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Conserved domains on  [gi|149053978|gb|EDM05795|]
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homeo box B9 (predicted), isoform CRA_a [Rattus norvegicus]

Protein Classification

homeobox domain-containing protein( domain architecture ID 11151457)

homeobox domain-containing protein similar to double homeobox protein that may act as a transcription factor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hox9_act pfam04617
Hox9 activation region; This family constitutes the N termini of the paralogous homeobox ...
 1-172 6.00e-74

Hox9 activation region; This family constitutes the N termini of the paralogous homeobox proteins HoxA9, HoxB9, HoxC9 and HoxD9. The N terminal region is found to act as a transcription activation region. Btg1 and Btg2 - the B-cell translocation gene products - may function as cofactors for Hoxb9-mediated transcription. The Btg proteins modulate Hoxb9 transcriptional activity by recruiting a multiprotein Ccr4-like complex.


:

Pssm-ID: 461369  Cd Length: 182  Bit Score: 223.04  E-value: 6.00e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149053978    1 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYAN-PRQPG-HAEHLDFPSCSFQPKAPVFGASWAPLSPHASGSLPSVY 78
Cdd:pfam04617   1 MSTSGTLSNYYVDSIISHESEDLYAPRFSSGPHVQqARQPSgVADHADFPSCSFQPKSPVFSTSWSPVHPQSSAAVPSVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149053978   79 HPYLQPQGAPAAESRYLRTWLEPAPRAEAAPG-QGQA---AVKAEPLLGAP-GELLKQGTPEYSLETSAGREAVLSNQ-- 151
Cdd:pfam04617  81 HPYVHQPHVPASDGRYVRSWLEPISGSVSFPGlPSTGrhyGIKPEPLLGSKgGECTPLETHTRLLSSDYARGSPAKPTse 160

                         170       180
                  ....*....|....*....|..
gi 149053978  152 RAGYGDNK-ICEGSEDKERPDQ 172
Cdd:pfam04617 161 SSSSSEAKdESEGKEEKPELDP 182
Homeodomain pfam00046
Homeodomain;
186-242 9.33e-28

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 100.65  E-value: 9.33e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 149053978  186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
 
Name Accession Description Interval E-value
Hox9_act pfam04617
Hox9 activation region; This family constitutes the N termini of the paralogous homeobox ...
 1-172 6.00e-74

Hox9 activation region; This family constitutes the N termini of the paralogous homeobox proteins HoxA9, HoxB9, HoxC9 and HoxD9. The N terminal region is found to act as a transcription activation region. Btg1 and Btg2 - the B-cell translocation gene products - may function as cofactors for Hoxb9-mediated transcription. The Btg proteins modulate Hoxb9 transcriptional activity by recruiting a multiprotein Ccr4-like complex.


Pssm-ID: 461369  Cd Length: 182  Bit Score: 223.04  E-value: 6.00e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149053978    1 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYAN-PRQPG-HAEHLDFPSCSFQPKAPVFGASWAPLSPHASGSLPSVY 78
Cdd:pfam04617   1 MSTSGTLSNYYVDSIISHESEDLYAPRFSSGPHVQqARQPSgVADHADFPSCSFQPKSPVFSTSWSPVHPQSSAAVPSVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149053978   79 HPYLQPQGAPAAESRYLRTWLEPAPRAEAAPG-QGQA---AVKAEPLLGAP-GELLKQGTPEYSLETSAGREAVLSNQ-- 151
Cdd:pfam04617  81 HPYVHQPHVPASDGRYVRSWLEPISGSVSFPGlPSTGrhyGIKPEPLLGSKgGECTPLETHTRLLSSDYARGSPAKPTse 160

                         170       180
                  ....*....|....*....|..
gi 149053978  152 RAGYGDNK-ICEGSEDKERPDQ 172
Cdd:pfam04617 161 SSSSSEAKdESEGKEEKPELDP 182
Homeodomain pfam00046
Homeodomain;
186-242 9.33e-28

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 100.65  E-value: 9.33e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 149053978  186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 185-241 2.87e-25

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 94.24  E-value: 2.87e-25
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 149053978   185 SRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMK 241
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 186-244 3.03e-24

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 91.54  E-value: 3.03e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 149053978 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMN 244
Cdd:cd00086    1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
182-250 1.85e-11

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 60.53  E-value: 1.85e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 149053978 182 ARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 250
Cdd:COG5576   48 SSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQ 116
 
Name Accession Description Interval E-value
Hox9_act pfam04617
Hox9 activation region; This family constitutes the N termini of the paralogous homeobox ...
 1-172 6.00e-74

Hox9 activation region; This family constitutes the N termini of the paralogous homeobox proteins HoxA9, HoxB9, HoxC9 and HoxD9. The N terminal region is found to act as a transcription activation region. Btg1 and Btg2 - the B-cell translocation gene products - may function as cofactors for Hoxb9-mediated transcription. The Btg proteins modulate Hoxb9 transcriptional activity by recruiting a multiprotein Ccr4-like complex.


Pssm-ID: 461369  Cd Length: 182  Bit Score: 223.04  E-value: 6.00e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149053978    1 MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYAN-PRQPG-HAEHLDFPSCSFQPKAPVFGASWAPLSPHASGSLPSVY 78
Cdd:pfam04617   1 MSTSGTLSNYYVDSIISHESEDLYAPRFSSGPHVQqARQPSgVADHADFPSCSFQPKSPVFSTSWSPVHPQSSAAVPSVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149053978   79 HPYLQPQGAPAAESRYLRTWLEPAPRAEAAPG-QGQA---AVKAEPLLGAP-GELLKQGTPEYSLETSAGREAVLSNQ-- 151
Cdd:pfam04617  81 HPYVHQPHVPASDGRYVRSWLEPISGSVSFPGlPSTGrhyGIKPEPLLGSKgGECTPLETHTRLLSSDYARGSPAKPTse 160

                         170       180
                  ....*....|....*....|..
gi 149053978  152 RAGYGDNK-ICEGSEDKERPDQ 172
Cdd:pfam04617 161 SSSSSEAKdESEGKEEKPELDP 182
Homeodomain pfam00046
Homeodomain;
186-242 9.33e-28

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 100.65  E-value: 9.33e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 149053978  186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKK 242
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 185-241 2.87e-25

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 94.24  E-value: 2.87e-25
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 149053978   185 SRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMK 241
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 186-244 3.03e-24

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 91.54  E-value: 3.03e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 149053978 186 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMN 244
Cdd:cd00086    1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
182-250 1.85e-11

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 60.53  E-value: 1.85e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 149053978 182 ARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE 250
Cdd:COG5576   48 SSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKVEQ 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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