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Conserved domains on  [gi|119578296|gb|EAW57892|]
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splicing factor, arginine/serine-rich 2, interacting protein, isoform CRA_a [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK12678 super family cl36163
transcription termination factor Rho; Provisional
458-694 6.37e-07

transcription termination factor Rho; Provisional


The actual alignment was detected with superfamily member PRK12678:

Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 53.75  E-value: 6.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  458 PSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPkNESARGRKKSRSQSPK 537
Cdd:PRK12678   66 AAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQAR-ERRERGEAARRGAARK 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  538 KDIARERRQSQSRSPKRDTTRESRRSEslsPRRETSRENKRSQPRVKDSSPGEKSRSQSRERESDRDGQRRERERRTRKW 617
Cdd:PRK12678  145 AGEGGEQPATEARADAAERTEEEERDE---RRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 119578296  618 SRSRSHSRSPSrcrtkskSSSFGRIDRDSYSPRWKGRWANDGWRCPRGNDRYRKNDPEKQNENTRKEKNDIHLDADD 694
Cdd:PRK12678  222 DGGDRRGRRRR-------RDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
 
Name Accession Description Interval E-value
PRK12678 PRK12678
transcription termination factor Rho; Provisional
458-694 6.37e-07

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 53.75  E-value: 6.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  458 PSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPkNESARGRKKSRSQSPK 537
Cdd:PRK12678   66 AAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQAR-ERRERGEAARRGAARK 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  538 KDIARERRQSQSRSPKRDTTRESRRSEslsPRRETSRENKRSQPRVKDSSPGEKSRSQSRERESDRDGQRRERERRTRKW 617
Cdd:PRK12678  145 AGEGGEQPATEARADAAERTEEEERDE---RRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 119578296  618 SRSRSHSRSPSrcrtkskSSSFGRIDRDSYSPRWKGRWANDGWRCPRGNDRYRKNDPEKQNENTRKEKNDIHLDADD 694
Cdd:PRK12678  222 DGGDRRGRRRR-------RDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
506-603 3.94e-06

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 51.05  E-value: 3.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   506 RETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQP--RV 583
Cdd:TIGR01642    3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPrrRS 82
                           90       100
                   ....*....|....*....|
gi 119578296   584 KDSSPGEKSRSQSRERESDR 603
Cdd:TIGR01642   83 RSVRSIEQHRRRLRDRSPSN 102
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
457-599 1.20e-03

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 42.46  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   457 QPSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSP 536
Cdd:pfam17069   14 QEKKSPSTSSSGSSSRLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSRPRRSRSRSRSRRRHQRKYRRYSRSYSRSRSRSR 93
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119578296   537 KKDIARERRQSQSRSPKRDTTRESRRSESLSPRRET------SRENKRSQPRVKDSSPGEKSRSQSRER 599
Cdd:pfam17069   94 RRRYYRRSRYRYSRRYYRSPSRSRSRSRSRSRGRSYyaiwrgSRYYGFGRTVYPERSPRWRSRSRTRSR 162
 
Name Accession Description Interval E-value
PRK12678 PRK12678
transcription termination factor Rho; Provisional
458-694 6.37e-07

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 53.75  E-value: 6.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  458 PSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPkNESARGRKKSRSQSPK 537
Cdd:PRK12678   66 AAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQAR-ERRERGEAARRGAARK 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  538 KDIARERRQSQSRSPKRDTTRESRRSEslsPRRETSRENKRSQPRVKDSSPGEKSRSQSRERESDRDGQRRERERRTRKW 617
Cdd:PRK12678  145 AGEGGEQPATEARADAAERTEEEERDE---RRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 119578296  618 SRSRSHSRSPSrcrtkskSSSFGRIDRDSYSPRWKGRWANDGWRCPRGNDRYRKNDPEKQNENTRKEKNDIHLDADD 694
Cdd:PRK12678  222 DGGDRRGRRRR-------RDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
506-603 3.94e-06

