|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-529 |
0e+00 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 1024.64 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLH 80
Cdd:PRK15134 1 MTQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGG 160
Cdd:PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQR 240
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 241 ADTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAPLLEVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGE 320
Cdd:PRK15134 241 AATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 321 SGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSGAQ 400
Cdd:PRK15134 321 SGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 401 REQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYI 480
Cdd:PRK15134 401 REQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYL 480
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 804913277 481 FISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLALS 529
Cdd:PRK15134 481 FISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLALS 529
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-527 |
0e+00 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 950.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtPPAVYLSGDIRFHGESLLH 80
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLP-DPAAHPSGSILFDGQDLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGG 160
Cdd:COG4172 81 LSERELRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPERRLDAYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQR 240
Cdd:COG4172 161 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 241 ADTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAPLLEVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGE 320
Cdd:COG4172 241 TAELFAAPQHPYTRKLLAAEPRGDPRPVPPDAPPLLEARDLKVWFPIKRGLFRRTVGHVKAVDGVSLTLRRGETLGLVGE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 321 SGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSGAQ 400
Cdd:COG4172 321 SGSGKSTLGLALLRLIPSEGEIRFDGQDLDGLSRRALRPLRRRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHGPGLSAAE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 401 REQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYI 480
Cdd:COG4172 401 RRARVAEALEEVGLDPAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYL 480
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 804913277 481 FISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:COG4172 481 FISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAPQHPYTRALLA 527
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-527 |
0e+00 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 614.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQQQhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVylSGDIRFHGESLLHAS 82
Cdd:COG1123 2 TPLLEVRDLSVRYPGGD--VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGRI--SGEVLLDGRDLLELS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQtlrgVRGNKIAMIFQEPMVSLNPLhTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQasqRLRDYPHQLSGGER 162
Cdd:COG1123 78 EA----LRGRRIGMVFQDPMTQLNPV-TVGDQIAEALEN-LGLSRAEARARVLELLEAVGLER---RLDRYPHQLSGGQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRAD 242
Cdd:COG1123 149 QRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPE 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 243 TLLSAPTHPYTQKLLNSEPtGDPVPLPAGQAPLLEVDKLRVAFPIRKG----ILKRvvdhnvvvnnISFTLHPGETLGLV 318
Cdd:COG1123 229 EILAAPQALAAVPRLGAAR-GRAAPAAAAAEPLLEVRNLSKRYPVRGKggvrAVDD----------VSLTLRRGETLGLV 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 319 GESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQpTLS 397
Cdd:COG1123 298 GESGSGKSTLARLLLGLLRpTSGSILFDGKDLTKLSRRSLRELRRRVQMVFQDPYSSLNPRMTVGDIIAEPLRLHG-LLS 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 398 GAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRL 477
Cdd:COG1123 377 RAERRERVAELLERVGLPPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGL 456
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 804913277 478 AYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:COG1123 457 TYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQHPYTRALLA 506
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-527 |
2.66e-164 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 480.12 E-value: 2.66e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGD--IRFHGESLL 79
Cdd:PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKmlLRRRSRQVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 80 HASEQT---LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQ 156
Cdd:PRK10261 89 ELSEQSaaqMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 237 ENQRADTLLSAPTHPYTQKLLNSEP-----TGDPVP-------LPAGQA--------------PLLEVDKLRVAFPIRKG 290
Cdd:PRK10261 249 ETGSVEQIFHAPQHPYTRALLAAVPqlgamKGLDYPrrfplisLEHPAKqeppieqdtvvdgePILQVRNLVTRFPLRSG 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 291 ILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIRS-EGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQ 369
Cdd:PRK10261 329 LLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESqGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 370 DPNSSLNPRLNVLQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIIL 449
Cdd:PRK10261 409 DPYASLDPRQTVGDSIMEPLRVHG-LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIA 487
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 450 DEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:PRK10261 488 DEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-265 |
1.50e-135 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 395.19 E-value: 1.50e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVylSGDIRFHGESLLHASEQ 84
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPGIT--SGEILFDGEDLLKLSEK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGGERQR 164
Cdd:COG0444 79 ELRKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYPHELSGGMRQR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTL 244
Cdd:COG0444 159 VMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEEL 238
|
250 260
....*....|....*....|.
