRK-PYDAVINTLSIALYSLFAADSDELKALRKGCFDYFKLGGDCVSGPVALLSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 149066329  511 LSPDPLLLIRHFFSVAVYATYFCFKSEPWATKPRALF 547
Cdd:pfam08491 240 LLPRPLLLFGHFFAVALYSIYQNFIPRPILGSPLALL 276
PTZ00367 PTZ00367
squalene epoxidase; Provisional
 122-567 6.29e-121

squalene epoxidase; Provisional


Pssm-ID: 240384 [Multi-domain]  Cd Length: 567  Bit Score: 368.41  E-value: 6.29e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 122 DPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLK-EPDRILGECLQPGGYRVLRELGLGDTVESLNAHhIHGYVIHDcE 200
Cdd:PTZ00367  33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFsKPDRIVGELLQPGGVNALKELGMEECAEGIGMP-CFGYVVFD-H 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 201 SRSEVQIPYpvsenNQVQSGVAFHHGKFIMSLRKAAMA--EPNVKFIEGVVLRLLEED----DAVIGVQYKDKETGD--- 271
Cdd:PTZ00367 111 KGKQVKLPY-----GAGASGVSFHFGDFVQNLRSHVFHncQDNVTMLEGTVNSLLEEGpgfsERAYGVEYTEAEKYDvpe 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 272 -----------------TKELHAPLTVVADGLFSKFRKNLISNKVSVS--SHFVGFIMKDAPQFKANFAELVLVDPSPVL 332
Cdd:PTZ00367 186 npfredppsanpsattvRKVATAPLVVMCDGGMSKFKSRYQHYTPASEnhSHFVGLVLKNVRLPKEQHGTVFLGKTGPIL 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 333 IYQISPSETRVLVDIRGELPRNLRE---YMTEQIYPQIPDHLKESFLEACQNA-RLRTMPASFLPPSSVNKRGVLLLGDA 408
Cdd:PTZ00367 266 SYRLDDNELRVLVDYNKPTLPSLEEqseWLIEDVAPHLPENMRESFIRASKDTkRIRSMPNARYPPAFPSIKGYVGIGDH 345

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 409 YNLRHPLTGGGMTVALKDIKIWRQLLKDIP-----DLYDDAAI---FQAKKSFFWSRKRSHSFVVNVLAQALYELFSAtd 480
Cdd:PTZ00367 346 ANQRHPLTGGGMTCCFSDCIRLAKSLTGIKslrsiDQNEMAEIedaIQAAILSYARNRKTHASTINILSWALYSVFSS-- 423

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 481 dslRQLRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVYA--------------------TYFCFKSEPWA 540
Cdd:PTZ00367 424 ---PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGvlnlimetgaysifgkqlssFEKLTNVASFF 500

                        490       500
                 ....*....|....*....|....*..
gi 149066329 541 TKPRALFSSGAILYKACSIIFPLIYSE 567
Cdd:PTZ00367 501 VDPERIKHALYLLGAATTIAAPLAKSE 527
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 121-489 2.39e-23

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 101.17  E-value: 2.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 121 TDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLnAHHIHGYVIHDCE 200
Cdd:COG0654    2 MRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLAR-GAPIRGIRVRDGS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 201 SRSEV-QIPYPVSennQVQSGVAFHHGKFIMSLRKAAmAEPNVKFIEGVVLRLLEEDDAVIGVQYKDKETgdtkeLHAPL 279
Cdd:COG0654   81 DGRVLaRFDAAET---GLPAGLVVPRADLERALLEAA-RALGVELRFGTEVTGLEQDADGVTVTLADGRT-----LRADL 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 280 TVVADGLFSKFRKnlisnkvsvsSHFVGFIMKDAPQfkanfaelvlvdpspvliyqispseTRVLVDIRGELprnlreym 359
Cdd:COG0654  152 VVGADGARSAVRR----------LLGIGFTGRDYPQ-------------------------RALWAGVRTEL-------- 188

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 360 tEQIYPQIPDHLKEsFLEAcqnARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLTGGGMTVALKDIKIWRQLLKDIPD 439
Cdd:COG0654  189 -RARLAAAGPRLGE-LLEL---SPRSAFPLRRRRAERWRRGRVVLLGDAAHTMHPLGGQGANLALRDAAALAWKLAAALR 263

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 149066329 440 LYDDAAIFQAkksFFWSRKRSHSFVVNvLAQALYELFSATDDSLRQLRKA 489
Cdd:COG0654  264 GRDDEAALAR---YERERRPRAARVQR-AADALGRLFHPDSPPLRLLRNA 309
PRK07045 PRK07045
putative monooxygenase; Reviewed
 124-426 6.85e-15

putative monooxygenase; Reviewed


Pssm-ID: 136171 [Multi-domain]  Cd Length: 388  Bit Score: 76.48  E-value: 6.85e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 124 EVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGY-VIHDCEsr 202
Cdd:PRK07045   7 DVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMrLYHDKE-- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 203 sevqipyPVSENNQVQSGVAfhhGKFIM----SLRKAAMA----EPNVKFIEGVVLRLLE--EDDAVIGVQYKDKETgdt 272
Cdd:PRK07045  85 -------LIASLDYRSASAL---GYFILipceQLRRLLLAkldgLPNVRLRFETSIERIErdADGTVTSVTLSDGER--- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 273 kelHAPLTVV-ADGLFSKFRKNLIsnKVSVSSHFVGfimkdAPQFKANFA--------ELVLVDPSPVL--IYQISPSET 341
Cdd:PRK07045 152 ---VAPTVLVgADGARSMIRDDVL--RMPAERVPYA-----TPMAFGTIAltdsvrecNRLYVDSNQGLayFYPIGDQAT 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 342 RVLV-----DIRGELPRNLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLT 416
Cdd:PRK07045 222 RLVVsfpadEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPIT 301