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 51.05  E-value: 3.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   506 RETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQP--RV 583
Cdd:TIGR01642    3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPrrRS 82
                           90       100
                   ....*....|....*....|
gi 119578296   584 KDSSPGEKSRSQSRERESDR 603
Cdd:TIGR01642   83 RSVRSIEQHRRRLRDRSPSN 102
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
506-604 6.03e-06

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 50.30  E-value: 6.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   506 RETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESR--------RSESLSPRRETSRENK 577
Cdd:TIGR01622    7 RERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDRDYYRGRERRSRsrrpnrryRPREKRRRRGDSYRRR 86
                           90       100
                   ....*....|....*....|....*..
gi 119578296   578 RSQPRVKDSSPGEKSRSQSRERESDRD 604
Cdd:TIGR01622   87 RDDRRSRREKPRARDGTPEPLTEDERD 113
PRK12678 PRK12678
transcription termination factor Rho; Provisional
448-608 3.01e-05

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 48.36  E-value: 3.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  448 ADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESA-- 525
Cdd:PRK12678   81 ARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARAda 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  526 --RGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRS-QPRVKDSSPGEKSRSQSRERESD 602
Cdd:PRK12678  161 aeRTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREeRGRRDGGDRRGRRRRRDRRDARG 240

                  ....*.
gi 119578296  603 RDGQRR 608
Cdd:PRK12678  241 DDNRED 246
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
456-599 3.69e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.78  E-value: 3.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  456 SQPSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQS 535
Cdd:PHA03307  242 SESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSS 321
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119578296  536 PKKDIARERRQSQSR-----SPKRDTTReSRRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRER 599
Cdd:PHA03307  322 RESSSSSTSSSSESSrgaavSPGPSPSR-SPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRR 389
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
523-604 5.11e-04

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 44.11  E-value: 5.11e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   523 ESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRS-QPRVKDSSPGEKSRSQSRERES 601
Cdd:TIGR01642    4 EPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSrSPRSLRYSSVRRSRDRPRRRSR 83

                   ...
gi 119578296   602 DRD 604
Cdd:TIGR01642   84 SVR 86
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
490-579 9.90e-04

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 42.96  E-value: 9.90e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   490 KDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRD-----TTRESRRSE 564
Cdd:TIGR01642   17 RDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSrsvrsIEQHRRRLR 96
                           90
                   ....*....|....*
gi 119578296   565 SLSPRRETSRENKRS 579
Cdd:TIGR01642   97 DRSPSNQWRKDDKKR 111
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
457-599 1.20e-03

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 42.46  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   457 QPSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSP 536
Cdd:pfam17069   14 QEKKSPSTSSSGSSSRLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSRPRRSRSRSRSRRRHQRKYRRYSRSYSRSRSRSR 93
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119578296   537 KKDIARERRQSQSRSPKRDTTRESRRSESLSPRRET------SRENKRSQPRVKDSSPGEKSRSQSRER 599
Cdd:pfam17069   94 RRRYYRRSRYRYSRRYYRSPSRSRSRSRSRSRGRSYyaiwrgSRYYGFGRTVYPERSPRWRSRSRTRSR 162
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
530-603 1.47e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 42.60  E-value: 1.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   530 KSRSQSPKKDiaRERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKR-------SQPRVKDSSPGEKSRSQSRERESD 602
Cdd:TIGR01622    1 RYRDRERERL--RDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRhrdrdyyRGRERRSRSRRPNRRYRPREKRRR 78

                   .
gi 119578296   603 R 603
Cdd:TIGR01622   79 R 79
PRK13863 PRK13863
T-DNA border endonuclease VirD2;
413-605 1.95e-03

T-DNA border endonuclease VirD2;


