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Conserved domains on  [gi|996236759|emb|CXJ02874|]
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Uroporphyrinogen-III methyltransferase [Staphylococcus aureus]

Protein Classification

uroporphyrinogen-III C-methyltransferase( domain architecture ID 10797055)

uroporphyrinogen-III C-methyltransferase catalyzes two sequential methylation reactions (on C2 and C7) of uroporphyrinogen-III (UROGEN) to yield precorrin-2

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
8-242 1.44e-118

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


:

Pssm-ID: 273643  Cd Length: 236  Bit Score: 341.13  E-value: 1.44e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759    8 KVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKV 87
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   88 VRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVNG 167
Cdd:TIGR01469  81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEVDWEALAKG 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 996236759  168 -GTLAIYMGVKRLGKIITQIQQY-TDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVVGYT 242
Cdd:TIGR01469 161 aGTLVIYMGVRNLPEIAKELIEHgRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKS-PALIVIGEVVALR 236
 
Name Accession Description Interval E-value
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
8-242 1.44e-118

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273643  Cd Length: 236  Bit Score: 341.13  E-value: 1.44e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759    8 KVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKV 87
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   88 VRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVNG 167
Cdd:TIGR01469  81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEVDWEALAKG 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 996236759  168 -GTLAIYMGVKRLGKIITQIQQY-TDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVVGYT 242
Cdd:TIGR01469 161 aGTLVIYMGVRNLPEIAKELIEHgRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKS-PALIVIGEVVALR 236
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
12-239 6.80e-104

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 303.59  E-value: 6.80e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  12 IGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKVVRLK 91
Cdd:cd11642    1 VGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALAPPGAELIYVGKRPGRHSVPQEEINELLVELAREGKRVVRLK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  92 GGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVNGGTLA 171
Cdd:cd11642   81 GGDPFVFGRGGEEIEALREAGIPFEVVPGITSAIAAAAYAGIPLTHRGVASSVTFVTGHEADGKLPDDDAALARPGGTLV 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 996236759 172 IYMGVKRLGKIITQ-IQQYTDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVV 239
Cdd:cd11642  161 IYMGVSNLEEIAERlIAAGLPPDTPVAIVENATTPDQRVVVGTLAELAEKAAEAGIRS-PALIVVGEVV 228
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
7-243 1.59e-100

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 295.44  E-value: 1.59e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNK 86
Cdd:COG0007    2 GKVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALARPDAELIYVGKRGGRHSLPQEEINALLVELARAGKR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEEnEVDVNSLVN 166
Cdd:COG0007   82 VVRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASSVTFVTGHEKDGKL-DLDWAALAR 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 996236759 167 -GGTLAIYMGVKRLGKIITQ-IQQYTDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVVGYTE 243
Cdd:COG0007  161 pGGTLVIYMGVKNLPEIAAAlIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKS-PALIVVGEVVALRE 238
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
7-239 4.46e-84

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 253.98  E-value: 4.46e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNK 86
Cdd:PRK06136   3 GKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARKGKV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFK-DSEENEVDVNSLV 165
Cdd:PRK06136  83 VVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAaGKLEPEVNWSALA 162
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 996236759 166 NGG-TLAIYMGVKRLGKIITQIQQYT-DIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVV 239
Cdd:PRK06136 163 DGAdTLVIYMGVRNLPYIAAQLLAAGrAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQS-PAIIVIGEVV 237
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
8-217 3.78e-53

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 173.30  E-value: 3.78e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759    8 KVYLIGAGPGNPNYLTKKAERLIREAEVILYDR-LVNPLILQYANLTTEIIDVGKKPyAKHIQQEKINDCIVEAARRYNK 86
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVVLGDDsRALEILLDLLPEDLYFPMTEDKE-PLEEAYEEIAEALAAALRAGKD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGhfKDSEENEVDVNSLVN 166
Cdd:pfam00590  80 VARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLPG--LARIELRLLEALLAN 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 996236759  167 GGTLAIYMGVKRLGKIITQIQQYTDIDYPIAIVFQASCFNEFVVKGHLSNI 217
Cdd:pfam00590 158 GDTVVLLYGPRRLAELAELLLELYPDTTPVAVVERAGTPDEKVVRGTLGEL 208
 
Name Accession Description Interval E-value
cobA_cysG_Cterm TIGR01469
uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with ...
8-242 1.44e-118

uroporphyrin-III C-methyltransferase; This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273643  Cd Length: 236  Bit Score: 341.13  E-value: 1.44e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759    8 KVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKV 87
Cdd:TIGR01469   1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYDALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKKV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   88 VRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVNG 167
Cdd:TIGR01469  81 VRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEVDWEALAKG 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 996236759  168 -GTLAIYMGVKRLGKIITQIQQY-TDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVVGYT 242
Cdd:TIGR01469 161 aGTLVIYMGVRNLPEIAKELIEHgRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKS-PALIVIGEVVALR 236
SUMT cd11642
Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen ...
12-239 6.80e-104

Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.


Pssm-ID: 381169  Cd Length: 228  Bit Score: 303.59  E-value: 6.80e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  12 IGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNKVVRLK 91
Cdd:cd11642    1 VGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALAPPGAELIYVGKRPGRHSVPQEEINELLVELAREGKRVVRLK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  92 GGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVNGGTLA 171
Cdd:cd11642   81 GGDPFVFGRGGEEIEALREAGIPFEVVPGITSAIAAAAYAGIPLTHRGVASSVTFVTGHEADGKLPDDDAALARPGGTLV 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 996236759 172 IYMGVKRLGKIITQ-IQQYTDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVV 239
Cdd:cd11642  161 IYMGVSNLEEIAERlIAAGLPPDTPVAIVENATTPDQRVVVGTLAELAEKAAEAGIRS-PALIVVGEVV 228
CysG COG0007
Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; ...
7-243 1.59e-100

Uroporphyrinogen-III methylase (siroheme synthase) [Coenzyme transport and metabolism]; Uroporphyrinogen-III methylase (siroheme synthase) is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 439778 [Multi-domain]  Cd Length: 245  Bit Score: 295.44  E-value: 1.59e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNK 86
Cdd:COG0007    2 GKVYLVGAGPGDPDLLTLKALRALQQADVVLYDRLVSPEILALARPDAELIYVGKRGGRHSLPQEEINALLVELARAGKR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEEnEVDVNSLVN 166
Cdd:COG0007   82 VVRLKGGDPFVFGRGGEEAEALAAAGIPFEVVPGITAAIAAPAYAGIPLTHRGVASSVTFVTGHEKDGKL-DLDWAALAR 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 996236759 167 -GGTLAIYMGVKRLGKIITQ-IQQYTDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVVGYTE 243
Cdd:COG0007  161 pGGTLVIYMGVKNLPEIAAAlIAAGRSPDTPVAVIENGTTPDQRVVTGTLATLAELAAEAGLKS-PALIVVGEVVALRE 238
PRK06136 PRK06136
uroporphyrinogen-III C-methyltransferase;
7-239 4.46e-84

uroporphyrinogen-III C-methyltransferase;


Pssm-ID: 235711  Cd Length: 249  Bit Score: 253.98  E-value: 4.46e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNK 86
Cdd:PRK06136   3 GKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDDLVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARKGKV 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFK-DSEENEVDVNSLV 165
Cdd:PRK06136  83 VVRLKGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAaGKLEPEVNWSALA 162
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 996236759 166 NGG-TLAIYMGVKRLGKIITQIQQYT-DIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVV 239
Cdd:PRK06136 163 DGAdTLVIYMGVRNLPYIAAQLLAAGrAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQS-PAIIVIGEVV 237
PLN02625 PLN02625
uroporphyrin-III C-methyltransferase
7-251 4.69e-64

uroporphyrin-III C-methyltransferase


Pssm-ID: 178232 [Multi-domain]  Cd Length: 263  Bit Score: 203.32  E-value: 4.69e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNK 86
Cdd:PLN02625  15 GNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAEAGKT 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVN 166
Cdd:PLN02625  95 VVRLKGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGGTDPLDVAEAAA 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759 167 GG--TLAIYMGVKRLGKIITQIQQY-TDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEAkPGICIIGEVVGYTE 243
Cdd:PLN02625 175 DPdtTLVVYMGLGTLPSLAEKLIAAgLPPDTPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVS-PTVIVVGEVVALSP 253

                 ....*...
gi 996236759 244 NTPKSYDP 251
Cdd:PLN02625 254 LWPWAAEE 261
PRK07168 PRK07168
uroporphyrin-III C-methyltransferase;
7-239 1.81e-62

uroporphyrin-III C-methyltransferase;


