NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|148690444|gb|EDL22391|]
View 

mCG17661 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
JUPITER super family cl25291
Microtubule-Associated protein Jupiter; Is a microtubule-associated protein that binds to all ...
 10-104 1.26e-04

Microtubule-Associated protein Jupiter; Is a microtubule-associated protein that binds to all microtubule populations in Drosophila.


The actual alignment was detected with superfamily member pfam17054:

Pssm-ID: 293659  Cd Length: 208  Bit Score: 41.19  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148690444   10 GKSGSRSMKPPGGESSDLFGSPEEGISSSKPNRMASNIFGPTeepKNIPKRTNPPGGKGSGIFDESTPvqtrQRLNPPGG 89
Cdd:pfam17054  16 GKAKKRVLRAPGGGSSDIFGSDMPQTPRNVKNRMASNIFSAE---KDNAVKNNVRQGAHRFYFIGDNP----RRGQKPVD 88

                          90
                  ....*....|....*
gi 148690444   90 KTSDIFGSPVTATAP 104
Cdd:pfam17054  89 SHSRLFGEPTRPITP 103
 
Name Accession Description Interval E-value
JUPITER pfam17054
Microtubule-Associated protein Jupiter; Is a microtubule-associated protein that binds to all ...
 10-104 1.26e-04

Microtubule-Associated protein Jupiter; Is a microtubule-associated protein that binds to all microtubule populations in Drosophila.


Pssm-ID: 293659  Cd Length: 208  Bit Score: 41.19  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148690444   10 GKSGSRSMKPPGGESSDLFGSPEEGISSSKPNRMASNIFGPTeepKNIPKRTNPPGGKGSGIFDESTPvqtrQRLNPPGG 89
Cdd:pfam17054  16 GKAKKRVLRAPGGGSSDIFGSDMPQTPRNVKNRMASNIFSAE---KDNAVKNNVRQGAHRFYFIGDNP----RRGQKPVD 88

                          90
                  ....*....|....*
gi 148690444   90 KTSDIFGSPVTATAP 104
Cdd:pfam17054  89 SHSRLFGEPTRPITP 103
 
Name Accession Description Interval E-value
JUPITER pfam17054
Microtubule-Associated protein Jupiter; Is a microtubule-associated protein that binds to all ...
 10-104 1.26e-04

Microtubule-Associated protein Jupiter; Is a microtubule-associated protein that binds to all microtubule populations in Drosophila.


Pssm-ID: 293659  Cd Length: 208  Bit Score: 41.19  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148690444   10 GKSGSRSMKPPGGESSDLFGSPEEGISSSKPNRMASNIFGPTeepKNIPKRTNPPGGKGSGIFDESTPvqtrQRLNPPGG 89
Cdd:pfam17054  16 GKAKKRVLRAPGGGSSDIFGSDMPQTPRNVKNRMASNIFSAE---KDNAVKNNVRQGAHRFYFIGDNP----RRGQKPVD 88

                          90
                  ....*....|....*
gi 148690444   90 KTSDIFGSPVTATAP 104
Cdd:pfam17054  89 SHSRLFGEPTRPITP 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH