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Conserved domains on  [gi|148668411|gb|EDL00735|]
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synapsin I, isoform CRA_a [Mus musculus]

Protein Classification

ATP-grasp domain-containing protein; acetate--CoA ligase family protein( domain architecture ID 10566049)

ATP-grasp domain-containing protein may be related to carbamoyl phosphate synthetase and predicted to be involved in the biosynthesis of a ribonucleoside involved in stress response| acetate--CoA ligase family protein similar to ADP-forming acetate--CoA ligase that catalyzes the formation of acetate and ATP from acetyl-CoA by using ADP and phosphate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CPSase_L_D2 super family cl17255
Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase ...
 214-413 2.99e-133

Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.


The actual alignment was detected with superfamily member pfam02750:

Pssm-ID: 473076  Cd Length: 203  Bit Score: 389.80  E-value: 2.99e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  214 NSLHSVYNFCDKPWV---VIRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIAS 290
Cdd:pfam02750   1 NSLESIYNFCDKPWVfaqLIAIFHSLGGEKFPLIEQTFFPNHKEMLTAPNFPVVIKIGHAHAGMGKIKVENHHDFQDIAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  291 VVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVE 370
Cdd:pfam02750  81 VVALAKTYATAEAFIDSKYDIRIQKIGNNYKAYMRTSISGNWKANTGSAMLEQIAMSDRYKLWVDSCSEMFGGLDICAVK 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 148668411  371 ALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQ 413
Cdd:pfam02750 161 AVHGKDGKDYIFEVMDCSMPLIGEHQEEDKQLIADLVISKMNQ 203
Synapsin pfam02078
Synapsin, N-terminal domain; This family is structurally related to the PreATP-grasp domain.
 115-212 9.01e-61

Synapsin, N-terminal domain; This family is structurally related to the PreATP-grasp domain.


:

Pssm-ID: 460438  Cd Length: 97  Bit Score: 197.87  E-value: 9.01e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  115 VLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFsmAR 194
Cdd:pfam02078   2 TLLVIDDQHTDWSKYFRGKKIHGDYDIRVEQAEFSELNLTAYADGGCVVDMQVIRNGTKVVRSFRPDFVLVRQHAR--DA 79

                          90
                  ....*....|....*...
gi 148668411  195 NGDYRSLVIGLQYAGIPS 212
Cdd:pfam02078  80 GEDYRNLLLGLQYGGVPS 97
Synapsin_N super family cl11206
Synapsin N-terminal; This highly conserved domain of synapsin proteins has a serine at ...
 1-27 4.42e-12

Synapsin N-terminal; This highly conserved domain of synapsin proteins has a serine at position 9 or 10 which is a phosphorylation site. The domain appears to be the part of the molecule that binds to calmodulin.


The actual alignment was detected with superfamily member pfam10581:

Pssm-ID: 463155  Cd Length: 32  Bit Score: 60.58  E-value: 4.42e-12
                          10        20
                  ....*....|....*....|....*..
gi 148668411    1 MNYLRRRLSDSNFMANLPNGYMTDLQR 27
Cdd:pfam10581   1 MNYLRRRLSDSNFMSNLPNGYMSDLQR 27
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 491-667 6.99e-07

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 52.68  E-value: 6.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 491 SGLGPPAGSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPA 570
Cdd:PRK07764 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA 677

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 571 PTKASGAPPGGQQRQGPpqkppgpagpTRQASQAGPGPRTGPP--TTQQPRPSGPGPAGRPAKPQLA---QKPSQDVPPP 645
Cdd:PRK07764 678 PAAPPPAPAPAAPAAPA----------GAAPAQPAPAPAATPPagQADDPAAQPPQAAQGASAPSPAaddPVPLPPEPDD 747

                        170       180
                 ....*....|....*....|..
gi 148668411 646 ITAAAGGPPHPQLKASPSQAQP 667
Cdd:PRK07764 748 PPDPAGAPAQPPPPPAPAPAAA 769
 
Name Accession Description Interval E-value
Synapsin_C pfam02750
Synapsin, ATP binding domain; Ca dependent ATP binding in this ATP grasp fold. Function ...
 214-413 2.99e-133

Synapsin, ATP binding domain; Ca dependent ATP binding in this ATP grasp fold. Function unknown.