                        330
                 ....*....|
gi 149066329 417 GGGMTVALKD 426
Cdd:PRK07045 302 GQGMNLAIED 311
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
121-289 2.36e-06

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 49.90  E-value: 2.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 121 TDPEVIIIGSGVLGSALATVLSRDGRTVTVIERD---------------------------------LKEPDRILGE--- 164
Cdd:COG0665    1 ATADVVVIGGGIAGLSTAYHLARRGLDVTVLERGrpgsgasgrnagqlrpglaaladralvrlareaLDLWRELAAElgi 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 165 -CL--QPGGYRVLR-ELGLGDTVESLNAHHIHGYvihDCE--SRSEVQIPYPVSENNQVQSGV------AFHHGKFIMSL 232
Cdd:COG0665   81 dCDfrRTGVLYLARtEAELAALRAEAEALRALGL---PVEllDAAELREREPGLGSPDYAGGLydpddgHVDPAKLVRAL 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 149066329 233 RKAAmAEPNVKFIEGV-VLRLLEEDDAVIGVqykdkETGDTkELHAPLTVVADGLFSK 289
Cdd:COG0665  158 ARAA-RAAGVRIREGTpVTGLEREGGRVTGV-----RTERG-TVRADAVVLAAGAWSA 208
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 124-375 1.09e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 47.78  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  124 EVIIIGSGVLGSALATVLSRDGRTVTVIERDL--------------------KEPDRILGECL----------------- 166
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDdpgsgasgrnaglihpglryLEPSELARLALealdlweeleeelgidc 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  167 ---QPGGYRVLREL---GLGDTVESLNAHHIHGYVIhdceSRSEVQIPYPVSENNQ----VQSGVAFHHGKFIMSLRKAA 236
Cdd:pfam01266  81 gfrRCGVLVLARDEeeeALEKLLAALRRLGVPAELL----DAEELRELEPLLPGLRgglfYPDGGHVDPARLLRALARAA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  237 MAEpNVKFIEGVVLRLLEEDDAVIGVQykdkETGDTKELhapltVVADGLFSKF-RKNLISNKVSVSSHFVgFIMKDAPQ 315
Cdd:pfam01266 157 EAL-GVRIIEGTEVTGIEEEGGVWGVV----TTGEADAV-----VNAAGAWADLlALPGLRLPVRPVRGQV-LVLEPLPE 225

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  316 FKANFAELVLVDPSPVlIYQISPSETRVLVDIRGELPRNLREYMTEQIYPQIPDHLKESF 375
Cdd:pfam01266 226 ALLILPVPITVDPGRG-VYLRPRADGRLLLGGTDEEDGFDDPTPDPEEIEELLEAARRLF 284
 
Name Accession Description Interval E-value
SE pfam08491
Squalene epoxidase; This domain is found in squalene epoxidase (SE) and related proteins which ...
 276-547 3.11e-141

Squalene epoxidase; This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.


Pssm-ID: 400679  Cd Length: 276  Bit Score: 409.80  E-value: 3.11e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  276 HAPLTVVADGLFSKFRKNLISNKVSVSSHFVGFIMKDAPQFKANFAELVLVDPSPVLIYQISPSETRVLVDIRGE-LPR- 353
Cdd:pfam08491   1 FAPLTIVCDGCFSKFRKSLSDNKPEVGSYFVGLILKNADLPAPNHGHVILGKPSPVLLYQISSTETRILCDYPGPkLPSi 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  354 ---NLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLTGGGMTVALKDIKIW 430
Cdd:pfam08491  81 angELKEYLKKSVAPQIPKELRPSFLAALEEGKIRSMPNSFLPASKNRKKGLILLGDALNMRHPLTGGGMTVGLNDIVLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  431 RQLLKDIPDLYDDAAIFQAKKSFFWSRKrSHSFVVNVLAQALYELFSATDDSLRQLRKACFLYFKLGGECLTGPVGLLSI 510
Cdd:pfam08491 161 RKLLGPLRDLSDREKVSKVLKSFHWKRK-PYDAVINTLSIALYSLFAADSDELKALRKGCFDYFKLGGDCVSGPVALLSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 149066329  511 LSPDPLLLIRHFFSVAVYATYFCFKSEPWATKPRALF 547
Cdd:pfam08491 240 LLPRPLLLFGHFFAVALYSIYQNFIPRPILGSPLALL 276
PTZ00367 PTZ00367
squalene epoxidase; Provisional
 122-567 6.29e-121