Pssm-ID: 180864 [Multi-domain]  Cd Length: 474  Bit Score: 205.61  E-value: 1.81e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARRYNK 86
Cdd:PRK07168   3 GYVYLVGAGPGDEGLITKKAIECLKRADIVLYDRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLLQFAKEGKI 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVN 166
Cdd:PRK07168  83 VVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDHGKYNSSHN 162
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 996236759 167 GGTLAIYMGVKRLGKIITQIQQY-TDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIeAKPGICIIGEVV 239
Cdd:PRK07168 163 SDTIAYYMGIKNLPTICENLRQAgKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENI-SNPSMTIVGDVV 235
CobM COG2875
Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of ...
7-252 1.38e-55

Precorrin-4 methylase [Coenzyme transport and metabolism]; Precorrin-4 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 442122 [Multi-domain]  Cd Length: 256  Bit Score: 181.41  E-value: 1.38e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILY-DRLVNPLILQYANLTTEIIDvgkkpyAKHIQQEKINDCIVEAARRYN 85
Cdd:COG2875    3 GTVYFVGAGPGDPDLITVKGRRLLEEADVVLYaGSLVPPELLAYCKPGAEIVD------SASMTLEEIIALMKEAAAEGK 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  86 KVVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFK----DSEenevDV 161
Cdd:COG2875   77 DVVRLHSGDPSLYGAIAEQMRRLDALGIPYEVVPGVSAFAAAAAALGRELTLPEVSQTVILTRAEGRtpmpEGE----SL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759 162 NSLVN-GGTLAIYMGVKRLGKIITQIQQYTDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEaKPGICIIGEVVG 240
Cdd:COG2875  153 ASLAAhGATLAIYLSAHRIDEVVEELLEGYPPDTPVAVVYRASWPDEKIVRGTLADIAEKVKEAGIT-RTALILVGPALG 231
                        250
                 ....*....|....
gi 996236759 241 yTENTPKS--YDPT 252
Cdd:COG2875  232 -AEDFARSklYDPG 244
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
8-217 3.78e-53

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 173.30  E-value: 3.78e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759    8 KVYLIGAGPGNPNYLTKKAERLIREAEVILYDR-LVNPLILQYANLTTEIIDVGKKPyAKHIQQEKINDCIVEAARRYNK 86
Cdd:pfam00590   1 KLYLVGVGPGDPDLLTLRALRALKEADVVLGDDsRALEILLDLLPEDLYFPMTEDKE-PLEEAYEEIAEALAAALRAGKD 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGhfKDSEENEVDVNSLVN 166
Cdd:pfam00590  80 VARLVSGDPLVYGTGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLPG--LARIELRLLEALLAN 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 996236759  167 GGTLAIYMGVKRLGKIITQIQQYTDIDYPIAIVFQASCFNEFVVKGHLSNI 217
Cdd:pfam00590 158 GDTVVLLYGPRRLAELAELLLELYPDTTPVAVVERAGTPDEKVVRGTLGEL 208
Precorrin-4_C11-MT cd11641
Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates ...
12-240 3.40e-51

Precorrin-4 C11-methyltransferase (CbiF/CobM); Precorrin-4 C11-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. In the aerobic pathway, CobM catalyzes the methylation of precorrin-4 at C-11 to yield precorrin-5. In the anaerobic pathway, CibF catalyzes the methylation of cobalt-precorrin-4 to cobalt-precorrin-5. Both CibF and CobM, which are homologous, are included in this model. There are about 30 enzymes involved in vitamin B12 synthetic pathway. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared in both pathways and several of these enzymes are pathway-specific.