gi 804913277 245 LSAPTHPYTQKLLNSEPTGDP 265
Cdd:COG0444 239 FENPRHPYTRALLSSIPRLDP 259
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
269-527 |
6.83e-117 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 347.87 E-value: 6.83e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 269 PAGQAPLLEVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQ 347
Cdd:COG4608 1 AAMAEPLLEVRDLKKHFPVRGGLFGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEpTSGEILFDGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 348 SLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFS 427
Cdd:COG4608 81 DITGLSGRELRPLRRRMQMVFQDPYASLNPRMTVGDIIAEPLRIHG-LASKAERRERVAELLELVGLRPEHADRYPHEFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 428 GGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQ 507
Cdd:COG4608 160 GGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLGKIVEI 239
|
250 260
....*....|....*....|
gi 804913277 508 GQCERVFTAPQQAYTRQLLA 527
Cdd:COG4608 240 APRDELYARPLHPYTQALLS 259
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
275-527 |
2.54e-107 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 323.16 E-value: 2.54e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFPIRKGILK--RVvdhnvvvnnISFTLHPGETLGLVGESGSGKSTTGLALLRLI----RSEGRIVFDGQS 348
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKavDG---------VSFDVRRGETLGLVGESGSGKSTLARAILGLLpppgITSGEILFDGED 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 349 LDTLNRRQLLPVRHR-IQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPtLSGAQREQQVKAVMMEVGL-DPETR-HRYPAE 425
Cdd:COG0444 72 LLKLSEKELRKIRGReIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGG-LSKAEARERAIELLERVGLpDPERRlDRYPHE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 426 FSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:COG0444 151 LSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIV 230
|
250 260
....*....|....*....|..
gi 804913277 506 EQGQCERVFTAPQQAYTRQLLA 527
Cdd:COG0444 231 EEGPVEELFENPRHPYTRALLS 252
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-237 |
8.55e-105 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 313.29 E-value: 8.55e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASE 83
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLkPT------SGSIIFDGKDLLKLSR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRgVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIgCLDRVGIRQASQRLRDYPHQLSGGERQ 163
Cdd:cd03257 75 RLRK-IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-LLLLVGVGLPEEVLNRYPHELSGGQRQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
275-508 |
5.98e-102 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 305.97 E-value: 5.98e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFPIRKGILKrvvdhnvVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLN 353
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVK-------ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKpTSGSIIFDGKDLLKLS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQR 433
Cdd:cd03257 74 RRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 434 IAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-265 |
3.97e-96 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 301.05 E-value: 3.97e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQ-QHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESL 78
Cdd:COG1123 256 AAEPLLEVRNLSKRYPVRgKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLrPT------SGSILFDGKDL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 79 LHASEQTLRGVRGnKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASqrLRDYPHQLS 158
Cdd:COG1123 330 TKLSRRSLRELRR-RVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPPDL--ADRYPHELS 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVEN 238
Cdd:COG1123 407 GGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVED 486
|
250 260
....*....|....*....|....*..
gi 804913277 239 QRADTLLSAPTHPYTQKLLNSEPTGDP 265
Cdd:COG1123 487 GPTEEVFANPQHPYTRALLAAVPSLDP 513
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-264 |
4.51e-94 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 289.70 E-value: 4.51e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVylSGDIRFHGESLLH 80
Cdd:PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRI--GGSATFNGREILN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGG 160
Cdd:PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQR 240
Cdd:PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
250 260
....*....|....*....|....
gi 804913277 241 ADTLLSAPTHPYTQKLLNSEPTGD 264
Cdd:PRK09473 246 ARDVFYQPSHPYSIGLLNAVPRLD 269
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
275-529 |
1.58e-92 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 282.46 E-value: 1.58e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFPIRKG---ILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLd 350
Cdd:COG1124 1 MLEVRNLSVSYGQGGRrvpVLKD----------VSLEVAPGESFGLVGESGSGKSTLLRALAGLERpWSGEVTFDGRPV- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 351 tlNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHqptlSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQ 430
Cdd:COG1124 70 --TRRRRKAFRRRVQMVFQDPYASLHPRHTVDRILAEPLRIH----GLPDREERIAELLEQVGLPPSFLDRYPHQLSGGQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 431 RQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQC 510
Cdd:COG1124 144 RQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTV 223
|
250
....*....|....*....
gi 804913277 511 ERVFTAPQQAYTRQLLALS 529
Cdd:COG1124 224 ADLLAGPKHPYTRELLAAS 242
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-265 |
8.66e-91 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 281.24 E-value: 8.66e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGF--------RQQQHVRpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDI 71
Cdd:COG4608 3 MAEPLLEVRDLKKHFpvrgglfgRTVGVVK-AVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEePT------SGEI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 72 RFHGESLLHASEQTLRGVRgNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRqaSQRLR 151
Cdd:COG4608 76 LFDGQDITGLSGRELRPLR-RRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLR--PEHAD 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQ 231
Cdd:COG4608 153 RYPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMY 232
|
250 260 270
....*....|....*....|....*....|....
gi 804913277 232 HGKCVENQRADTLLSAPTHPYTQKLLNSEPTGDP 265
Cdd:COG4608 233 LGKIVEIAPRDELYARPLHPYTQALLSAVPVPDP 266
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-259 |
2.35e-87 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 269.37 E-value: 2.35e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtpPAvylSGDIRFHGESLLHASEQ 84
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLER--PW---SGEVTFDGRPVTRRRRK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGvrgnKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMigcLDRVGIrqaSQRLRD-YPHQLSGGERQ 163
Cdd:COG1124 76 AFRR----RVQMVFQDPYASLHPRHTVDRILAEPLRIHGLPDREERIAEL---LEQVGL---PPSFLDrYPHQLSGGQRQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADT 243
Cdd:COG1124 146 RVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVAD 225
|
250
....*....|....*.
gi 804913277 244 LLSAPTHPYTQKLLNS 259
Cdd:COG1124 226 LLAGPKHPYTRELLAA 241
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-264 |
4.07e-87 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 278.11 E-value: 4.07e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGF--------RQQQHVRpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavylSGDIRFHG 75
Cdd:COG4172 274 PLLEARDLKVWFpikrglfrRTVGHVK-AVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPS------EGEIRFDG 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 ESLLHASEQTLRGVRgNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR-GMRREAARAEMIGCLDRVGIRQASqRLRdYP 154
Cdd:COG4172 347 QDLDGLSRRALRPLR-RRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHGpGLSAAERRARVAEALEEVGLDPAA-RHR-YP 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:COG4172 424 HEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGK 503
|
250 260 270
....*....|....*....|....*....|
gi 804913277 235 CVENQRADTLLSAPTHPYTQKLLNSEPTGD 264
Cdd:COG4172 504 VVEQGPTEQVFDAPQHPYTRALLAAAPLLE 533
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
268-527 |
1.12e-85 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 268.11 E-value: 1.12e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 268 LPAGQAPLLEVDKLRVAFPIR--KGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVF 344
Cdd:PRK15079 1 VTEGKKVLLEVADLKVHFDIKdgKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKaTDGEVAW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 345 DGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSGAQREQQVKAVMMEVGLDPETRHRYPA 424
Cdd:PRK15079 81 LGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 425 EFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240
|
250 260
....*....|....*....|...
gi 804913277 505 VEQGQCERVFTAPQQAYTRQLLA 527
Cdd:PRK15079 241 VELGTYDEVYHNPLHPYTKALMS 263
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
272-527 |
5.43e-84 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 263.36 E-value: 5.43e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 272 QAPLLEVDKLRVAFPIRKGILKrVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGlALLRLIR--SEGRIVFDGQSL 349
Cdd:PRK11308 2 QQPLLQAIDLKKHYPVKRGLFK-PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLA-RLLTMIEtpTGGELYYQGQDL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 350 DTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGG 429
Cdd:PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-SLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 430 QRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQ 509
Cdd:PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238
|
250
....*....|....*...
gi 804913277 510 CERVFTAPQQAYTRQLLA 527
Cdd:PRK11308 239 KEQIFNNPRHPYTQALLS 256
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
274-526 |
2.35e-81 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 254.38 E-value: 2.35e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 274 PLLEVDKLRVAFPIRKGILKRVVDHNVVVnnISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQS 348
Cdd:COG4167 3 ALLEVRNLSKTFKYRTGLFRRQQFEAVKP--VSFTLEAGQTLAIIGENGSGKST----LAKMLagiiePTSGEILINGHK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 349 LDTLNRRQllpvR-HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFS 427
Cdd:COG4167 77 LEYGDYKY----RcKHIRMIFQDPNTSLNPRLNIGQILEEPLRLNT-DLTAEEREERIFATLRLVGLLPEHANFYPHMLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 428 GGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQ 507
Cdd:COG4167 152 SGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEY 231
|
250
....*....|....*....
gi 804913277 508 GQCERVFTAPQQAYTRQLL 526
Cdd:COG4167 232 GKTAEVFANPQHEVTKRLI 250
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
5-261 |
3.94e-81 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 256.21 E-value: 3.94e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVyLSGDIRFHGESLLHASEQ 84
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRV-MAEKLEFNGQDLQRISEK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGGERQR 164
Cdd:PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTL 244
Cdd:PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
250
....*....|....*..