Pssm-ID: 237533 [Multi-domain]  Cd Length: 446  Bit Score: 42.24  E-value: 1.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  413 QNESEVEPSVNADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRtRRSRFHSPSTtwSPNKDT 492
Cdd:PRK13863  254 QNESEVRLQEPAGSSIKADARIRVSLESERRAQPSASKIPVADDFGIETSYVAEGDVRKLE-GNSGTPRLAT--EVATHT 330
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  493 PQEkkrpQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSP--KKDIARERRQSQSRSPKRDTTRESRRSESLSP-- 568
Cdd:PRK13863  331 TSE----RQQRRKRPRDDEGEPSGAKRTRLNGIAVGPEANAGEQdgRDDPITSPAQPPRSNPLADPVRASIATDSLPAta 406
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 119578296  569 RRETSRENKRSQPRVKDSSPGEKSRSQSRERESDRDG 605
Cdd:PRK13863  407 DRQQQREPSSKRPRDDDGEPSIRKRARDGRSQDGREG 443
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
490-599 2.02e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 42.19  E-value: 2.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   490 KDTPQEKKRPQSPSPRRETGKESRKSQSPSpknesaRGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRES--RRSESLS 567
Cdd:TIGR01642    5 PDREREKSRGRDRDRSSERPRRRSRDRSRF------RDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSsvRRSRDRP 78
                           90       100       110
                   ....*....|....*....|....*....|...
gi 119578296   568 PRRETSRE-NKRSQPRVKDSSPGEKSRSQSRER 599
Cdd:TIGR01642   79 RRRSRSVRsIEQHRRRLRDRSPSNQWRKDDKKR 111
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
492-654 2.36e-03

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 41.30  E-value: 2.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   492 TPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIAReRRQSQSRSPKRDTTRESRRSESLSPRRE 571
Cdd:pfam17069   12 SPQEKKSPSTSSSGSSSRLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSRPR-RSRSRSRSRRRHQRKYRRYSRSYSRSRS 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296   572 TSReNKRSQPRVKDSSPGEKSRSQSREResdrdgqrrererrtrKWSRSRSHSRSPSRCRTKSKSSSFGRIDRDSYSPRW 651
Cdd:pfam17069   91 RSR-RRRYYRRSRYRYSRRYYRSPSRSR----------------SRSRSRSRGRSYYAIWRGSRYYGFGRTVYPERSPRW 153

                   ...
gi 119578296   652 KGR 654
Cdd:pfam17069  154 RSR 156
PRP38_assoc pfam12871
Pre-mRNA-splicing factor 38-associated hydrophilic C-term; This domain is a hydrophilic region ...
535-606 3.30e-03

Pre-mRNA-splicing factor 38-associated hydrophilic C-term; This domain is a hydrophilic region found at the C-terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function is not known.


Pssm-ID: 463734 [Multi-domain]  Cd Length: 98  Bit Score: 38.22  E-value: 3.30e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 119578296   535 SPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRERESDRDGQ 606
Cdd:pfam12871   25 SDESERASLSRKRRSRSRRRSSTRDRSRSRSRSRSRDRRSRGTRDRRRDRDRDRYRSLRSRSRDRSRDRDRD 96
PLN02543 PLN02543
pfkB-type carbohydrate kinase family protein
458-576 5.96e-03

pfkB-type carbohydrate kinase family protein


Pssm-ID: 215299  Cd Length: 496  Bit Score: 40.66  E-value: 5.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119578296  458 PSESPKDTIDKTKKPRTRRSRFHSPSttwsPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPkneSARGRKKSRSQSPK 537
Cdd:PLN02543    8 PHLHHSYSSLDRREKTCLRSSQKTRR----FPKPKASLHPSIKRSRPGRCSTNGAAVPESPKP---SRRGRKKKPTSSPP 80
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 119578296  538 KDIARERrqsqsRSPKRDTTRESRRSESLSPRRETSREN 576
Cdd:PLN02543   81 KAKTTRR-----RTKKTDQELDPEGAEEDQEAAEDGEDY 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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