Pssm-ID: 381168 [Multi-domain]  Cd Length: 225  Bit Score: 168.73  E-value: 3.40e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  12 IGAGPGNPNYLTKKAERLIREAEVILY-DRLVNPLILQYANLTTEIIDVGKKPYakhiqqEKINDCIVEAARRYNKVVRL 90
Cdd:cd11641    1 VGAGPGDPELITVKGARLLEEADVVIYaGSLVPPELLAYAKPGAEIVDSAGMTL------EEIIEVMREAAREGKDVVRL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  91 KGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFK----DSEenevDVNSLV- 165
Cdd:cd11641   75 HTGDPSLYGAIREQIDALDKLGIPYEVVPGVSSFFAAAAALGTELTLPEVSQTVILTRLEGRtpvpEGE----SLRELAk 150
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 996236759 166 NGGTLAIYMGVKRLGKIITQ-IQQYTDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEaKPGICIIGEVVG 240
Cdd:cd11641  151 HGATLAIFLSAALIEEVVEElLAGGYPPDTPVAVVYKASWPDEKIIRGTLADLAEKVKEAGIT-RTALILVGPALG 225
cysG PRK10637
siroheme synthase CysG;
4-243 8.34e-48

siroheme synthase CysG;


Pssm-ID: 182606 [Multi-domain]  Cd Length: 457  Bit Score: 166.47  E-value: 8.34e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   4 DEYGKVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLILQYANLTTEIIDVGKKPYAKHIQQEKINDCIVEAARR 83
Cdd:PRK10637 213 DHRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQK 292
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  84 YNKVVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKdsEENEVDVNS 163
Cdd:PRK10637 293 GKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLK--TGGELDWEN 370
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759 164 LVNGG-TLAIYMGVKRLGKIITQ-IQQYTDIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSieaKPGICIIGEVVGY 241
Cdd:PRK10637 371 LAAEKqTLVFYMGLNQAATIQQKlIEHGMPADMPVALVENGTSVTQRVVSGTLTQLGELAQQVN---SPSLIIVGRVVGL 447

                 ..
gi 996236759 242 TE 243
Cdd:PRK10637 448 RD 449
cobM_cbiF TIGR01465
precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, ...
9-252 1.98e-45

precorrin-4 C11-methyltransferase; This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 200107  Cd Length: 247  Bit Score: 154.79  E-value: 1.98e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759    9 VYLIGAGPGNPNYLTKKAERLIREAEVILY-DRLVNPLILQYANLTTEIIDVGkkpyAKHIQQekINDCIVEAARRYNKV 87
Cdd:TIGR01465   1 VYFIGAGPGDPDLITVKGRKLIESADVILYaGSLVPPELLAHCRPGAEVVNSA----GMSLEE--IVDIMSDAHREGKDV 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   88 VRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLV-N 166
Cdd:TIGR01465  75 ARLHSGDPSIYGAIAEQMRLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRASGRTPMPEGEKLADLAkH 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  167 GGTLAIYMGVKRLGKIITQI--QQYTDiDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEaKPGICIIGEVVGyTEN 244
Cdd:TIGR01465 155 GATMAIFLSAHILDKVVKELieHGYSE-DTPVAVVYRATWPDEKIVRGTLADLADLVREEGIY-RTTLILVGPALD-PRI 231
                         250
                  ....*....|
gi 996236759  245 TPKS--YDPT 252
Cdd:TIGR01465 232 GKRSklYDPD 241
TP_methylase cd11724
uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily ...
8-240 2.48e-32

uncharacterized family of the tetrapyrrole methylase superfamily; Members of this superfamily use S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and Ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381178 [Multi-domain]  Cd Length: 243  Bit Score: 120.35  E-value: 2.48e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   8 KVYLIGAGPGNPNYLTKKAERLIREAEVILYDRlvnPLILQYANLTT--EIIDVGKKPY------------------AKH 67
Cdd:cd11724    1 KLYLVGVGPGDPDLITLRALKAIKKADVVFAPP---DLRKRFAEYLAgkEVLDDPHGLFtyygkkcspleeaekeceELE 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  68 IQQEKINDCIVEAARRYNKVVRLKGGDPAIFGRVQ---EEVDTLNnfniaFEIVPGVTSASAAVATLQTGLTMRTVAKSV 144
Cdd:cd11724   78 KQRAEIVQKIREALAQGKNVALLDSGDPTIYGPWIwylEEFADLN-----PEVIPGVSSFNAANAALKRSLTGGGDSRSV 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759 145 TFSTGHFKDSEENEVDvNSLVNGGTLAIYMGVKRLGKIITQIQQYTDIDYPIAIVFQASCFN-EFVVKGHLSNIISKLQH 223
Cdd:cd11724  153 ILTAPFALKENEDLLE-DLAATGDTLVIFMMRLDLDELVEKLKKHYPPDTPVAIVYHAGYSEkEKVIRGTLDDILEKLGG 231
                        250
                 ....*....|....*..
gi 996236759 224 ysiEAKPGICIIgeVVG 240
Cdd:cd11724  232 ---EKEPFLGLI--YVG 243
cbiF PRK15473
cobalt-precorrin-4 methyltransferase;
8-250 3.08e-29

cobalt-precorrin-4 methyltransferase;


Pssm-ID: 185370  Cd Length: 257  Bit Score: 112.54  E-value: 3.08e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   8 KVYLIGAGPGNPNYLTKKAERLIREAEVILY-DRLVNPLILQYANLTTEIIDvgkkpyAKHIQQEKINDCIVEAARRYNK 86
Cdd:PRK15473   9 CVWFVGAGPGDKELITLKGYRLLQQAQVVIYaGSLINTELLDYCPAQAECHD------SAELHLEQIIDLMEAGVKAGKT 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  87 VVRLKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMRTVAKSVTFSTGHFKDSEENEVDVNSLVN 166
Cdd:PRK15473  83 VVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVPAREQLESFAS 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759 167 GGT-LAIYMGVKRLGKIITQIQQ--YTdIDYPIAIVFQASCFNEFVVKGHLSNIISKLQHYSIEaKPGICIIGEVVGYTE 243
Cdd:PRK15473 163 HQTsMAIFLSVQRIHRVAERLIAggYP-ATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIR-KTALILVGNFLGEEY 240

                 ....*..
gi 996236759 244 NTPKSYD 250
Cdd:PRK15473 241 HYSKLYD 247
TP_methylase cd09815
S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet ...
12-218 3.62e-28

S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381167 [Multi-domain]  Cd Length: 219  Bit Score: 108.63  E-value: 3.62e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  12 IGAGPGNPNYLTKKAERLIREAEVILYDRLVNPLIlqyANLTTEIIDVGKKPYAK--HIQQEKINDCIVEAARRYNKVVR 89
Cdd:cd09815    1 VGVGPGDPDLLTLRALEILRAADVVVAEDKDSKLL---SLVLRAILKDGKRIYDLhdPNVEEEMAELLLEEARQGKDVAF 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  90 LKGGDPAIFGRVQEEVDTLNNFNIAFEIVPGVTSASAAVATLQtgltmRTVAKSVTFSTGHFKDSEENEVDVNSLVNGG- 168
Cdd:cd09815   78 LSPGDPGVAGTGAELVERAEREGVEVKVIPGVSAADAAAAALG-----IDLGESFLFVTASDLLENPRLLVLKALAKERr 152
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 996236759 169 TLAIYMGVKRLGKIITQIQQ-YTDIDYPIAIVFQASCFNEFVVKGHLSNII 218
Cdd:cd09815  153 HLVLFLDGHRFLKALERLLKeLGEDDTPVVLVANAGSEGEVIRTGTVKELR 203
Precorrin_3B_C17_MT cd11646
Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17) ...
9-131 6.10e-15

Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.


Pssm-ID: 381173 [Multi-domain]  Cd Length: 238  Bit Score: 72.83  E-value: 6.10e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   9 VYLIGAGPGNPNYLTKKAERLIREAEVIL-YDRlvnplilqYANLTTEIIDvGKKPYAKHIQQEkINDCI--VEAARRYN 85
Cdd:cd11646    1 LYVVGIGPGSADLMTPRAREALEEADVIVgYKT--------YLDLIEDLLP-GKEVISSGMGEE-VERAReaLELALEGK 70
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 996236759  86 KVVRLKGGDPAIFGR---VQEEVDTLNNfNIAFEIVPGVTSASAAVATL 131
Cdd:cd11646   71 RVALVSSGDPGIYGMaglVLELLDERWD-DIEVEVVPGITAALAAAALL 118
CobJ COG1010
Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of ...
7-131 1.86e-14

Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440634  Cd Length: 250  Bit Score: 71.64  E-value: 1.86e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVI----LYDRLVNPLIlqyanltteiidVGKKPYAKHIQQEkINDCI--VEA 80
Cdd:COG1010    4 GKLYVVGLGPGSAELMTPRARAALAEADVVvgygTYLDLIPPLL------------PGKEVHASGMREE-VERAReaLEL 70
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 996236759  81 ARRYNKVVRLKGGDPAIFGR---VQEEVDTLNNF-NIAFEIVPGVTSASAAVATL 131
Cdd:COG1010   71 AAEGKTVAVVSSGDPGVYGMaglVLEVLEEGGAWrDVEVEVVPGITAAQAAAARL 125
PRK05576 PRK05576
cobalt-factor II C(20)-methyltransferase;
6-137 5.45e-14

cobalt-factor II C(20)-methyltransferase;