gi 804913277 245 LSAPTHPYTQKLLNSEP 261
Cdd:PRK11022 242 FRAPRHPYTQALLRALP 258
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
15-265 |
4.89e-70 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 227.15 E-value: 4.89e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 15 FRQQQHVRpVVNAISLQVNAGETLALVGESGSGKSVTAlsilRLL-----PTppavylSGDIRFHGESLLHASEQTLRGV 89
Cdd:PRK11308 22 FKPERLVK-ALDGVSFTLERGKTLAVVGESGCGKSTLA----RLLtmietPT------GGELYYQGQDLLKADPEAQKLL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 90 RgNKIAMIFQEPMVSLNPLHTLEKQLYEVL----SLHRGMRREAARAEMigclDRVGIR-QASQRlrdYPHQLSGGERQR 164
Cdd:PRK11308 91 R-QKIQIVFQNPYGSLNPRKKVGQILEEPLlintSLSAAERREKALAMM----AKVGLRpEHYDR---YPHMFSGGQRQR 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTL 244
Cdd:PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242
|
250 260
....*....|....*....|.
gi 804913277 245 LSAPTHPYTQKLLNSEPTGDP 265
Cdd:PRK11308 243 FNNPRHPYTQALLSATPRLNP 263
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
4-277 |
2.77e-69 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 225.55 E-value: 2.77e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLlpTPPAVYLSGD-IRFHGESLLHAS 82
Cdd:COG4170 2 PLLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGI--TKDNWHVTADrFRWNGIDLLKLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVL--SLHRGM---RREAARAEMIGCLDRVGIRQASQRLRDYPHQL 157
Cdd:COG4170 80 PRERRKIIGREIAMIFQEPSSCLDPSAKIGDQLIEAIpsWTFKGKwwqRFKWRKKRAIELLHRVGIKDHKDIMNSYPHEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:COG4170 160 TEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVE 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 804913277 238 NQRADTLLSAPTHPYTQKLLNSEP-TGDPVP-------LPaGQAPLLE 277
Cdd:COG4170 240 SGPTEQILKSPHHPYTKALLRSMPdFRQPLPhksrlntLP-GSIPPLQ 286
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
270-526 |
6.29e-65 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 214.20 E-value: 6.29e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 270 AGQAPLLEVDKLRVAFPIRKGILkrvvdhnVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRI----VFD 345
Cdd:PRK09473 7 QQADALLDVKDLRVTFSTPDGDV-------TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIggsaTFN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 346 GQSLDTLNRRQLLPVR-HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQpTLSGAQR-EQQVK---AVMMevgldPETRH 420
Cdd:PRK09473 80 GREILNLPEKELNKLRaEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-GMSKAEAfEESVRmldAVKM-----PEARK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 421 R---YPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVI 497
Cdd:PRK09473 154 RmkmYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL 233
|
250 260
....*....|....*....|....*....
gi 804913277 498 VLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK09473 234 VMYAGRTMEYGNARDVFYQPSHPYSIGLL 262
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
4-279 |
6.72e-64 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 211.49 E-value: 6.72e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFR---------QQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFH 74
Cdd:PRK15079 7 VLLEVADLKVHFDikdgkqwfwQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT-----DGEVAWL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 75 GESLLHASEQTLRGVRgNKIAMIFQEPMVSLNPLHTLEKQLYEVL-SLHRGMRREAARAEMIGCLDRVGIRqaSQRLRDY 153
Cdd:PRK15079 82 GKDLLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLrTYHPKLSRQEVKDRVKAMMLKVGLL--PNLINRY 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHG 233
Cdd:PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLG 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 804913277 234 KCVENQRADTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAPLLEVD 279
Cdd:PRK15079 239 HAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLERNKTIQLLEGE 284
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
6-257 |
2.23e-61 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 202.24 E-value: 2.23e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVgfrqqQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtppavylSGDIRFHGESLLHASEQT 85
Cdd:PRK10418 5 IELRNIAL-----QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-------AGVRQTAGRVLLDGKPVA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLslhRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGGERQRV 165
Cdd:PRK10418 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETC---LALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 166 MIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLL 245
Cdd:PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229
|
250
....*....|..