Pssm-ID: 308403  Cd Length: 203  Bit Score: 389.80  E-value: 2.99e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  214 NSLHSVYNFCDKPWV---VIRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIAS 290
Cdd:pfam02750   1 NSLESIYNFCDKPWVfaqLIAIFHSLGGEKFPLIEQTFFPNHKEMLTAPNFPVVIKIGHAHAGMGKIKVENHHDFQDIAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  291 VVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVE 370
Cdd:pfam02750  81 VVALAKTYATAEAFIDSKYDIRIQKIGNNYKAYMRTSISGNWKANTGSAMLEQIAMSDRYKLWVDSCSEMFGGLDICAVK 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 148668411  371 ALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQ 413
Cdd:pfam02750 161 AVHGKDGKDYIFEVMDCSMPLIGEHQEEDKQLIADLVISKMNQ 203
Synapsin pfam02078
Synapsin, N-terminal domain; This family is structurally related to the PreATP-grasp domain.
 115-212 9.01e-61

Synapsin, N-terminal domain; This family is structurally related to the PreATP-grasp domain.


Pssm-ID: 460438  Cd Length: 97  Bit Score: 197.87  E-value: 9.01e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  115 VLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFsmAR 194
Cdd:pfam02078   2 TLLVIDDQHTDWSKYFRGKKIHGDYDIRVEQAEFSELNLTAYADGGCVVDMQVIRNGTKVVRSFRPDFVLVRQHAR--DA 79

                          90
                  ....*....|....*...
gi 148668411  195 NGDYRSLVIGLQYAGIPS 212
Cdd:pfam02078  80 GEDYRNLLLGLQYGGVPS 97
Synapsin_N pfam10581
Synapsin N-terminal; This highly conserved domain of synapsin proteins has a serine at ...
 1-27 4.42e-12

Synapsin N-terminal; This highly conserved domain of synapsin proteins has a serine at position 9 or 10 which is a phosphorylation site. The domain appears to be the part of the molecule that binds to calmodulin.


Pssm-ID: 463155  Cd Length: 32  Bit Score: 60.58  E-value: 4.42e-12
                          10        20
                  ....*....|....*....|....*..
gi 148668411    1 MNYLRRRLSDSNFMANLPNGYMTDLQR 27
Cdd:pfam10581   1 MNYLRRRLSDSNFMSNLPNGYMSDLQR 27
LysX COG0189
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport ...
 161-417 3.57e-09

Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport and metabolism, Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis, Secondary metabolites biosynthesis, transport and catabolism]; Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 439959 [Multi-domain]  Cd Length: 289  Bit Score: 58.41  E-value: 3.57e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 161 FSVDMEVLRNGVKVVRSLKPDFVLIRQ----HAFSMARNgdyrslvigLQYAGIPSVNSLHSVYNFCDKpWVVIRLHKKL 236
Cdd:COG0189   38 LTLDLGRAPELYRGEDLSEFDAVLPRIdppfYGLALLRQ---------LEAAGVPVVNDPEAIRRARDK-LFTLQLLARA 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 237 GtEEFP--LIdqTFYPNH-KEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQD-IASVVALTKTYATAEPFIDAK--YD 310
Cdd:COG0189  108 G-IPVPptLV--TRDPDDlRAFLEELGGPVVLKPLDGSGGRGVFLVEDEDALESiLEALTELGSEPVLVQEFIPEEdgRD 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 311 VRVqkI---GQNYKAYMRTSVSGNWKTNT---GSAmlEQIAMSDRYKLWVDTCSEIFgGLDICAVEALHGKDGRdHIIEV 384
Cdd:COG0189  185 IRV--LvvgGEPVAAIRRIPAEGEFRTNLargGRA--EPVELTDEERELALRAAPAL-GLDFAGVDLIEDDDGP-LVLEV 258

                        250       260       270
                 ....*....|....*....|....*....|...
gi 148668411 385 vgSSMPLIGDHQDEDKQLIVELVVNKMTQALPR 417
Cdd:COG0189  259 --NVTPGFRGLERATGVDIAEAIADYLEARAAR 289
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 491-667 6.99e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 52.68  E-value: 6.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 491 SGLGPPAGSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPA 570
Cdd:PRK07764 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA 677

