NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|148677362|gb|EDL09309|]
View 

galactosidase, beta 1, isoform CRA_a, partial [Mus musculus]

Protein Classification

beta galactosidase jelly roll domain-containing protein( domain architecture ID 10595578)

beta galactosidase jelly roll domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BetaGal_dom4_5 pfam13364
Beta-galactosidase jelly roll domain; This domain is found in beta galactosidase enzymes. It ...
 245-313 1.65e-07

Beta-galactosidase jelly roll domain; This domain is found in beta galactosidase enzymes. It has a jelly roll fold.


:

Pssm-ID: 463857 [Multi-domain]  Cd Length: 111  Bit Score: 49.17  E-value: 1.65e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148677362  245 FYVGNF-SIPSGIpdlpqDT--FIQFPGWSKG--QVWINGFNLGRYWPTMGPQKTLFVPRNILTTSAPNNITVL 313
Cdd:pfam13364  36 FYRGTFlDIPDGY-----DVslSLTFQGGTAFrvQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVL 104
 
Name Accession Description Interval E-value
BetaGal_dom4_5 pfam13364
Beta-galactosidase jelly roll domain; This domain is found in beta galactosidase enzymes. It ...
 245-313 1.65e-07

Beta-galactosidase jelly roll domain; This domain is found in beta galactosidase enzymes. It has a jelly roll fold.


Pssm-ID: 463857 [Multi-domain]  Cd Length: 111  Bit Score: 49.17  E-value: 1.65e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148677362  245 FYVGNF-SIPSGIpdlpqDT--FIQFPGWSKG--QVWINGFNLGRYWPTMGPQKTLFVPRNILTTSAPNNITVL 313
Cdd:pfam13364  36 FYRGTFlDIPDGY-----DVslSLTFQGGTAFrvQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVL 104
PLN03059 PLN03059
beta-galactosidase; Provisional
 244-287 6.66e-04

beta-galactosidase; Provisional


Pssm-ID: 166698 [Multi-domain]  Cd Length: 840  Bit Score: 41.53  E-value: 6.66e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 148677362 244 TFYVGNFSIPSGIPDLPQDtfiqFPGWSKGQVWINGFNLGRYWP 287
Cdd:PLN03059 621 TWYKTTFDAPGGNDPLALD----MSSMGKGQIWINGQSIGRHWP 660
 
Name Accession Description Interval E-value
BetaGal_dom4_5 pfam13364
Beta-galactosidase jelly roll domain; This domain is found in beta galactosidase enzymes. It ...
 245-313 1.65e-07

Beta-galactosidase jelly roll domain; This domain is found in beta galactosidase enzymes. It has a jelly roll fold.


Pssm-ID: 463857 [Multi-domain]  Cd Length: 111  Bit Score: 49.17  E-value: 1.65e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 148677362  245 FYVGNF-SIPSGIpdlpqDT--FIQFPGWSKG--QVWINGFNLGRYWPTMGPQKTLFVPRNILTTSAPNNITVL 313
Cdd:pfam13364  36 FYRGTFlDIPDGY-----DVslSLTFQGGTAFrvQLWLNGYQLGSYVPHIGPQTTFPVPPGILNYRGDNTLAVL 104
PLN03059 PLN03059
beta-galactosidase; Provisional
 244-287 6.66e-04

beta-galactosidase; Provisional


Pssm-ID: 166698 [Multi-domain]  Cd Length: 840  Bit Score: 41.53  E-value: 6.66e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 148677362 244 TFYVGNFSIPSGIPDLPQDtfiqFPGWSKGQVWINGFNLGRYWP 287
Cdd:PLN03059 621 TWYKTTFDAPGGNDPLALD----MSSMGKGQIWINGQSIGRHWP 660
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH