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Conserved domains on  [gi|136940852|gb|EBR30808|]
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hypothetical protein GOS_7620419, partial [marine metagenome]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
selB_III cd15491
Domain III of selenocysteine-specific translation elongation factor; This family represents ...
23-107 3.94e-39

Domain III of selenocysteine-specific translation elongation factor; This family represents domain III of bacterial selenocysteine (Sec)-specific elongation factor (EFSec), homologous to domain III of EF-Tu. SelB is a specialized translation elongation factor responsible for the co-translational incorporation of selenocysteine into proteins by recoding of a UGA stop codon in the presence of a downstream mRNA hairpin loop, called Sec insertion sequence (SECIS) element.


:

Pssm-ID: 294012 [Multi-domain]  Cd Length: 87  Bit Score: 125.63  E-value: 3.94e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 136940852  23 SFMLNVELSLLEDAPADIRQRNRVRFHLGSQEVMGRVILLENDHLPRGTKVLAQLRLEEEVSSRYGDRFILRSYSPLMTL 102
Cdd:cd15491    3 TYRIDVRLTLLKSAPRPLKHRTRVRLHLGTSEVLGRVVLLDRDELAPGEEALAQLRLEEPVVAKRGDRFILRSYSPMRTI 82

                 ....*
gi 136940852 103 GGGRI 107
Cdd:cd15491   83 GGGRV 87
 
Name Accession Description Interval E-value
selB_III cd15491
Domain III of selenocysteine-specific translation elongation factor; This family represents ...
23-107 3.94e-39

Domain III of selenocysteine-specific translation elongation factor; This family represents domain III of bacterial selenocysteine (Sec)-specific elongation factor (EFSec), homologous to domain III of EF-Tu. SelB is a specialized translation elongation factor responsible for the co-translational incorporation of selenocysteine into proteins by recoding of a UGA stop codon in the presence of a downstream mRNA hairpin loop, called Sec insertion sequence (SECIS) element.


Pssm-ID: 294012 [Multi-domain]  Cd Length: 87  Bit Score: 125.63  E-value: 3.94e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 136940852  23 SFMLNVELSLLEDAPADIRQRNRVRFHLGSQEVMGRVILLENDHLPRGTKVLAQLRLEEEVSSRYGDRFILRSYSPLMTL 102
Cdd:cd15491    3 TYRIDVRLTLLKSAPRPLKHRTRVRLHLGTSEVLGRVVLLDRDELAPGEEALAQLRLEEPVVAKRGDRFILRSYSPMRTI 82

                 ....*
gi 136940852 103 GGGRI 107
Cdd:cd15491   83 GGGRV 87
SelB COG3276
Selenocysteine-specific translation elongation factor SelB [Translation, ribosomal structure ...
1-107 5.87e-36

Selenocysteine-specific translation elongation factor SelB [Translation, ribosomal structure and biogenesis]; Selenocysteine-specific translation elongation factor SelB is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 442507 [Multi-domain]  Cd Length: 630  Bit Score: 128.49  E-value: 5.87e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 136940852   1 AGISQLSVQRGEQLAGRDSLINSFMLNVELSLLEDAPADIRQRNRVRFHLGSQEVMGRVILLENDHLPRGTKVLAQLRLE 80
Cdd:COG3276  244 AGVEKEEIERGDVLAAPGALRPTDRIDVRLRLLPSAPRPLKHWQRVHLHHGTAEVLARVVLLDREELAPGEEALAQLRLE 323
                         90       100
                 ....*....|....*....|....*..
gi 136940852  81 EEVSSRYGDRFILRSYSPLMTLGGGRI 107
Cdd:COG3276  324 EPLVAARGDRFILRDYSPRRTIGGGRV 350
PRK10512 PRK10512
selenocysteinyl-tRNA-specific translation factor; Provisional
2-107 1.54e-04