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 571 PTKASGAPPGGQQRQGPpqkppgpagpTRQASQAGPGPRTGPP--TTQQPRPSGPGPAGRPAKPQLA---QKPSQDVPPP 645
Cdd:PRK07764 678 PAAPPPAPAPAAPAAPA----------GAAPAQPAPAPAATPPagQADDPAAQPPQAAQGASAPSPAaddPVPLPPEPDD 747

                        170       180
                 ....*....|....*....|..
gi 148668411 646 ITAAAGGPPHPQLKASPSQAQP 667
Cdd:PRK07764 748 PPDPAGAPAQPPPPPAPAPAAA 769
rimK_fam TIGR00768
alpha-L-glutamate ligase, RimK family; This family, related to bacterial glutathione ...
 179-393 1.73e-04

alpha-L-glutamate ligase, RimK family; This family, related to bacterial glutathione synthetases, contains at least three different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).


Pssm-ID: 273261 [Multi-domain]  Cd Length: 276  Bit Score: 43.87  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  179 KPDFVLIR----QHAFSMARNgdyrslvigLQYAGIPSVNSLHSVYNFCDKPWVvirlHKKLGTEEFPLIDQTFYPNHKE 254
Cdd:TIGR00768  48 ELDVVIVRivsmFRGLAVLRY---------LESLGVPVINSSDAILNAGDKFLS----HQLLAKAGIPLPRTGLAGSPEE 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  255 ---MLSSTTYPVVVKMGHAHSGMGKVKVDnqhDFQDIASVV-ALTKTYATAEPFIDAKY-------DVRVQKIGQNYKAY 323
Cdd:TIGR00768 115 alkLIEEIGFPVVLKPVFGSWGRGVSLAR---DRQAAESLLeHFEQLNGPQNLFLVQEYikkpggrDIRVFVVGDEVVAA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  324 MRTSVSGNWKTNT---GSAM-------LEQIAMSdryklwvdtCSEIFgGLDICAVEALHGKDGrdHIIEVVGSSMPLIG 393
Cdd:TIGR00768 192 IYRITSGHWRSNLargGKAEpcslteeIEELAIK---------AAKAL-GLDVAGVDLLESEDG--LLVNEVNANPEFKN 259
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 552-667 2.52e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 41.17  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  552 QRQAGAPQATRQASISgPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPS-----GPGPA 626
Cdd:pfam09770 202 AMRAQAKKPAQQPAPA-PAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQspqpdPAQPS 280

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 148668411  627 GRPAKPQLAQKPSQDVPPPI----------TAAAGGPPHPQLKASPSQAQP 667
Cdd:pfam09770 281 IQPQAQQFHQQPPPVPVQPTqilqnpnrlsAARVGYPQNPQPGVQPAPAHQ 331
 
Name Accession Description Interval E-value
Synapsin_C pfam02750
Synapsin, ATP binding domain; Ca dependent ATP binding in this ATP grasp fold. Function ...
 214-413 2.99e-133

Synapsin, ATP binding domain; Ca dependent ATP binding in this ATP grasp fold. Function unknown.


Pssm-ID: 308403  Cd Length: 203  Bit Score: 389.80  E-value: 2.99e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  214 NSLHSVYNFCDKPWV---VIRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIAS 290
Cdd:pfam02750   1 NSLESIYNFCDKPWVfaqLIAIFHSLGGEKFPLIEQTFFPNHKEMLTAPNFPVVIKIGHAHAGMGKIKVENHHDFQDIAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  291 VVALTKTYATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVE 370
Cdd:pfam02750  81 VVALAKTYATAEAFIDSKYDIRIQKIGNNYKAYMRTSISGNWKANTGSAMLEQIAMSDRYKLWVDSCSEMFGGLDICAVK 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 148668411  371 ALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQ 413
Cdd:pfam02750 161 AVHGKDGKDYIFEVMDCSMPLIGEHQEEDKQLIADLVISKMNQ 203
Synapsin pfam02078
Synapsin, N-terminal domain; This family is structurally related to the PreATP-grasp domain.
 115-212 9.01e-61

Synapsin, N-terminal domain; This family is structurally related to the PreATP-grasp domain.


Pssm-ID: 460438  Cd Length: 97  Bit Score: 197.87  E-value: 9.01e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  115 VLLVIDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFsmAR 194
Cdd:pfam02078   2 TLLVIDDQHTDWSKYFRGKKIHGDYDIRVEQAEFSELNLTAYADGGCVVDMQVIRNGTKVVRSFRPDFVLVRQHAR--DA 79

                          90
                  ....*....|....*...
gi 148668411  195 NGDYRSLVIGLQYAGIPS 212
Cdd:pfam02078  80 GEDYRNLLLGLQYGGVPS 97
Synapsin_N pfam10581
Synapsin N-terminal; This highly conserved domain of synapsin proteins has a serine at ...
 1-27 4.42e-12

Synapsin N-terminal; This highly conserved domain of synapsin proteins has a serine at position 9 or 10 which is a phosphorylation site. The domain appears to be the part of the molecule that binds to calmodulin.


Pssm-ID: 463155  Cd Length: 32  Bit Score: 60.58  E-value: 4.42e-12
                          10        20
                  ....*....|....*....|....*..
gi 148668411    1 MNYLRRRLSDSNFMANLPNGYMTDLQR 27
Cdd:pfam10581   1 MNYLRRRLSDSNFMSNLPNGYMSDLQR 27
LysX COG0189
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport ...
 161-417 3.57e-09

Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport and metabolism, Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis, Secondary metabolites biosynthesis, transport and catabolism]; Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 439959 [Multi-domain]  Cd Length: 289  Bit Score: 58.41  E-value: 3.57e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 161 FSVDMEVLRNGVKVVRSLKPDFVLIRQ----HAFSMARNgdyrslvigLQYAGIPSVNSLHSVYNFCDKpWVVIRLHKKL 236
Cdd:COG0189   38 LTLDLGRAPELYRGEDLSEFDAVLPRIdppfYGLALLRQ---------LEAAGVPVVNDPEAIRRARDK-LFTLQLLARA 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 237 GtEEFP--LIdqTFYPNH-KEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQD-IASVVALTKTYATAEPFIDAK--YD 310
Cdd:COG0189  108 G-IPVPptLV--TRDPDDlRAFLEELGGPVVLKPLDGSGGRGVFLVEDEDALESiLEALTELGSEPVLVQEFIPEEdgRD 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 311 VRVqkI---GQNYKAYMRTSVSGNWKTNT---GSAmlEQIAMSDRYKLWVDTCSEIFgGLDICAVEALHGKDGRdHIIEV 384
Cdd:COG0189  185 IRV--LvvgGEPVAAIRRIPAEGEFRTNLargGRA--EPVELTDEERELALRAAPAL-GLDFAGVDLIEDDDGP-LVLEV 258

                        250       260       270
                 ....*....|....*....|....*....|...
gi 148668411 385 vgSSMPLIGDHQDEDKQLIVELVVNKMTQALPR 417
Cdd:COG0189  259 --NVTPGFRGLERATGVDIAEAIADYLEARAAR 289
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 491-667 6.99e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 52.68  E-value: 6.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 491 SGLGPPAGSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPA 570
Cdd:PRK07764 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA 677

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 571 PTKASGAPPGGQQRQGPpqkppgpagpTRQASQAGPGPRTGPP--TTQQPRPSGPGPAGRPAKPQLA---QKPSQDVPPP 645
Cdd:PRK07764 678 PAAPPPAPAPAAPAAPA----------GAAPAQPAPAPAATPPagQADDPAAQPPQAAQGASAPSPAaddPVPLPPEPDD 747

                        170       180
                 ....*....|....*....|..
gi 148668411 646 ITAAAGGPPHPQLKASPSQAQP 667
Cdd:PRK07764 748 PPDPAGAPAQPPPPPAPAPAAA 769
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
495-665 8.65e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 52.19  E-value: 8.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 495 PPAGSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSrpvaggpgappAARPPASPSPQRQAGAPQATRqASISGPAPTKA 574
Cdd:PRK12323 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRS-----------PAPEALAAARQASARGPGGAP-APAPAPAAAPA 459