gi 804913277 246 SAPTHPYTQKLL 257
Cdd:PRK10418 230 NAPKHAVTRSLV 241
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
3-259 |
2.44e-60 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 199.68 E-value: 2.44e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFR-----QQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTAlsilRLLP--TPPAvylSGDIRFHG 75
Cdd:COG4167 2 SALLEVRNLSKTFKyrtglFRRQQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLA----KMLAgiIEPT---SGEILING 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 ESLLHASEQTlrgvRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRrEAARAEMI-GCLDRVGIrqasqrLRD-- 152
Cdd:COG4167 75 HKLEYGDYKY----RCKHIRMIFQDPNTSLNPRLNIGQILEEPLRLNTDLT-AEEREERIfATLRLVGL------LPEha 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 153 --YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVM 230
Cdd:COG4167 144 nfYPHMLSSGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVM 223
|
250 260
....*....|....*....|....*....
gi 804913277 231 QHGKCVENQRADTLLSAPTHPYTQKLLNS 259
Cdd:COG4167 224 HQGEVVEYGKTAEVFANPQHEVTKRLIES 252
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
305-527 |
2.63e-59 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 199.53 E-value: 2.63e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI----R-SEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:COG1135 24 VSLTIEKGEIFGIIGYSGAGKST----LIRCInlleRpTSGSVLVDGVDLTALSERELRAARRKIGMIFQHFN--LLSSR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD-K 458
Cdd:COG1135 98 TVAENVALPLEIAG--VPKAEIRKRVAELLELVGLS-DKADAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDpE 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 459 TVQaQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:COG1135 175 TTR-SILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVFANPQSELTRRFLP 242
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
275-527 |
1.68e-58 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 195.02 E-value: 1.68e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFpiRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLN 353
Cdd:TIGR02769 2 LLEVRDVTHTY--RTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKpAQGTVSFRGQDLYQLD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRvHQPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQR 433
Cdd:TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLR-HLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 434 IAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERV 513
Cdd:TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238
|
250
....*....|....
gi 804913277 514 FTAPQQAyTRQLLA 527
Cdd:TIGR02769 239 LSFKHPA-GRNLQS 251
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
305-506 |
3.37e-57 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 191.82 E-value: 3.37e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ 383
Cdd:PRK10419 31 VSLSLKSGETVALLGRSGCGKSTLARLLVGLESpSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVRE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRvHQPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:PRK10419 111 IIREPLR-HLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 804913277 464 ILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVE 506
Cdd:PRK10419 190 VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
305-518 |
4.51e-56 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 187.40 E-value: 4.51e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:cd03258 24 VSLSVPKGEIFGIIGRSGAGKST----LIRCINglerpTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFN--LLSSR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03258 98 TVFENVALPLEIAG--VPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:cd03258 175 TTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
272-508 |
1.96e-55 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 185.95 E-value: 1.96e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 272 QAPLLEVDKLRVAF---PIRKGIlkrvvdhnvvvnniSFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIV 343
Cdd:COG1127 2 SEPMIEVRNLTKSFgdrVVLDGV--------------SLDVPRGEILAIIGGSGSGKSV----LLKLIigllrPDSGEIL 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 344 FDGQSLDTLNRRQLLPVRHRIQVVFQDP---NSslnprLNVLQIIEEGLRVHqPTLSGAQREQQVKAVMMEVGLdPETRH 420
Cdd:COG1127 64 VDGQDITGLSEKELYELRRRIGMLFQGGalfDS-----LTVFENVAFPLREH-TDLSEAEIRELVLEKLELVGL-PGAAD 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 421 RYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLR 500
Cdd:COG1127 137 KMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLA 216
|
....*...
gi 804913277 501 QGEVVEQG 508
Cdd:COG1127 217 DGKIIAEG 224
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-277 |
6.54e-55 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 187.70 E-value: 6.54e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLlpTPPAVYLSGD-IRFHGESLLHAS 82
Cdd:PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV--TKDNWRVTADrMRFDDIDLLRLS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVL--SLHRG---MRREAARAEMIGCLDRVGIRQASQRLRDYPHQL 157
Cdd:PRK15093 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIpgWTYKGrwwQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 804913277 238 NQRADTLLSAPTHPYTQKLLNSEPT-GDPVP-------LPaGQAPLLE 277
Cdd:PRK15093 240 TAPSKELVTTPHHPYTQALIRAIPDfGSAMPhksrlntLP-GAIPLLE 286
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
275-526 |
8.21e-55 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 187.26 E-value: 8.21e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFPIRKGILKrvvdhnvVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRIV-----FDGQSL 349
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFR-------AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMaekleFNGQDL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 350 DTLN---RRQLlpVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQptlSGAQREQQVKAV--MMEVGL-DPETR-HRY 422
Cdd:PRK11022 76 QRISekeRRNL--VGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ---GGNKKTRRQRAIdlLNQVGIpDPASRlDVY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 423 PAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQG 502
Cdd:PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG 230
|
250 260
....*....|....*....|....