squalene epoxidase; Provisional


Pssm-ID: 240384 [Multi-domain]  Cd Length: 567  Bit Score: 368.41  E-value: 6.29e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 122 DPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLK-EPDRILGECLQPGGYRVLRELGLGDTVESLNAHhIHGYVIHDcE 200
Cdd:PTZ00367  33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFsKPDRIVGELLQPGGVNALKELGMEECAEGIGMP-CFGYVVFD-H 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 201 SRSEVQIPYpvsenNQVQSGVAFHHGKFIMSLRKAAMA--EPNVKFIEGVVLRLLEED----DAVIGVQYKDKETGD--- 271
Cdd:PTZ00367 111 KGKQVKLPY-----GAGASGVSFHFGDFVQNLRSHVFHncQDNVTMLEGTVNSLLEEGpgfsERAYGVEYTEAEKYDvpe 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 272 -----------------TKELHAPLTVVADGLFSKFRKNLISNKVSVS--SHFVGFIMKDAPQFKANFAELVLVDPSPVL 332
Cdd:PTZ00367 186 npfredppsanpsattvRKVATAPLVVMCDGGMSKFKSRYQHYTPASEnhSHFVGLVLKNVRLPKEQHGTVFLGKTGPIL 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 333 IYQISPSETRVLVDIRGELPRNLRE---YMTEQIYPQIPDHLKESFLEACQNA-RLRTMPASFLPPSSVNKRGVLLLGDA 408
Cdd:PTZ00367 266 SYRLDDNELRVLVDYNKPTLPSLEEqseWLIEDVAPHLPENMRESFIRASKDTkRIRSMPNARYPPAFPSIKGYVGIGDH 345

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 409 YNLRHPLTGGGMTVALKDIKIWRQLLKDIP-----DLYDDAAI---FQAKKSFFWSRKRSHSFVVNVLAQALYELFSAtd 480
Cdd:PTZ00367 346 ANQRHPLTGGGMTCCFSDCIRLAKSLTGIKslrsiDQNEMAEIedaIQAAILSYARNRKTHASTINILSWALYSVFSS-- 423

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 481 dslRQLRKACFLYFKLGGECLTGPVGLLSILSPDPLLLIRHFFSVAVYA--------------------TYFCFKSEPWA 540
Cdd:PTZ00367 424 ---PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGvlnlimetgaysifgkqlssFEKLTNVASFF 500

                        490       500
                 ....*....|....*....|....*..
gi 149066329 541 TKPRALFSSGAILYKACSIIFPLIYSE 567
Cdd:PTZ00367 501 VDPERIKHALYLLGAATTIAAPLAKSE 527
PLN02985 PLN02985
squalene monooxygenase
 124-527 2.20e-92

squalene monooxygenase


Pssm-ID: 178566 [Multi-domain]  Cd Length: 514  Bit Score: 292.96  E-value: 2.20e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 124 EVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGYVIHdcESRS 203
Cdd:PLN02985  45 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY--KDGK 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 204 EVQIPYPVSENN--QVQSGVAFHHGKFIMSLRKAAMAEPNVKFIEGVVLRLLEEDDAVIGVQYKDKETGDTKELhAPLTV 281
Cdd:PLN02985 123 EAVAPFPVDNNNfpYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAL-APLTV 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 282 VADGLFSKFRKNLISNKVSVSSHFVGFIMKDAPQFKANFAELVLVDPSPVLIYQISPSETRVLVDIrgeLPRN------- 354
Cdd:PLN02985 202 VCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEV---LPDNipsiang 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 355 -LREYMTEQIYPQIPDHLKESFLEAC-QNARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLTGGGMTVALKDIKIWRQ 432
Cdd:PLN02985 279 eMSTFVKNTIAPQVPPKLRKIFLKGIdEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRR 358

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 433 LLKDIPDLYDDAAIFQAKKSFFWSRKrSHSFVVNVLAQALYE-LFSATDDSLRQLRKACFLYFKLGGECLTGPVGLLSIL 511
Cdd:PLN02985 359 LLQPLSNLGNANKVSEVIKSFYDIRK-PMSATVNTLGNAFSQvLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGM 437

                        410
                 ....*....|....*.
gi 149066329 512 SPDPLLLIRHFFSVAV 527
Cdd:PLN02985 438 NPRPLSLIYHLCAITL 453
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
 121-489 2.39e-23

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 101.17  E-value: 2.39e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 121 TDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLnAHHIHGYVIHDCE 200
Cdd:COG0654    2 MRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIALSPRSLELLRRLGLWDRLLAR-GAPIRGIRVRDGS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 201 SRSEV-QIPYPVSennQVQSGVAFHHGKFIMSLRKAAmAEPNVKFIEGVVLRLLEEDDAVIGVQYKDKETgdtkeLHAPL 279
Cdd:COG0654   81 DGRVLaRFDAAET---GLPAGLVVPRADLERALLEAA-RALGVELRFGTEVTGLEQDADGVTVTLADGRT-----LRADL 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 280 TVVADGLFSKFRKnlisnkvsvsSHFVGFIMKDAPQfkanfaelvlvdpspvliyqispseTRVLVDIRGELprnlreym 359
Cdd:COG0654  152 VVGADGARSAVRR----------LLGIGFTGRDYPQ-------------------------RALWAGVRTEL-------- 188