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 575 SGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPrPSGPGPAGRPAKPQLAQKPSQDVPPPITAAAgGPP 654
Cdd:PRK12323 460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP-PEFASPAPAQPDAAPAGWVAESIPDPATADP-DDA 537

                        170
                 ....*....|.
gi 148668411 655 HPQLKASPSQA 665
Cdd:PRK12323 538 FETLAPAPAAA 548
PHA03247 PHA03247
large tegument protein UL36; Provisional
 495-667 9.50e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 9.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  495 PPAG--SPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPAPT 572
Cdd:PHA03247 2771 PPAApaAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL 2850

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  573 KASGA-PPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAKPQLAQKPSQDVPPPITAAAG 651
Cdd:PHA03247 2851 PLGGSvAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930

                         170
                  ....*....|....*.
gi 148668411  652 GPPHPQLKaSPSQAQP 667
Cdd:PHA03247 2931 PPPPPPPR-PQPPLAP 2945
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
512-662 1.65e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 51.42  E-value: 1.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 512 PQQSASQATPVTQGQGRQSRPVAGGpgappaarppaspspQRQAGAPQATRQASISGPAPTKASGAPPGGQQRQGPPQKP 591
Cdd:PRK12323 365 PGQSGGGAGPATAAAAPVAQPAPAA---------------AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA 429

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 148668411 592 PGPAGPTRQASQAGPGPRTGPPTTQqprPSGPGPAGRPAKPQLAQKPSQDVPPPITAAAGGPPHPQLKASP 662
Cdd:PRK12323 430 PEALAAARQASARGPGGAPAPAPAP---AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497
PHA03247 PHA03247
large tegument protein UL36; Provisional
 497-665 1.77e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 1.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  497 AGSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATrqasiSGPAPTKASG 576
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT-----AGPPAPAPPA 2773

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  577 APPGGQQRqgppqkppgpaGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAKPQLAQKPSQDVPPPITAAAGGPPHP 656
Cdd:PHA03247 2774 APAAGPPR-----------RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP 2842


                  ....*....
gi 148668411  657 QLKASPSQA 665
Cdd:PHA03247 2843 PGPPPPSLP 2851
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 555-667 1.48e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 1.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 555 AGAPQATRQASISGPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAKPQL 634
Cdd:PRK07764 405 APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484

                         90       100       110
                 ....*....|....*....|....*....|...
gi 148668411 635 AQKPSQDVPPPITAAAGGPPHPQLKASPSQAQP 667
Cdd:PRK07764 485 PAAPAPAAAPAAPAAPAAPAGADDAATLRERWP 517
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 509-667 1.52e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 509 TAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPAPTKASGAPP-------GG 581
Cdd:PRK07764 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVavpdasdGG 666

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 582 QQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAKP--QLAQKPSQDVPPPITAAAGGPPHPQLK 659
Cdd:PRK07764 667 DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPaaQPPQAAQGASAPSPAADDPVPLPPEPD 746


                 ....*...
gi 148668411 660 ASPSQAQP 667
Cdd:PRK07764 747 DPPDPAGA 754
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
491-665 1.60e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.84  E-value: 1.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 491 SGLGPPAGSP--LPQRLPSP-----TAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGapqATRQ 563
Cdd:PRK07003 364 GGGAPGGGVParVAGAVPAPgaraaAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATA---DRGD 440

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 564 ASISGPAPTKASGAPPGgqqRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRP-------SGPGPAGRPAKPQLAQ 636
Cdd:PRK07003 441 DAADGDAPVPAKANARA---SADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPraaapsaATPAAVPDARAPAAAS 517

                        170       180
                 ....*....|....*....|....*....
gi 148668411 637 KPSQDVPPPITAAAGGPPHPQLKASPSQA 665
Cdd:PRK07003 518 REDAPAAAAPPAPEARPPTPAAAAPAARA 546
rimK_fam TIGR00768
alpha-L-glutamate ligase, RimK family; This family, related to bacterial glutathione ...
 179-393 1.73e-04

alpha-L-glutamate ligase, RimK family; This family, related to bacterial glutathione synthetases, contains at least three different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).