gi 804913277 503 EVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK11022 231 QVVETGKAHDIFRAPRHPYTQALL 254
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
275-527 |
3.93e-54 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 183.84 E-value: 3.93e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFPIRKGILKRVVDHNVVVnnISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSL---D 350
Cdd:PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKP--LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEpTSGELLIDDHPLhfgD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 351 TLNRRQllpvrhRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQ 430
Cdd:PRK15112 82 YSYRSQ------RIRMIFQDPSTSLNPRQRISQILDFPLRLNT-DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 431 RQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQC 510
Cdd:PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234
|
250
....*....|....*..
gi 804913277 511 ERVFTAPQQAYTRQLLA 527
Cdd:PRK15112 235 ADVLASPLHELTKRLIA 251
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-240 |
1.84e-53 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 180.24 E-value: 1.84e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLL--PTppavylSGDIRFHGESLLH 80
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKS-TLLNILGGLdrPT------SGEVLIDGQDISS 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRGVRGNKIAMIFQEPmvslnplhtlekQLYEVLS---------LHRGMRREAARAEMIGCLDRVGIrqaSQRLR 151
Cdd:COG1136 75 LSERELARLRRRHIGFVFQFF------------NLLPELTalenvalplLLAGVSRKERRERARELLERVGL---GDRLD 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIvKKLADSVAVMQ 231
Cdd:COG1136 140 HRPSQLSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPEL-AARADRVIRLR 218
|
....*....
gi 804913277 232 HGKCVENQR 240
Cdd:COG1136 219 DGRIVSDER 227
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
305-518 |
3.30e-51 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 174.61 E-value: 3.30e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDpnSSLNPRL 379
Cdd:cd03261 19 VDLDVRRGEILAIIGPSGSGKST----LLRLIvgllrPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS--GALFDSL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLdPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03261 93 TVFENVAFPLREHT-RLSEEEIREIVLEKLEAVGL-RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:cd03261 171 ASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD 229
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
273-507 |
5.03e-51 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 174.08 E-value: 5.03e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRVAFPIRKG---ILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRLI----R-SEGRIVF 344
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGevtALRG----------VSLSIEAGEFVAIVGPSGSGKST----LLNILggldRpTSGEVLI 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 345 DGQSLDTLNRRQLLPVR-HRIQVVFQDPNssLNPRLNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYP 423
Cdd:COG1136 68 DGQDISSLSERELARLRrRHIGFVFQFFN--LLPELTALENVALPLLLAG--VSRKERRERARELLERVGLG-DRLDHRP 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 424 AEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVrALCHQVIVLRQGE 503
Cdd:COG1136 143 SQLSGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELA-ARADRVIRLRDGR 221
|
....
gi 804913277 504 VVEQ 507
Cdd:COG1136 222 IVSD 225
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-265 |
1.26e-50 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 183.13 E-value: 1.26e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGF--------RQQQHVRPVVNaISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHG 75
Cdd:PRK10261 312 PILQVRNLVTRFplrsgllnRVTREVHAVEK-VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ-----GGEIIFNG 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 ESLLHASEQTLRGVRGNkIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRqaSQRLRDYPH 155
Cdd:PRK10261 386 QRIDTLSPGKLQALRRD-IQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL--PEHAWRYPH 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKC 235
Cdd:PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542
|
250 260 270
....*....|....*....|....*....|
gi 804913277 236 VENQRADTLLSAPTHPYTQKLLNSEPTGDP 265
Cdd:PRK10261 543 VEIGPRRAVFENPQHPYTRKLMAAVPVADP 572
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
8-265 |
1.44e-50 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 176.42 E-value: 1.44e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGESLLHAS 82
Cdd:COG1135 4 LENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKS----TLIRCInllerPT------SGSVLVDGVDLTALS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGVRGnKIAMIFQepmvSLNPLHT----------LEkqlyevlslHRGMRREAAR---AEMigcLDRVGIrqaSQR 149
Cdd:COG1135 74 ERELRAARR-KIGMIFQ----HFNLLSSrtvaenvalpLE---------IAGVPKAEIRkrvAEL---LELVGL---SDK 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 150 LRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAV 229
Cdd:COG1135 134 ADAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAV 213
|
250 260 270
....*....|....*....|....*....|....*.