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 360 tEQIYPQIPDHLKEsFLEAcqnARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLTGGGMTVALKDIKIWRQLLKDIPD 439
Cdd:COG0654  189 -RARLAAAGPRLGE-LLEL---SPRSAFPLRRRRAERWRRGRVVLLGDAAHTMHPLGGQGANLALRDAAALAWKLAAALR 263

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 149066329 440 LYDDAAIFQAkksFFWSRKRSHSFVVNvLAQALYELFSATDDSLRQLRKA 489
Cdd:COG0654  264 GRDDEAALAR---YERERRPRAARVQR-AADALGRLFHPDSPPLRLLRNA 309
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
134-425 1.09e-19

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 89.26  E-value: 1.09e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 134 GSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVEslnaHHIHGYVIHDCESRSeVQIPYPVSE 213
Cdd:COG0644    5 GSAAARRLARAGLSVLLLEKGSFPGDKICGGGLLPRALEELEPLGLDEPLE----RPVRGARFYSPGGKS-VELPPGRGG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 214 NNQVQSgvafhhGKFIMSLRKAAmAEPNVKFIEGV-VLRLLEEDDAVIgVqykdkETGDTKELHAPLTVVADGLFSKFRK 292
Cdd:COG0644   80 GYVVDR------ARFDRWLAEQA-EEAGAEVRTGTrVTDVLRDDGRVV-V-----RTGDGEEIRADYVVDADGARSLLAR 146

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 293 NLISNKVSVSSHFVGFIMKdapqfkanfaELVLVDPSPvliyqiSPSETRVLVDIRGELPRnlreymteqiypqipdhlK 372
Cdd:COG0644  147 KLGLKRRSDEPQDYALAIK----------EHWELPPLE------GVDPGAVEFFFGEGAPG------------------G 192

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 149066329 373 ESFLEACQNARLR-TMPASFLPPSSVnKRGVLLLGDAYNLRHPLTGGGMTVALK 425
Cdd:COG0644  193 YGWVFPLGDGRVSvGIPLGGPRPRLV-GDGVLLVGDAAGFVDPLTGEGIHLAMK 245
PRK07045 PRK07045
putative monooxygenase; Reviewed
 124-426 6.85e-15

putative monooxygenase; Reviewed


Pssm-ID: 136171 [Multi-domain]  Cd Length: 388  Bit Score: 76.48  E-value: 6.85e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 124 EVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGY-VIHDCEsr 202
Cdd:PRK07045   7 DVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMrLYHDKE-- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 203 sevqipyPVSENNQVQSGVAfhhGKFIM----SLRKAAMA----EPNVKFIEGVVLRLLE--EDDAVIGVQYKDKETgdt 272
Cdd:PRK07045  85 -------LIASLDYRSASAL---GYFILipceQLRRLLLAkldgLPNVRLRFETSIERIErdADGTVTSVTLSDGER--- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 273 kelHAPLTVV-ADGLFSKFRKNLIsnKVSVSSHFVGfimkdAPQFKANFA--------ELVLVDPSPVL--IYQISPSET 341
Cdd:PRK07045 152 ---VAPTVLVgADGARSMIRDDVL--RMPAERVPYA-----TPMAFGTIAltdsvrecNRLYVDSNQGLayFYPIGDQAT 221

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 342 RVLV-----DIRGELPRNLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPASFLPPSSVNKRGVLLLGDAYNLRHPLT 416
Cdd:PRK07045 222 RLVVsfpadEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPIT 301

                        330
                 ....*....|
gi 149066329 417 GGGMTVALKD 426
Cdd:PRK07045 302 GQGMNLAIED 311
FAD_binding_3 pfam01494
FAD binding domain; This domain is involved in FAD binding in a number of enzymes.
 122-426 6.16e-14

FAD binding domain; This domain is involved in FAD binding in a number of enzymes.


Pssm-ID: 396193 [Multi-domain]  Cd Length: 348  Bit Score: 73.13  E-value: 6.16e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  122 DPEVIIIGSGVLGSALATVLSRDGRTVTVIER---DLKEPdRILGecLQPGGYRVLRELGLGDTVESL-NAHHIHGYVIH 197
Cdd:pfam01494   1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERhatTSVLP-RAHG--LNQRTMELLRQAGLEDRILAEgVPHEGMGLAFY 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  198 DCESRSEVQIP--------YPVSENNQVqsgvafhhgkfimsLRKAAMAEPnVKFIEGVVLRLLEEDDAVIGVQYKDKET 269
Cdd:pfam01494  78 NTRRRADLDFLtspprvtvYPQTELEPI--------------LVEHAEARG-AQVRFGTEVLSLEQDGDGVTAVVRDRRD 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  270 GDTKELHAPLTVVADGLFSKFRKNL---ISNKVSVSSHFVGfIMKDAPQFK-----ANFAELVLVDPSPVLIyqISP--- 338
Cdd:pfam01494 143 GEEYTVRAKYLVGCDGGRSPVRKTLgieFEGFEGVPFGSLD-VLFDAPDLSdpverAFVHYLIYAPHSRGFM--VGPwrs 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  339 --SETRVLVDIRGELPRNLREymteqiyPQIPDHLKESFLEACQNARLrtmPASFLPPSS--VNKR--------GVLLLG 406
Cdd:pfam01494 220 agRERYYVQVPWDEEVEERPE-------EFTDEELKQRLRSIVGIDLA---LVEILWKSIwgVASRvatryrkgRVFLAG 289

                         330       340
                  ....*....|....*....|.
gi 149066329  407 DAYNlRHPLTGG-GMTVALKD 426
Cdd:pfam01494 290 DAAH-IHPPTGGqGLNTAIQD 309
PRK06185 PRK06185
FAD-dependent oxidoreductase;
124-292 8.55e-12

FAD-dependent oxidoreductase;


Pssm-ID: 235729 [Multi-domain]  Cd Length: 407  Bit Score: 67.19  E-value: 8.55e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 124 EVIIIGSGVLGSALATVLSRDGRTVTVIE------RDLKepdrilGECLQPGGYRVLRELGLGDTVESL---NAHHIHGY 194
Cdd:PRK06185   8 DCCIVGGGPAGMMLGLLLARAGVDVTVLEkhadflRDFR------GDTVHPSTLELMDELGLLERFLELphqKVRTLRFE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 195 vIHDCESR----SEVQIPYP-VSENNQVQsgvafhhgkFIMSLRKAAMAEPNVKFIEGV-VLRLLEEDDAVIGVQYKDke 268
Cdd:PRK06185  82 -IGGRTVTladfSRLPTPYPyIAMMPQWD---------FLDFLAEEASAYPNFTLRMGAeVTGLIEEGGRVTGVRART-- 149

                        170       180
                 ....*....|....*....|....
gi 149066329 269 TGDTKELHAPLTVVADGLFSKFRK 292
Cdd:PRK06185 150 PDGPGEIRADLVVGADGRHSRVRA 173
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
119-306 1.86e-10

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 63.13  E-value: 1.86e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 119 SVTDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLKepdriLGEC-----LQPGGYRVLRELGLGDTVESLnAHHIHG 193
Cdd:PRK08163   1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE-----IGEIgagiqLGPNAFSALDALGVGEAARQR-AVFTDH 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 194 YVIHDCESRSEV-QIPypvsennqvqSGVAF-----------HHGKFIMSLRKAAMAEPNVKFIEGVVLRLLEEDDAviG 261
Cdd:PRK08163  75 LTMMDAVDAEEVvRIP----------TGQAFrarfgnpyaviHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD--G 142

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 149066329 262 VQYKDKetgDTKELHAPLTVVADGLFSKFRKNLISNKVSVSSHFV 306
Cdd:PRK08163 143 VTVFDQ---QGNRWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVV 184
PRK06847 PRK06847
hypothetical protein; Provisional
 125-292 9.50e-09

hypothetical protein; Provisional


Pssm-ID: 235874 [Multi-domain]  Cd Length: 375  Bit Score: 57.58  E-value: 9.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 125 VIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTV-------ESLNAHHIHGYVIH 197
Cdd:PRK06847   7 VLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECleagfgfDGVDLFDPDGTLLA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 198 dcesrsevQIPYPVSENNQVQSGV-----AFHHgkfImsLRKAAMAEpnvkfieGVVLRL------LEEDDAVIGVQYKD 266
Cdd:PRK06847  87 --------ELPTPRLAGDDLPGGGgimrpALAR---I--LADAARAA-------GADVRLgttvtaIEQDDDGVTVTFSD 146

                        170       180
                 ....*....|....*....|....*.
gi 149066329 267 KETGdtkelHAPLTVVADGLFSKFRK 292
Cdd:PRK06847 147 GTTG-----RYDLVVGADGLYSKVRS 167
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
121-289 2.36e-06

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 49.90  E-value: 2.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 121 TDPEVIIIGSGVLGSALATVLSRDGRTVTVIERD---------------------------------LKEPDRILGE--- 164
Cdd:COG0665    1 ATADVVVIGGGIAGLSTAYHLARRGLDVTVLERGrpgsgasgrnagqlrpglaaladralvrlareaLDLWRELAAElgi 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 165 -CL--QPGGYRVLR-ELGLGDTVESLNAHHIHGYvihDCE--SRSEVQIPYPVSENNQVQSGV------AFHHGKFIMSL 232
Cdd:COG0665   81 dCDfrRTGVLYLARtEAELAALRAEAEALRALGL---PVEllDAAELREREPGLGSPDYAGGLydpddgHVDPAKLVRAL 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 149066329 233 RKAAmAEPNVKFIEGV-VLRLLEEDDAVIGVqykdkETGDTkELHAPLTVVADGLFSK 289
Cdd:COG0665  158 ARAA-RAAGVRIREGTpVTGLEREGGRVTGV-----RTERG-TVRADAVVLAAGAWSA 208
PRK09126 PRK09126
FAD-dependent hydroxylase;
125-294 6.98e-06

FAD-dependent hydroxylase;


Pssm-ID: 236385 [Multi-domain]  Cd Length: 392  Bit Score: 48.40  E-value: 6.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 125 VIIIGSGVLGSALATVLSRDGRTVTVIERD----LKEPD----RIlgeCLQPGGYRVLRELGLGDtveSLNAHHI---HG 193
Cdd:PRK09126   6 IVVVGAGPAGLSFARSLAGSGLKVTLIERQplaaLADPAfdgrEI---ALTHASREILQRLGAWD---RIPEDEIsplRD 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 194 YVIHDCESRSEVQIPypvSENNQVQS-G--VAFHHgkfimsLRKAAMAE----PNVKFIEGVVLRLLEEDDAVIGVQYKD 266
Cdd:PRK09126  80 AKVLNGRSPFALTFD---ARGRGADAlGylVPNHL------IRRAAYEAvsqqDGIELLTGTRVTAVRTDDDGAQVTLAN 150