Pssm-ID: 235512 [Multi-domain]  Cd Length: 229  Bit Score: 69.95  E-value: 5.45e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   6 YGKVYLIGAGPGNPNYLTKKAERLIREAEVIlY--------DRLVNPLILQYANLTTEIID----VGKKPYAKHIQQEKI 73
Cdd:PRK05576   1 MGKLYGIGLGPGDPELLTVKAARILEEADVV-YapasrkggGSLALNIVRPYLKEETEIVElhfpMSKDEEEKEAVWKEN 79
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 996236759  74 NDCIVEAARRYNKVVRLKGGDPAI---FGRVQEevdTLNNFNIAFEIVPGVTSASAAVATLQTGLTM 137
Cdd:PRK05576  80 AEEIAAEAEEGKNVAFITLGDPNLystFSHLLE---YLKCHDIEVETVPGISSFTAIASRAGVPLAM 143
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
7-138 1.01e-13

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 69.36  E-value: 1.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILY---------------DRLVNPLILQYANL--TTEIiDVGKKPYAKHIQ 69
Cdd:COG2243    3 GKLYGVGVGPGDPELLTLKAVRALREADVIAYpakgagkaslareivAPYLPPARIVELVFpmTTDY-EALVAAWDEAAA 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 996236759  70 QekindcIVEAARRYNKVVRLKGGDPAI---FGRVqeeVDTLNNFNIAFEIVPGVTSASAAVATLQTGLTMR 138
Cdd:COG2243   82 R------IAEELEAGRDVAFLTEGDPSLystFMYL---LERLRERGFEVEVIPGITSFSAAAAALGIPLAEG 144
PRK05765 PRK05765
precorrin-3B C17-methyltransferase; Provisional
7-137 1.40e-13

precorrin-3B C17-methyltransferase; Provisional


Pssm-ID: 235597  Cd Length: 246  Bit Score: 69.43  E-value: 1.40e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVIL-YDrlvnplilQYANLTTEIIDvGKKPYAKHIQQEKINDCI-VEAARRY 84
Cdd:PRK05765   2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIgYN--------TYLRLISDLLD-GKEVIGARMKEEIFRANTaIEKALEG 72
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 996236759  85 NKVVRLKGGDPAIFGRVQEEVDTL--NNFNIAFEIVPGVTSASAAVATLQTGLTM 137
Cdd:PRK05765  73 NIVALVSSGDPQVYGMAGLVFELIsrRKLDVDVEVIPGVTAALAAAARLGSPLSL 127
PRK05787 PRK05787
cobalt-precorrin-7 (C(5))-methyltransferase;
8-185 1.63e-12

cobalt-precorrin-7 (C(5))-methyltransferase;


Pssm-ID: 235609 [Multi-domain]  Cd Length: 210  Bit Score: 65.66  E-value: 1.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   8 KVYLIGAGPGNPNYLTKKAERLIREAEVILYDRLVnplILQYANLTTEIIDVGKKPYAKHIQQekindciVEAARRYNKV 87
Cdd:PRK05787   1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSKRV---LELFPELIDGEAFVLTAGLRDLLEW-------LELAAKGKNV 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  88 VRLKGGDPAIFG-----RVQEEVDTlnnfniAFEIVPGVTSASAAVAtlQTGLTMrtvaKSVTFSTGHFKDSEENEVDvN 162
Cdd:PRK05787  71 VVLSTGDPLFSGlgkllKVRRAVAE------DVEVIPGISSVQYAAA--RLGIDM----NDVVFTTSHGRGPNFEELE-D 137
                        170       180
                 ....*....|....*....|....*..
gi 996236759 163 SLVNGGTLAI----YMGVKRLGKIITQ 185
Cdd:PRK05787 138 LLKNGRKVIMlpdpRFGPKEIAAELLE 164
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
12-138 4.67e-12