selenocysteinyl-tRNA-specific translation factor; Provisional


Pssm-ID: 182508 [Multi-domain]  Cd Length: 614  Bit Score: 39.26  E-value: 1.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 136940852   2 GISQLSVQRGEQLAGRDSLINSFMLNVELslleDAPADIRQRNRVRFHLGSQEVMGRVILLENDhlprgtkvLAQLRLEE 81
Cdd:PRK10512 244 DAEKEQINRGDWLLADAPPEPFTRVIVEL----QTHTPLTQWQPLHIHHAASHVTGRVSLLEDN--------LAELVLDT 311
                         90       100
                 ....*....|....*....|....*.
gi 136940852  82 EVSSRYGDRFILRSYSPLMTLGGGRI 107
Cdd:PRK10512 312 PLWLADNDRLVLRDISARNTLAGARV 337
 
Name Accession Description Interval E-value
selB_III cd15491
Domain III of selenocysteine-specific translation elongation factor; This family represents ...
23-107 3.94e-39

Domain III of selenocysteine-specific translation elongation factor; This family represents domain III of bacterial selenocysteine (Sec)-specific elongation factor (EFSec), homologous to domain III of EF-Tu. SelB is a specialized translation elongation factor responsible for the co-translational incorporation of selenocysteine into proteins by recoding of a UGA stop codon in the presence of a downstream mRNA hairpin loop, called Sec insertion sequence (SECIS) element.


Pssm-ID: 294012 [Multi-domain]  Cd Length: 87  Bit Score: 125.63  E-value: 3.94e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 136940852  23 SFMLNVELSLLEDAPADIRQRNRVRFHLGSQEVMGRVILLENDHLPRGTKVLAQLRLEEEVSSRYGDRFILRSYSPLMTL 102
Cdd:cd15491    3 TYRIDVRLTLLKSAPRPLKHRTRVRLHLGTSEVLGRVVLLDRDELAPGEEALAQLRLEEPVVAKRGDRFILRSYSPMRTI 82

                 ....*
gi 136940852 103 GGGRI 107
Cdd:cd15491   83 GGGRV 87
SelB COG3276
Selenocysteine-specific translation elongation factor SelB [Translation, ribosomal structure ...
1-107 5.87e-36

Selenocysteine-specific translation elongation factor SelB [Translation, ribosomal structure and biogenesis]; Selenocysteine-specific translation elongation factor SelB is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 442507 [Multi-domain]  Cd Length: 630  Bit Score: 128.49  E-value: 5.87e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 136940852   1 AGISQLSVQRGEQLAGRDSLINSFMLNVELSLLEDAPADIRQRNRVRFHLGSQEVMGRVILLENDHLPRGTKVLAQLRLE 80
Cdd:COG3276  244 AGVEKEEIERGDVLAAPGALRPTDRIDVRLRLLPSAPRPLKHWQRVHLHHGTAEVLARVVLLDREELAPGEEALAQLRLE 323
                         90       100
                 ....*....|....*....|....*..
gi 136940852  81 EEVSSRYGDRFILRSYSPLMTLGGGRI 107
Cdd:COG3276  324 EPLVAARGDRFILRDYSPRRTIGGGRV 350
PRK10512 PRK10512
selenocysteinyl-tRNA-specific translation factor; Provisional
2-107 1.54e-04

selenocysteinyl-tRNA-specific translation factor; Provisional


Pssm-ID: 182508 [Multi-domain]  Cd Length: 614  Bit Score: 39.26  E-value: 1.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 136940852   2 GISQLSVQRGEQLAGRDSLINSFMLNVELslleDAPADIRQRNRVRFHLGSQEVMGRVILLENDhlprgtkvLAQLRLEE 81
Cdd:PRK10512 244 DAEKEQINRGDWLLADAPPEPFTRVIVEL----QTHTPLTQWQPLHIHHAASHVTGRVSLLEDN--------LAELVLDT 311
                         90       100
                 ....*....|....*....|....*.
gi 136940852  82 EVSSRYGDRFILRSYSPLMTLGGGRI 107
Cdd:PRK10512 312 PLWLADNDRLVLRDISARNTLAGARV 337
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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