                        170       180
                 ....*....|....*....|....*...
gi 149066329 267 KETgdtkeLHAPLTVVADGLFSKFRKNL 294
Cdd:PRK09126 151 GRR-----LTARLLVAADSRFSATRRQL 173
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
 124-375 1.09e-05

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 47.78  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  124 EVIIIGSGVLGSALATVLSRDGRTVTVIERDL--------------------KEPDRILGECL----------------- 166
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDdpgsgasgrnaglihpglryLEPSELARLALealdlweeleeelgidc 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  167 ---QPGGYRVLREL---GLGDTVESLNAHHIHGYVIhdceSRSEVQIPYPVSENNQ----VQSGVAFHHGKFIMSLRKAA 236
Cdd:pfam01266  81 gfrRCGVLVLARDEeeeALEKLLAALRRLGVPAELL----DAEELRELEPLLPGLRgglfYPDGGHVDPARLLRALARAA 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  237 MAEpNVKFIEGVVLRLLEEDDAVIGVQykdkETGDTKELhapltVVADGLFSKF-RKNLISNKVSVSSHFVgFIMKDAPQ 315
Cdd:pfam01266 157 EAL-GVRIIEGTEVTGIEEEGGVWGVV----TTGEADAV-----VNAAGAWADLlALPGLRLPVRPVRGQV-LVLEPLPE 225

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329  316 FKANFAELVLVDPSPVlIYQISPSETRVLVDIRGELPRNLREYMTEQIYPQIPDHLKESF 375
Cdd:pfam01266 226 ALLILPVPITVDPGRG-VYLRPRADGRLLLGGTDEEDGFDDPTPDPEEIEELLEAARRLF 284
mhpA PRK06183
bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;
113-285 1.43e-05

bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase;


Pssm-ID: 235727 [Multi-domain]  Cd Length: 500  Bit Score: 47.59  E-value: 1.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 113 TSVSTSSVTDPEVIIIGSGVLGSALATVLSRDGRTVTVIERdlkEPD-----R---ILGECLqpggyRVLRELGLGDTVe 184
Cdd:PRK06183   1 MAAQHPDAHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLER---WPTlydlpRavgIDDEAL-----RVLQAIGLADEV- 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 185 slNAHHI--HGYVIHDCESRSEVQIPYP-VSENNQVQSgVAFHHGKFIMSLRKAAMAEPNVKFIEGV-VLRLLEEDDAVI 260
Cdd:PRK06183  72 --LPHTTpnHGMRFLDAKGRCLAEIARPsTGEFGWPRR-NAFHQPLLEAVLRAGLARFPHVRVRFGHeVTALTQDDDGVT 148

                        170       180
                 ....*....|....*....|....*
gi 149066329 261 gVQYKDkETGDTKELHAPLTVVADG 285
Cdd:PRK06183 149 -VTLTD-ADGQRETVRARYVVGCDG 171
TrkA COG0569
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ...
 125-182 3.80e-05

Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 440335 [Multi-domain]  Cd Length: 296  Bit Score: 45.83  E-value: 3.80e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 149066329 125 VIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDR--------ILGECLQPggyRVLRELGLGDT 182
Cdd:COG0569   98 VIIIGAGRVGRSLARELEEEGHDVVVIDKDPERVERlaeedvlvIVGDATDE---EVLEEAGIEDA 160
ubiF PRK08020
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
 124-292 5.98e-05

2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed


Pssm-ID: 181199 [Multi-domain]  Cd Length: 391  Bit Score: 45.74  E-value: 5.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 124 EVIIIGSGVLGSALATVLSRDGRTVTVIERDL-------KEPD-RIlgECLQPGGYRVLRELGLGDTVESL--------- 186
Cdd:PRK08020   7 DIAIVGGGMVGAALALGLAQHGFSVAVLEHAApapfdadSQPDvRI--SAISAASVALLKGLGVWDAVQAMrshpyrrle 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 187 -----NAHhihgyVIHDCESRSEVQIPYPVsENNQVQsgvafhhgkfiMSLRKAAMAEPNVKFIEGVVLRLLEEDDAVIG 261
Cdd:PRK08020  85 tweweTAH-----VVFDAAELKLPELGYMV-ENRVLQ-----------LALWQALEAHPNVTLRCPASLQALQRDDDGWE 147

                        170       180       190
                 ....*....|....*....|....*....|.
gi 149066329 262 VQYKDKEtgdtkELHAPLTVVADGLFSKFRK 292
Cdd:PRK08020 148 LTLADGE-----EIQAKLVIGADGANSQVRQ 173
PRK07608 PRK07608
UbiH/UbiF family hydroxylase;
121-489 8.45e-05

UbiH/UbiF family hydroxylase;