Pssm-ID: 273261 [Multi-domain]  Cd Length: 276  Bit Score: 43.87  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  179 KPDFVLIR----QHAFSMARNgdyrslvigLQYAGIPSVNSLHSVYNFCDKPWVvirlHKKLGTEEFPLIDQTFYPNHKE 254
Cdd:TIGR00768  48 ELDVVIVRivsmFRGLAVLRY---------LESLGVPVINSSDAILNAGDKFLS----HQLLAKAGIPLPRTGLAGSPEE 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  255 ---MLSSTTYPVVVKMGHAHSGMGKVKVDnqhDFQDIASVV-ALTKTYATAEPFIDAKY-------DVRVQKIGQNYKAY 323
Cdd:TIGR00768 115 alkLIEEIGFPVVLKPVFGSWGRGVSLAR---DRQAAESLLeHFEQLNGPQNLFLVQEYikkpggrDIRVFVVGDEVVAA 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  324 MRTSVSGNWKTNT---GSAM-------LEQIAMSdryklwvdtCSEIFgGLDICAVEALHGKDGrdHIIEVVGSSMPLIG 393
Cdd:TIGR00768 192 IYRITSGHWRSNLargGKAEpcslteeIEELAIK---------AAKAL-GLDVAGVDLLESEDG--LLVNEVNANPEFKN 259
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 496-667 3.07e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 3.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 496 PAGSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPAPTKAS 575
Cdd:PRK07764 615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 576 GAPPGGQQRQGPPQKppGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAKPQLAQKPSQDVPPPITAAAGGPPH 655
Cdd:PRK07764 695 GAAPAQPAPAPAATP--PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAA 772

                        170
                 ....*....|..
gi 148668411 656 PQLKASPSQAQP 667
Cdd:PRK07764 773 APPPSPPSEEEE 784
dnaA PRK14086
chromosomal replication initiator protein DnaA;
495-660 3.85e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 43.66  E-value: 3.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 495 PPAGSPLPQRLPSPTAA-------PQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPP----------ASPSPQRQAGA 557
Cdd:PRK14086  95 PAPPPPHARRTSEPELPrpgrrpyEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPepgawpraadDYGWQQQRLGF 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 558 PQATRQASISGPAPTKASGAPPGGQQRQGPPqkppgpagpTRQASQAGPGPRTGPP---TTQQPRPS---------GPGP 625
Cdd:PRK14086 175 PPRAPYASPASYAPEQERDREPYDAGRPEYD---------QRRRDYDHPRPDWDRPrrdRTDRPEPPpgaghvhrgGPGP 245

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 148668411 626 AGRPAKPQLAQKPSQDVPP---PITAAAGGPPHPQLKA 660
Cdd:PRK14086 246 PERDDAPVVPIRPSAPGPLaaqPAPAPGPGEPTARLNP 283
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 492-649 1.65e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 492 GLGPPAGSPLPQRLPSPTAAPQQSASQAtpvtqgqgrqsrpvaggpgappaARppaspspqrQAGAPQATRQASISGPAP 571
Cdd:PRK07764 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPA-----------------------AA---------APAAAAAPAPAAAPQPAP 433

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 148668411 572 TKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAKPQLAQKPSQDVPPPITAA 649
Cdd:PRK07764 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
PHA03247 PHA03247
large tegument protein UL36; Provisional
 495-667 1.94e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  495 PPAGSPLPQRLPSPTAAPQQSASQATPVTQG----QGRQSRPVAGGPGAPPAARPPA-SPSPQRQAGAPQA-TRQASISG 568
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGgparPARPPTTAGPPAPAPPAAPAAGpPRRLTRPAVASLSeSRESLPSP 2801

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  569 PAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAG----RPAKPQLAQKPSQDVPP 644
Cdd:PHA03247 2802 WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGdvrrRPPSRSPAAKPAAPARP 2881

                         170       180
                  ....*....|....*....|...
gi 148668411  645 PITAAAGGPPHPQlkaSPSQAQP 667
Cdd:PHA03247 2882 PVRRLARPAVSRS---TESFALP 2901
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 555-667 2.10e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 2.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 555 AGAPQATRQASI-SGPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPA-KP 632
Cdd:PRK07764 391 AGAPAAAAPSAAaAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPApAP 470

