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Conserved domains on  [gi|149040726|gb|EDL94683|]
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rCG20208, isoform CRA_e [Rattus norvegicus]

Protein Classification

peroxisomal biogenesis factor 19( domain architecture ID 10519178)

peroxisomal biogenesis factor 19 (Pex19) is necessary for early peroxisomal biogenesis, acting both as a cytosolic chaperone and as an import receptor for peroxisomal membrane proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pex19 pfam04614
Pex19 protein family;
74-293 1.20e-65

Pex19 protein family;


:

Pssm-ID: 461367  Cd Length: 245  Bit Score: 205.63  E-value: 1.20e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726   74 LFDSELASQATAEFEKAMKEL----------AEEEPHLVEQFQKLSEAAGRVGSDASSQQ---------EFTSCLKETLS 134
Cdd:pfam04614   1 LEDEEFAKQLQKEMENLMKELgpdagenaeaAEDFDELLKQFEEAAEAAAAAGSAEASASaagsaagpeSFQDIISETLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726  135 GLAKNATDLQNA-----GMSEEELTKAMEGLGMDEGDGEG---NILPIMQSLMQNLLSKDVLYPSLKEITEKYPEWLQSH 206
Cdd:pfam04614  81 RLKESGDKADAAiesasGNSDDLLAQLLKQLGLGGGGGDGggeDMSKMLLGMMEQLSSKEVLYEPMKELNDKFPEWLEEN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726  207 QESIPPEQFEKYQQQHSVMGKICEQFEAETPTDSEATHRarfEAVLDLMQQLQDLGHPPKELAGEMCSIMQDIPGVPGPT 286
Cdd:pfam04614 161 KEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDR---EEITDLMQELQDLGSPPKELVGDMPPGLPGLPGLPGAN 237


                  ....*..
gi 149040726  287 CDPEVTQ 293
Cdd:pfam04614 238 GGEGCKQ 244
 
Name Accession Description Interval E-value
Pex19 pfam04614
Pex19 protein family;
74-293 1.20e-65

Pex19 protein family;


Pssm-ID: 461367  Cd Length: 245  Bit Score: 205.63  E-value: 1.20e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726   74 LFDSELASQATAEFEKAMKEL----------AEEEPHLVEQFQKLSEAAGRVGSDASSQQ---------EFTSCLKETLS 134
Cdd:pfam04614   1 LEDEEFAKQLQKEMENLMKELgpdagenaeaAEDFDELLKQFEEAAEAAAAAGSAEASASaagsaagpeSFQDIISETLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726  135 GLAKNATDLQNA-----GMSEEELTKAMEGLGMDEGDGEG---NILPIMQSLMQNLLSKDVLYPSLKEITEKYPEWLQSH 206
Cdd:pfam04614  81 RLKESGDKADAAiesasGNSDDLLAQLLKQLGLGGGGGDGggeDMSKMLLGMMEQLSSKEVLYEPMKELNDKFPEWLEEN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726  207 QESIPPEQFEKYQQQHSVMGKICEQFEAETPTDSEATHRarfEAVLDLMQQLQDLGHPPKELAGEMCSIMQDIPGVPGPT 286
Cdd:pfam04614 161 KEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDR---EEITDLMQELQDLGSPPKELVGDMPPGLPGLPGLPGAN 237


                  ....*..
gi 149040726  287 CDPEVTQ 293
Cdd:pfam04614 238 GGEGCKQ 244
 
Name Accession Description Interval E-value
Pex19 pfam04614
Pex19 protein family;
74-293 1.20e-65

Pex19 protein family;


Pssm-ID: 461367  Cd Length: 245  Bit Score: 205.63  E-value: 1.20e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726   74 LFDSELASQATAEFEKAMKEL----------AEEEPHLVEQFQKLSEAAGRVGSDASSQQ---------EFTSCLKETLS 134
Cdd:pfam04614   1 LEDEEFAKQLQKEMENLMKELgpdagenaeaAEDFDELLKQFEEAAEAAAAAGSAEASASaagsaagpeSFQDIISETLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726  135 GLAKNATDLQNA-----GMSEEELTKAMEGLGMDEGDGEG---NILPIMQSLMQNLLSKDVLYPSLKEITEKYPEWLQSH 206
Cdd:pfam04614  81 RLKESGDKADAAiesasGNSDDLLAQLLKQLGLGGGGGDGggeDMSKMLLGMMEQLSSKEVLYEPMKELNDKFPEWLEEN 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149040726  207 QESIPPEQFEKYQQQHSVMGKICEQFEAETPTDSEATHRarfEAVLDLMQQLQDLGHPPKELAGEMCSIMQDIPGVPGPT 286
Cdd:pfam04614 161 KEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDR---EEITDLMQELQDLGSPPKELVGDMPPGLPGLPGLPGAN 237


                  ....*..
gi 149040726  287 CDPEVTQ 293
Cdd:pfam04614 238 GGEGCKQ 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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