Pssm-ID: 181057 [Multi-domain]  Cd Length: 388  Bit Score: 44.94  E-value: 8.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 121 TDPEVIIIGSGVLGSALATVLSRDGRTVTVIE-RDLKEPD------RILGecLQPGGYRVLRELGLGDT-----VESLNA 188
Cdd:PRK07608   4 MKFDVVVVGGGLVGASLALALAQSGLRVALLApRAPPRPAddawdsRVYA--ISPSSQAFLERLGVWQAldaarLAPVYD 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 189 HHIHGyvihDCESR---SEVQIPYP----VSENNQVQSgvafhhgkfimSLRKAAMAEPNVKFIEGVVLRLLEEDDAVig 261
Cdd:PRK07608  82 MRVFG----DAHARlhfSAYQAGVPqlawIVESSLIER-----------ALWAALRFQPNLTWFPARAQGLEVDPDAA-- 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 262 vqykDKETGDTKELHAPLTVVADGLFSKFRKNLISNKVSVSSHFVGFImkdapqfkANF-AELvlvdPSPVLIYQ-ISPS 339
Cdd:PRK07608 145 ----TLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVV--------ANFkAER----PHRGTAYQwFRDD 208

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 340 ETRVLVdirgELPRNL-------REYMTEQIYPQIPDHLKESFLEACQNA----RLRTMPASF----LPPSSVNKRGVLL 404
Cdd:PRK07608 209 GILALL----PLPDGHvsmvwsaRTAHADELLALSPEALAARVERASGGRlgrlECVTPAAGFplrlQRVDRLVAPRVAL 284

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 405 LGDAYNLRHPLTGGGMTVALKDIKIWRQLLKDIPDLYD--DAAIFQAkksffWSRKRSHS-FVVNVLAQALYELFSATDD 481
Cdd:PRK07608 285 VGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDlgDLRLLRR-----YERARREDiLALQVATDGLQRLFALPGP 359


                 ....*...
gi 149066329 482 SLRQLRKA 489
Cdd:PRK07608 360 LARWLRNA 367
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
119-159 1.36e-04

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 44.37  E-value: 1.36e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 149066329 119 SVTDPEVIIIGSGVLGSALATVLSR-DGRTVTVIErdlKEPD 159
Cdd:COG0579    1 MMEMYDVVIIGAGIVGLALARELSRyEDLKVLVLE---KEDD 39
PRK08773 PRK08773
UbiH/UbiF family hydroxylase;
118-487 1.96e-04

UbiH/UbiF family hydroxylase;


Pssm-ID: 181552 [Multi-domain]  Cd Length: 392  Bit Score: 44.08  E-value: 1.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 118 SSVTDPEVIIIGSGVLGSALATVLSRDGRTVTVIERdlKEPDRILGE-------CLQPGGYRVLRELGLGDTVESLNAHH 190
Cdd:PRK08773   2 SRRSRRDAVIVGGGVVGAACALALADAGLSVALVEG--REPPRWQADqpdlrvyAFAADNAALLDRLGVWPAVRAARAQP 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 191 IHGYVIHDCESRSEVQipYPVSENNQVQSGVAFHHGKFIMSLRkAAMAEPNVKFIEGVVLRLLEEDDAVIGVQYKDKetg 270
Cdd:PRK08773  80 YRRMRVWDAGGGGELG--FDADTLGREQLGWIVENDLLVDRLW-AALHAAGVQLHCPARVVALEQDADRVRLRLDDG--- 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 271 dtKELHAPLTVVADGLFSKFRKnliSNKVSVSSH------FVGFIMKDAPQFKANFAELVLVDPSPVLIYQISPSEtrvl 344
Cdd:PRK08773 154 --RRLEAALAIAADGAASTLRE---LAGLPVSRHdyaqrgVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSS---- 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 345 vdIRGELPRNLREYMTEQIYPQIPDHLKESFLEACQNARLRTMPASF-----LPPSSVNKRgVLLLGDAYNLRHPLTGGG 419
Cdd:PRK08773 225 --IVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFplrrqLVQQYVSGR-VLTLGDAAHVVHPLAGQG 301

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 420 MTVALKDIKIWRQLLKD-IPDLYDDAAIFQAKKsffWSR-KRSHSFVVNVLAQALYELFSATDDSLRQLR 487
Cdd:PRK08773 302 VNLGLRDVAALQQLVRQaHARRADWAAPHRLQR---WARtRRSDNTVAAYGFDAINRVFSNDEMHLTLLR 368
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
127-153 1.58e-03

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 37.13  E-value: 1.58e-03
                          10        20
                  ....*....|....*....|....*..
gi 149066329  127 IIGSGVLGSALATVLSRDGRTVTVIER 153
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEK 27
PRK07233 PRK07233
hypothetical protein; Provisional
 127-184 2.09e-03

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 40.64  E-value: 2.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149066329 127 IIGSGVLGSALATVLSRDGRTVTVIERDlkepDRI--LGECLQPGGYRV-----------------LRELGLGDTVE 184
Cdd:PRK07233   4 IVGGGIAGLAAAYRLAKRGHEVTVFEAD----DQLggLAASFEFGGLPIerfyhhifksdeallelLDELGLEDKLR 76
PRK00711 PRK00711
D-amino acid dehydrogenase;
124-153 2.21e-03

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 40.55  E-value: 2.21e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 149066329 124 EVIIIGSGVLGSALATVLSRDGRTVTVIER 153
Cdd:PRK00711   2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDR 31
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 123-163 2.80e-03

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 40.46  E-value: 2.80e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 149066329 123 PE-VIIIGSGVLGSALATVLSRDGRTVTVIERDlkepDRILG 163
Cdd:COG1249  168 PKsLVVIGGGYIGLEFAQIFARLGSEVTLVERG----DRLLP 205
PRK07588 PRK07588
FAD-binding domain;
125-292 3.14e-03

FAD-binding domain;


Pssm-ID: 169028 [Multi-domain]  Cd Length: 391  Bit Score: 40.10  E-value: 3.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 125 VIIIGSGVLGSALATVLSRDGRTVTVIERDLKepdrilgecLQPGGY---------RVLRELGLGDTVESLnahhihGYV 195
Cdd:PRK07588   3 VAISGAGIAGPTLAYWLRRYGHEPTLIERAPE---------LRTGGYmvdfwgvgyEVAKRMGITDQLREA------GYQ 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 196 IHDCESrsevqipypVSENNQVQSGV---AFH---HGKFImSLRKAAMAEPNVKFIEGVV-------LRLLEEDDAVIGV 262
Cdd:PRK07588  68 IEHVRS---------VDPTGRRKADLnvdSFRrmvGDDFT-SLPRGDLAAAIYTAIDGQVetifddsIATIDEHRDGVRV 137

                        170       180       190
                 ....*....|....*....|....*....|
gi 149066329 263 QYkdketGDTKELHAPLTVVADGLFSKFRK 292
Cdd:PRK07588 138 TF-----ERGTPRDFDLVIGADGLHSHVRR 162
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
 124-154 3.83e-03

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 40.21  E-value: 3.83e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 149066329 124 EVIIIGSGVLGSALATVLSRDGRTVTVIERD 154
Cdd:PRK01747 262 DAAIIGGGIAGAALALALARRGWQVTLYEAD 292
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
 121-184 3.93e-03

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 39.83  E-value: 3.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 121 TDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDlkepDRILGEC--LQPGGYR----------------VLRELGLGDT 182
Cdd:COG1233    2 MMYDVVVIGAGIGGLAAAALLARAGYRVTVLEKN----DTPGGRArtFERPGFRfdvgpsvltmpgvlerLFRELGLEDY 77


                 ..
gi 149066329 183 VE 184
Cdd:COG1233   78 LE 79
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 125-189 4.09e-03

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 36.41  E-value: 4.09e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 149066329  125 VIIIGSGVLGSALATVLSRDGRTVTVIERDlkepDRILGECLQPGGYRV---LRELG----LGDTVESLNAH 189
Cdd:pfam00070   2 VVVVGGGYIGLELAGALARLGSKVTVVERR----DRLLPGFDPEIAKILqekLEKNGieflLNTTVEAIEGN 69
PRK07538 PRK07538
hypothetical protein; Provisional
 125-184 4.54e-03

hypothetical protein; Provisional


Pssm-ID: 236046 [Multi-domain]  Cd Length: 413  Bit Score: 39.49  E-value: 4.54e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149066329 125 VIIIGSGVLGSALATVLSRDGRTVTVIE--RDLKEpdriLGE--CLQPGGYRVLRELGLGDTVE 184
Cdd:PRK07538   3 VLIAGGGIGGLTLALTLHQRGIEVVVFEaaPELRP----LGVgiNLLPHAVRELAELGLLDALD 62
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 123-163 6.01e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 39.39  E-value: 6.01e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 149066329 123 PE-VIIIGSGVLGSALATVLSRDGRTVTVIERdlkePDRILG 163
Cdd:PRK06292 169 PKsLAVIGGGVIGLELGQALSRLGVKVTVFER----GDRILP 206
trkA PRK09496
Trk system potassium transporter TrkA;
125-182 6.71e-03

Trk system potassium transporter TrkA;


Pssm-ID: 236541 [Multi-domain]  Cd Length: 453  Bit Score: 39.34  E-value: 6.71e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149066329 125 VIIIGSGVLGSALATVLSRDGRTVTVIERDlkePDRI--LGECL-------QPGGYRVLRELGLGDT 182
Cdd:PRK09496   3 IIIVGAGQVGYTLAENLSGENNDVTVIDTD---EERLrrLQDRLdvrtvvgNGSSPDVLREAGAEDA 66
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
125-186 7.10e-03

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 38.97  E-value: 7.10e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149066329 125 VIIIGSGVLGSALATVLSRDGRTVTVIERDlkepDRILGECLQPGG----YRVLRELG----LGDTVESL 186
Cdd:COG1251  145 VVVIGGGLIGLEAAAALRKRGLEVTVVERA----PRLLPRQLDEEAgallQRLLEALGvevrLGTGVTEI 210
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
125-190 8.03e-03

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 38.74  E-value: 8.03e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149066329 125 VIIIGSGVLGSALATVLSRDGRTVTVIERDlkepDRILGECLQP----GGYRVLRELG----LGDTVESLNAHH 190
Cdd:PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNA----ASLLASLMPPevssRLQHRLTEMGvhllLKSQLQGLEKTD 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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