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 148668411 633 QLAQKPSQDVPPPITAAAGGPPHPQLKASPSQAQP 667
Cdd:PRK07764 471 AAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PHA03378 PHA03378
EBNA-3B; Provisional
 495-625 2.27e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.21  E-value: 2.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 495 PPAGSPLPQRLP--SPTAA--PQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPA 570
Cdd:PHA03378 716 RPAAATGRARPPaaAPGRArpPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPT 795

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 148668411 571 PTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQP------RPSGPGP 625
Cdd:PHA03378 796 PQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPaalerqAAAGPTP 856
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 552-667 2.52e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 41.17  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  552 QRQAGAPQATRQASISgPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPS-----GPGPA 626
Cdd:pfam09770 202 AMRAQAKKPAQQPAPA-PAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQspqpdPAQPS 280

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 148668411  627 GRPAKPQLAQKPSQDVPPPI----------TAAAGGPPHPQLKASPSQAQP 667
Cdd:pfam09770 281 IQPQAQQFHQQPPPVPVQPTqilqnpnrlsAARVGYPQNPQPGVQPAPAHQ 331
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 552-667 4.64e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.05  E-value: 4.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 552 QRQAGAPQATRQASISGPAPTKASGAPPGGQQRQGPPQKPPGPAGPT----RQASQAGPGPRT----GPPTtqqPRPSGP 623
Cdd:PRK14959 372 RPSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSaapaTPAPSAAPSPRVpwddAPPA---PPRSGI 448

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 148668411 624 GPAGRPAKPQLAQKPSQdvPPPITAAAGGPPHPQLKASPSQAQP 667
Cdd:PRK14959 449 PPRPAPRMPEASPVPGA--PDSVASASDAPPTLGDPSDTAEHTP 490
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 553-667 6.48e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 6.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 553 RQAGAPQATRQASISGPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAgPGPRTGPPTTQQPRPSGPGPAGRP-AK 631
Cdd:PRK07764 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPA-PAPAPAPPSPAGNAPAGGAPSPPPaAA 461

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 148668411 632 PQLAQKPSQDVPPPITAAAGGPPHPQLKASPSQAQP 667
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP 497
PRK11901 PRK11901
hypothetical protein; Reviewed
 511-667 6.64e-03

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 39.28  E-value: 6.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 511 APQQSASQATPVTQGQGR---------QSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPAPTKASGAPPGG 581
Cdd:PRK11901  60 SPTEHESQQSSNNAGAEKnidlsgsssLSSGNQSSPSAANNTSDGHDASGVKNTAPPQDISAPPISPTPTQAAPPQTPNG 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411 582 QQRQGPPQKPPGPAGPTR----QASQAGPGPRTGPPT---TQQPRPSGPGPAGRPAKPQLAQKPSQDVPPPITAAAggPP 654
Cdd:PRK11901 140 QQRIELPGNISDALSQQQgqvnAASQNAQGNTSTLPTapaTVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKT--AT 217

                        170
                 ....*....|...
gi 148668411 655 HPQLKASPSQAQP 667
Cdd:PRK11901 218 VAVPPATSGKPKS 230
PHA03247 PHA03247
large tegument protein UL36; Provisional
 412-660 7.27e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  412 TQALPRQPQRDASPGRGSHSQSSSPGALTLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLS 491
Cdd:PHA03247 2747 GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  492 GLGPPAgSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAarppASPSpqrqagaPQATRQASISGPAP 571
Cdd:PHA03247 2827 PLPPPT-SAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA----APAR-------PPVRRLARPAVSRS 2894

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 148668411  572 TKASGAPPGGQQRQGPpqkppgpagptrqaSQAGPGPRTGPPTTQQPRPSGPGPAgrPAKPQlAQKPSQDVPPPITAAAG 651
Cdd:PHA03247 2895 TESFALPPDQPERPPQ--------------PQAPPPPQPQPQPPPPPQPQPPPPP--PPRPQ-PPLAPTTDPAGAGEPSG 2957


                  ....*....
gi 148668411  652 GPPHPQLKA 660
Cdd:PHA03247 2958 AVPQPWLGA 2966
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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