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Conserved domains on  [gi|149053083|gb|EDM04900|]
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similar to novel protein of unknown function (DUF423) family member (predicted), isoform CRA_e [Rattus norvegicus]

Protein Classification

DUF423 domain-containing protein( domain architecture ID 10515198)

DUF423 domain-containing protein, possibly an integral membrane protein similar to human transmembrane protein 256 and Bacillus subtilis membrane protein YwdK

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF423 pfam04241
Protein of unknown function (DUF423); This family of proteins with unknown function is a ...
 22-59 1.66e-05

Protein of unknown function (DUF423); This family of proteins with unknown function is a possible integral membrane protein from Caenorhabditis elegans. This family of proteins has GO references indicating the protein is involved in nematode larval development and is a positive regulator of growth rate.


:

Pssm-ID: 461234  Cd Length: 86  Bit Score: 39.04  E-value: 1.66e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 149053083  22 LATYGAHGAQfPDAYGKELFDKANKHHFLHSLALLGVP 59
Cdd:pfam04241  1 LGAFGAHGLK-ARPEQLAVFETAVQYQMYHALALLAVA 37
 
Name Accession Description Interval E-value
DUF423 pfam04241
Protein of unknown function (DUF423); This family of proteins with unknown function is a ...
 22-59 1.66e-05

Protein of unknown function (DUF423); This family of proteins with unknown function is a possible integral membrane protein from Caenorhabditis elegans. This family of proteins has GO references indicating the protein is involved in nematode larval development and is a positive regulator of growth rate.


Pssm-ID: 461234  Cd Length: 86  Bit Score: 39.04  E-value: 1.66e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 149053083  22 LATYGAHGAQfPDAYGKELFDKANKHHFLHSLALLGVP 59
Cdd:pfam04241  1 LGAFGAHGLK-ARPEQLAVFETAVQYQMYHALALLAVA 37
 
Name Accession Description Interval E-value
DUF423 pfam04241
Protein of unknown function (DUF423); This family of proteins with unknown function is a ...
 22-59 1.66e-05

Protein of unknown function (DUF423); This family of proteins with unknown function is a possible integral membrane protein from Caenorhabditis elegans. This family of proteins has GO references indicating the protein is involved in nematode larval development and is a positive regulator of growth rate.


Pssm-ID: 461234  Cd Length: 86  Bit Score: 39.04  E-value: 1.66e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 149053083  22 LATYGAHGAQfPDAYGKELFDKANKHHFLHSLALLGVP 59
Cdd:pfam04241  1 LGAFGAHGLK-ARPEQLAVFETAVQYQMYHALALLAVA 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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