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Conserved domains on  [gi|2235893098|tpg|DAZ88925|]
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TPA_asm: ribosomal protein S19 (mitochondrion) [Phytophthora nicotianae CJ01A1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S19 super family cl46692
Ribosomal protein S19;
7-69 3.71e-17

Ribosomal protein S19;


The actual alignment was detected with superfamily member pfam00203:

Pssm-ID: 459710  Cd Length: 80  Bit Score: 68.19  E-value: 3.71e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2235893098  7 KGPFFKVNLLKKKQWMKITNKN---------LIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:pfam00203  4 KGPFVDHKLLKKVRKAKAAGKPkvikthsrdSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTR 75
 
Name Accession Description Interval E-value
Ribosomal_S19 pfam00203
Ribosomal protein S19;
7-69 3.71e-17

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 68.19  E-value: 3.71e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2235893098  7 KGPFFKVNLLKKKQWMKITNKN---------LIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:pfam00203  4 KGPFVDHKLLKKVRKAKAAGKPkvikthsrdSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTR 75
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 1-69 3.27e-16

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 66.25  E-value: 3.27e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235893098  1 MSRSKYKGPFFKVNLLKKKQWMKITNKN---------LIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:COG0185    1 MRRSLKKGPFVDEKLLKKVEKANESGEKkviktwsrrSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTR 78
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 1-69 4.36e-16

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 66.23  E-value: 4.36e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235893098  1 MSRSKYKGPFFKVNLLKKKQWMKITNKNLI---------ILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:TIGR01050  1 MSRSLKKGPFVDHHLLKKVEKLNESGKKKViktwsrrstIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTR 78
rpsS PRK00357
30S ribosomal protein S19; Reviewed
 1-69 3.72e-15

30S ribosomal protein S19; Reviewed


Pssm-ID: 178985  Cd Length: 92  Bit Score: 63.66  E-value: 3.72e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235893098  1 MSRSKYKGPFFKVNLLKKKQWMKITN-KNLI--------ILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:PRK00357   1 MARSLKKGPFVDGHLLKKVEKANESGdKKVIktwsrrstILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTR 78
 
Name Accession Description Interval E-value
Ribosomal_S19 pfam00203
Ribosomal protein S19;
7-69 3.71e-17

Ribosomal protein S19;


Pssm-ID: 459710  Cd Length: 80  Bit Score: 68.19  E-value: 3.71e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2235893098  7 KGPFFKVNLLKKKQWMKITNKN---------LIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:pfam00203  4 KGPFVDHKLLKKVRKAKAAGKPkvikthsrdSTILPEMVGLTFAVYNGKTFVPVEITEEMVGHKLGEFSPTR 75
RpsS COG0185
Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 ...
 1-69 3.27e-16

Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S19 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439955  Cd Length: 95  Bit Score: 66.25  E-value: 3.27e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235893098  1 MSRSKYKGPFFKVNLLKKKQWMKITNKN---------LIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:COG0185    1 MRRSLKKGPFVDEKLLKKVEKANESGEKkviktwsrrSTILPEMVGLTIAVHNGKKFVPVYITEEMVGHKLGEFAPTR 78
rpsS_bact TIGR01050
ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol ...
 1-69 4.36e-16

ribosomal protein S19, bacterial/organelle; The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130122  Cd Length: 92  Bit Score: 66.23  E-value: 4.36e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235893098  1 MSRSKYKGPFFKVNLLKKKQWMKITNKNLI---------ILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:TIGR01050  1 MSRSLKKGPFVDHHLLKKVEKLNESGKKKViktwsrrstIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAPTR 78
rpsS PRK00357
30S ribosomal protein S19; Reviewed
 1-69 3.72e-15

30S ribosomal protein S19; Reviewed


Pssm-ID: 178985  Cd Length: 92  Bit Score: 63.66  E-value: 3.72e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235893098  1 MSRSKYKGPFFKVNLLKKKQWMKITN-KNLI--------ILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:PRK00357   1 MARSLKKGPFVDGHLLKKVEKANESGdKKVIktwsrrstILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAPTR 78
rps19 CHL00050
ribosomal protein S19
 1-69 1.01e-13

ribosomal protein S19


Pssm-ID: 176991  Cd Length: 92  Bit Score: 59.94  E-value: 1.01e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2235893098  1 MSRSKYKGPFFKVNLLKK---------KQWMKITNKNLIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:CHL00050   1 MTRSLKKNPFVANHLLKKieklntkeeKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAPTR 78
rps19p PRK04038
30S ribosomal protein S19P; Provisional
 27-69 2.28e-09

30S ribosomal protein S19P; Provisional


Pssm-ID: 235209  Cd Length: 134  Bit Score: 49.86  E-value: 2.28e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2235893098  27 KNLIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:PRK04038   70 RDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTR 112
PTZ00096 PTZ00096
40S ribosomal protein S15; Provisional
 27-65 4.55e-09

40S ribosomal protein S15; Provisional


Pssm-ID: 185442  Cd Length: 143  Bit Score: 49.25  E-value: 4.55e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2235893098  27 KNLIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEF 65
Cdd:PTZ00096   81 RDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEF 119
uS19_arch TIGR01025
ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal ...
 17-69 1.15e-08

ribosomal protein uS19, eukaryotic/archaeal form; This model represents eukaryotic ribosomal protein uS19 (previously S15) and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273400  Cd Length: 135  Bit Score: 48.30  E-value: 1.15e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2235893098  17 KKKQWMKITNKNLIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:TIGR01025  61 EKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITR 113
PLN03147 PLN03147
ribosomal protein S19; Provisional
 3-69 2.40e-07

ribosomal protein S19; Provisional


Pssm-ID: 178692  Cd Length: 92  Bit Score: 43.82  E-value: 2.40e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2235893098  3 RSKYKGPF---FKVNLLKKKQWM---KITNKNLIILPEYSNHSVSVYNGKIFINLEINDKMIGFKFGEFINTR 69
Cdd:PLN03147   1 QAIWKGAFvdaFLARIKKKRDLLlgkKIWSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTR 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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