gi 804913277 230 MQHGKCVENQRADTLLSAPTHPYTQKLLNSEPTGDP 265
Cdd:COG1135 214 LENGRIVEQGPVLDVFANPQSELTRRFLPTVLNDEL 249
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
276-518 |
3.14e-50 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 172.13 E-value: 3.14e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 276 LEVDKLRVAFPIRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLD 350
Cdd:COG1122 1 IELENLSFSYPGGTPALDD----------VSLSIEKGEFVAIIGPNGSGKST----LLRLLNgllkpTSGEVLVDGKDIT 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 351 TLNRRQLlpvRHRIQVVFQDPNSslnprlnvlQIIEE--------GLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRY 422
Cdd:COG1122 67 KKNLREL---RRKVGLVFQNPDD---------QLFAPtveedvafGPENLG--LPREEIRERVEEALELVGLE-HLADRP 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 423 PAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQG 502
Cdd:COG1122 132 PHELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGK-TVIIVTHDLDLVAELADRVIVLDDG 210
|
250
....*....|....*.
gi 804913277 503 EVVEQGQCERVFTAPQ 518
Cdd:COG1122 211 RIVADGTPREVFSDYE 226
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-234 |
4.21e-49 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 168.44 E-value: 4.21e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQT 85
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKS-TLLNILGGLDRPT----SGEVRVDGTDISKLSEKE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGVRGNKIAMIFQEpmvslnplHTLEKQL--YEVLSL---HRGMRREAARAEMIGCLDRVGIRQasqRLRDYPHQLSGG 160
Cdd:cd03255 76 LAAFRRRHIGFVFQS--------FNLLPDLtaLENVELpllLAGVPKKERRERAEELLERVGLGD---RLNHYPSELSGG 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVkKLADSVAVMQHGK 234
Cdd:cd03255 145 QQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGK 217
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-505 |
6.93e-48 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 173.28 E-value: 6.93e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFrqqqhvrPVVNA---ISLQVNAGETLALVGESGSGKSvTALSILrllptppA-VYL--SGDIRFHG 75
Cdd:COG1129 1 AEPLLEMRGISKSF-------GGVKAldgVSLELRPGEVHALLGENGAGKS-TLMKIL-------SgVYQpdSGEILLDG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 EsllhasEQTLRGVR---GNKIAMIFQEpmvsLNPLHTL----------EKQLYEVLSlHRGMRREAARAemigcLDRVG 142
Cdd:COG1129 66 E------PVRFRSPRdaqAAGIAIIHQE----LNLVPNLsvaeniflgrEPRRGGLID-WRAMRRRAREL-----LARLG 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 143 IR-QASQRLRDyphqLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVK 221
Cdd:COG1129 130 LDiDPDTPVGD----LSVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRL-KAQGVAIIYISHRLDEVF 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 222 KLADSVAVMQHGKCVEnqradtllSAPTHPYTQKLLNSEPTGD------PVPLPAGQAPLLEVDKLRvafpiRKGILKrv 295
Cdd:COG1129 205 EIADRVTVLRDGRLVG--------TGPVAELTEDELVRLMVGReledlfPKRAAAPGEVVLEVEGLS-----VGGVVR-- 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 296 vdhnvvvnNISFTLHPGETLGLVGESGSGKSttglALLRLI-----RSEGRIVFDGQSLDTLNRRQllPVRHRI------ 364
Cdd:COG1129 270 --------DVSFSVRAGEILGIAGLVGAGRT----ELARALfgadpADSGEIRLDGKPVRIRSPRD--AIRAGIayvped 335
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 365 ---QVVFQD----PNSSLnPRLNVLqiieeglrVHQPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVA 437
Cdd:COG1129 336 rkgEGLVLDlsirENITL-ASLDRL--------SRGGLLDRRRERALAEEYIKRLRIKTPSPEQPVGNLSGGNQQKVVLA 406
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 438 RALILKPSLIILDEPTSSLD---KtvqAQILALLKSLQQKhRLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:COG1129 407 KWLATDPKVLILDEPTRGIDvgaK---AEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMREGRIV 473
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
305-504 |
8.24e-48 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 165.36 E-value: 8.24e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLLPVRHR-IQVVFQDPNssLNPR 378
Cdd:cd03255 23 VSLSIEKGEFVAIVGPSGSGKST----LLNILGgldrpTSGEVRVDGTDISKLSEKELAAFRRRhIGFVFQSFN--LLPD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:cd03255 97 LTALENVELPLLLAG--VPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRaLCHQVIVLRQGEV 504
Cdd:cd03255 174 ETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
305-503 |
4.81e-46 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 160.33 E-value: 4.81e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPNSSL-NPR 378
Cdd:cd03225 20 ISLTIKKGEFVLIVGPNGSGKST----LLRLLngllgPTSGEVLVDGKDLTKLSLKEL---RRKVGLVFQNPDDQFfGPT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 lnvlqIIEE---GLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:cd03225 93 -----VEEEvafGLENLG--LPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 804913277 456 LDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGE 503