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 64.45  E-value: 4.67e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  12 IGAGPGNPNYLTKKAERLIREAEVILY-------DRLVNPLILQYANLTTEIIDV----GKKPYAKHIQQEKINDCIVEA 80
Cdd:cd11645    1 VGVGPGDPELLTLKAVRILKEADVIFVpvskggeGSAALIIAAALLIPDKEIIPLefpmTKDREELEEAWDEAAEEIAEE 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 996236759  81 ARRYNKVVRLKGGDPAI---FGRVQEEVDtlnNFNIAFEIVPGVTSASAAVATLQTGLTMR 138
Cdd:cd11645   81 LKEGKDVAFLTLGDPSLystFSYLLERLR---APGVEVEIIPGITSFSAAAARLGIPLAEG 138
cobJ_cbiH TIGR01466
precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, ...
9-131 4.83e-12

precorrin-3B C17-methyltransferase; This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273641 [Multi-domain]  Cd Length: 239  Bit Score: 64.63  E-value: 4.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759    9 VYLIGAGPGNPNYLTKKAERLIREAEVI----LYDRLVNPLILQyanltTEIIDVGKKpyaKHIQQEKIndcIVEAARRY 84
Cdd:TIGR01466   1 LYVVGIGPGAEELMTPEAKEALAEADVIvgykTYLDLIEDLIPG-----KEVVTSGMR---EEIARAEL---AIELAAEG 69
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 996236759   85 NKVVRLKGGDPAIFGR---VQEEVDTLNNfNIAFEIVPGVTSASAAVATL 131
Cdd:TIGR01466  70 RTVALVSSGDPGIYGMaalVFEALEKKGA-EVDIEVIPGITAASAAASLL 118
Precorrin-6Y-MT cd11644
Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also ...
12-127 8.24e-12

Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.


Pssm-ID: 381171 [Multi-domain]  Cd Length: 198  Bit Score: 63.28  E-value: 8.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  12 IGAGPGNPNYLTKKAERLIREAEVIL-YDRLVNPLilqyANLTTEIIdvgkkpyakHIQQEKINDCIVEAARRYNKVVRL 90
Cdd:cd11644    1 IGIGPGGPEYLTPEAREAIEEADVVIgAKRLLELF----PDLGAEKI---------PLPSEDIAELLEEIAEAGKRVVVL 67
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 996236759  91 KGGDPAIFGRVQEEVDTLNNFNIafEIVPGVTSASAA 127
Cdd:cd11644   68 ASGDPGFYGIGKTLLRRLGGEEV--EVIPGISSVQLA 102
CobL COG2241
Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part ...
8-127 1.06e-10

Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441842 [Multi-domain]  Cd Length: 207  Bit Score: 60.16  E-value: 1.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   8 KVYLIGAGPGNPNYLTKKAERLIREAEVIL-YDRLVNplilQYANLTTEIIDVGkKPYAKHIQQekindciVEAARRYNK 86
Cdd:COG2241    3 WLTVVGIGPGGPDGLTPAAREAIAEADVVVgGKRHLE----LFPDLGAERIVWP-SPLSELLEE-------LLALLRGRR 70
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 996236759  87 VVRLKGGDPAIFG---RVQEEVDtlnnfNIAFEIVPGVTSASAA 127
Cdd:COG2241   71 VVVLASGDPLFYGigaTLARHLP-----AEEVRVIPGISSLQLA 109
Precorrin-6A-synthase cd11643
Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway ...
11-159 1.26e-06

Precorrin-6A synthase (also named CobF); Precorrin-6A synthase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model represents CobF, the precorrin-6A synthase, an enzyme specific to the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, CobF catalyzes the removal of the extruded acyl group in the subsequent step, and the addition of a methyl group at C-1. The product of this reaction is precorrin-6A, which gets reduced by an NADH-dependent reductase to yield precorrin-6B. This family includes enzymes in GC-rich Gram-positive bacteria, alpha proteobacteria and Pseudomonas-related species.


