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Conserved domains on  [gi|921372130|emb|CTU05978|]
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TciB/TerA-like protein [Escherichia coli]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF3927 super family cl16070
Protein of unknown function (DUF3927); This family of proteins is functionally uncharacterized. ...
3-51 4.34e-06

Protein of unknown function (DUF3927); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 50 amino acids in length. There is a conserved SVL sequence motif. There is a single completely conserved residue D that may be functionally important.


The actual alignment was detected with superfamily member pfam13064:

Pssm-ID: 372454  Cd Length: 53  Bit Score: 38.83  E-value: 4.34e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 921372130   3 VKLRLTVAALLLFLVVMVDFTSRIMSVLADGVLVCGIMVLLWPVIKRNS 51
Cdd:pfam13064  2 IKAKLILALCFCELHCLVDFSSRILSVLADGALVAGAVTLAFPILKKAS 50
 
Name Accession Description Interval E-value
DUF3927 pfam13064
Protein of unknown function (DUF3927); This family of proteins is functionally uncharacterized. ...
3-51 4.34e-06

Protein of unknown function (DUF3927); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 50 amino acids in length. There is a conserved SVL sequence motif. There is a single completely conserved residue D that may be functionally important.


Pssm-ID: 372454  Cd Length: 53  Bit Score: 38.83  E-value: 4.34e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 921372130   3 VKLRLTVAALLLFLVVMVDFTSRIMSVLADGVLVCGIMVLLWPVIKRNS 51
Cdd:pfam13064  2 IKAKLILALCFCELHCLVDFSSRILSVLADGALVAGAVTLAFPILKKAS 50
 
Name Accession Description Interval E-value
DUF3927 pfam13064
Protein of unknown function (DUF3927); This family of proteins is functionally uncharacterized. ...
3-51 4.34e-06

Protein of unknown function (DUF3927); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 50 amino acids in length. There is a conserved SVL sequence motif. There is a single completely conserved residue D that may be functionally important.


Pssm-ID: 372454  Cd Length: 53  Bit Score: 38.83  E-value: 4.34e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 921372130   3 VKLRLTVAALLLFLVVMVDFTSRIMSVLADGVLVCGIMVLLWPVIKRNS 51
Cdd:pfam13064  2 IKAKLILALCFCELHCLVDFSSRILSVLADGALVAGAVTLAFPILKKAS 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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