Pssm-ID: 381170  Cd Length: 244  Bit Score: 48.65  E-value: 1.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  11 LIGAGPGNPNYLTKKAERLIREAEVIlydrlvnpLIL-------QYANLTTEIID--VGKKPYAkhiqqekindcIVEA- 80
Cdd:cd11643    1 LIGIGPGDPDHLTLQAIEALNRVDVF--------FVLdkgeeksDLAALRREICErhLGDRPYR-----------VVEFp 61
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  81 -------ARRYNKVVR--------------------------LKGGDPA-------IFGRVQEEvdtlnNFNIAFEIVPG 120
Cdd:cd11643   62 dperdrsPADYRAAVAdwhdaraalwedaiaeelpeggtgafLVWGDPSlydstlrILDRLRAG-----RVALEVEVIPG 136
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 996236759 121 VTSASAAVAtlQTGLTMRTVAKSVTFSTG-----HFKDSEENEV 159
Cdd:cd11643  137 ISSVQALAA--RHRIPLNRIGEPVHITTGrrlaeGGPAGVDNVV 178
cbiH PRK15478
precorrin-3B C(17)-methyltransferase;
9-131 5.74e-06

precorrin-3B C(17)-methyltransferase;


Pssm-ID: 185375 [Multi-domain]  Cd Length: 241  Bit Score: 46.80  E-value: 5.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   9 VYLIGAGPGNPNYLTKKAERLIREAEVIL----YDRLVNPLilqyanltteiidVGKKPYAKHIQQEKINDC--IVEAAR 82
Cdd:PRK15478   2 LSVIGIGPGSQAMMTMEAIEALQAAEIVVgyktYTHLVKAF-------------TGDKQVIKTGMCKEIERCqaAIELAQ 68
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 996236759  83 RYNKVVRLKGGDPAIFGR--VQEEVDTLNNFNIAFEIVPGVTSASAAVATL 131
Cdd:PRK15478  69 AGHNVALISSGDAGIYGMagLVLELVSKQKLDVEVRLIPGMTASIAAASLL 119
DHP5_DphB cd11647
diphthine methyl ester synthase and diphthine synthase; Eukaryotic diphthine methyl ester ...
10-152 6.23e-06

diphthine methyl ester synthase and diphthine synthase; Eukaryotic diphthine methyl ester synthase (DHP5) and archaeal diphthamide synthase (DphB) participate in the second step of the biosynthetic pathway of diphthamide. The eukaryotic enzyme catalyzes four methylations of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine methyl ester; the archaeal enzyme, catalyzes only 3 methylations, producing diphthine. Diphtheria toxin ADP-ribosylates diphthamide leading to inhibition of protein synthesis in the eukaryotic host cells.


Pssm-ID: 381174  Cd Length: 241  Bit Score: 46.64  E-value: 6.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  10 YLIGAGPGNPNYLTKKAERLIREAEVILYDRLVNPlilqyanLTTEIIDVGKKPYAKHIQQ------EKINDCIVEAARR 83
Cdd:cd11647    3 YLIGLGLGDEKDITLEGLEALKKADKVYLEAYTSI-------LPGSKLEELEKLIGKKIILldredlEEESEEILEEAKK 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  84 YNkVVRLKGGDP-------AIFGRVQEEvdtlnnfNIAFEIVPGVTSASAAVATlqTGLTM----RTVakSVTFSTGHFK 152
Cdd:cd11647   76 KD-VALLVPGDPliatthiDLRLEAKKR-------GIKVKVIHNASILSAAGST--SGLQLykfgRTV--TIPFPEENYK 143
PRK05990 PRK05990
precorrin-2 C(20)-methyltransferase; Reviewed
7-144 5.76e-05

precorrin-2 C(20)-methyltransferase; Reviewed


Pssm-ID: 180341  Cd Length: 241  Bit Score: 43.82  E-value: 5.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759   7 GKVYLIGAGPGNPNYLTKKAERLIREAEVILY--------------------DRLVNPLI-----------LQYANLTTE 55
Cdd:PRK05990   3 GRLIGLGVGPGDPELLTLKALRLLQAAPVVAYfvakgkkgnafgiveahlspGQTLLPLVypvtteilpppLCYETVIAD 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 996236759  56 IIDVGKKPYAKHIqqekindcivEAARrynKVVRLKGGDPAIFG-------RVQEEVDTlnnfniafEIVPGVTSASAAV 128
Cdd:PRK05990  83 FYDTSAEAVAAHL----------DAGR---DVAVICEGDPFFYGsymylhdRLAPRYET--------EVIPGVCSMLGCW 141
                        170
                 ....*....|....*.
gi 996236759 129 ATLQTGLTMRTVAKSV 144
Cdd:PRK05990 142 SVLGAPLVYRNQSLSV 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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