Cdd:cd03225 165 LDPAGRRELLELLKKLKAEGK-TIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
305-527 |
6.42e-46 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 160.93 E-value: 6.42e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLdTLNRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:COG1126 20 ISLDVEKGEVVVIIGPSGSGKST----LLRCINlleepDSGTITVDGEDL-TDSKKDINKLRRKVGMVFQQFN--LFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLdPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:COG1126 93 TVLENVTLAPIKVK-KMSKAEAEERAMELLERVGL-ADKADAYPAQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 460 VQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:COG1126 171 LVGEVLDVMRDLAKEG-MTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHERTRAFLS 237
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-254 |
1.01e-45 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 160.53 E-value: 1.01e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLL 79
Cdd:COG1127 1 MSEPMIEVRNLTKSFGD----RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLrPD------SGEILVDGQDIT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 80 HASEQTLRGVRgNKIAMIFQEPMV--SLNPLHTLEKQLYEVLSLHRGMRREAARAemigCLDRVGIRQASQRlrdYPHQL 157
Cdd:COG1127 71 GLSEKELYELR-RRIGMLFQGGALfdSLTVFENVAFPLREHTDLSEAEIRELVLE----KLELVGLPGAADK---MPSEL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALD-VSVqAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:COG1127 143 SGGMRKRVALARALALDPEILLYDEPTAGLDpITS-AVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKII 221
|
250
....*....|....*...
gi 804913277 237 ENQRADTLLSAPtHPYTQ 254
Cdd:COG1127 222 AEGTPEELLASD-DPWVR 238
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
305-518 |
2.02e-45 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 162.96 E-value: 2.02e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLnrrqllPVRHR-IQVVFQDPnsSLNPR 378
Cdd:COG3842 24 VSLSIEPGEFVALLGPSGCGKTT----LLRMIagfetPDSGRILLDGRDVTGL------PPEKRnVGMVFQDY--ALFPH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:COG3842 92 LTVAENVAFGLRMRG--VPKAEIRARVAELLELVGLE-GLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:COG3842 169 KLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIYERPA 228
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
8-248 |
2.54e-45 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 158.90 E-value: 2.54e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTLR 87
Cdd:cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS-TLIRCINGLERPT----SGSVLVDGTDLTLLSGKELR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRgNKIAMIFQ------EPMVSLNPLHTLEkqlyevlslHRGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGE 161
Cdd:cd03258 79 KAR-RRIGMIFQhfnllsSRTVFENVALPLE---------IAGVPKAEIEERVLELLELVGL---EDKADAYPAQLSGGQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRA 241
Cdd:cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225
|
....*..
gi 804913277 242 DTLLSAP 248
Cdd:cd03258 226 EEVFANP 232
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
274-513 |
3.11e-45 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 159.45 E-value: 3.11e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 274 PLLEVDKLRVAFPIRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQS 348
Cdd:COG3638 1 PMLELRNLSKRYPGGTPALDD----------VSLEIERGEFVALIGPSGAGKST----LLRCLNglvepTSGEILVDGQD 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 349 LDTLNRRQLLPVRHRIQVVFQDPNssLNPRLNVLQIIEEGLRVHQPTLSG-----AQRE-QQVKAVMMEVGLDPETRHRy 422
Cdd:COG3638 67 VTALRGRALRRLRRRIGMIFQQFN--LVPRLSVLTNVLAGRLGRTSTWRSllglfPPEDrERALEALERVGLADKAYQR- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 423 PAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQG 502
Cdd:COG3638 144 ADQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDG 223
|
250
....*....|.
gi 804913277 503 EVVEQGQCERV 513
Cdd:COG3638 224 RVVFDGPPAEL 234
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
305-509 |
5.65e-45 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 157.91 E-value: 5.65e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:COG2884 21 VSLEIEKGEFVFLTGPSGAGKST----LLKLLYgeerpTSGQVLVNGQDLSRLKRREIPYLRRRIGVVFQDFR--LLPDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHqpTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:COG2884 95 TVYENVALPLRVT--GKSRKEIRRRVREVLDLVGLS-DKAKALPHELSGGEQQRVAIARALVNRPELLLADEPTGNLDPE 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 460 VQAQILALLKSLqqkHRL--AYIFISHDLHVVRALCHQVIVLRQGEVVEQGQ 509
Cdd:COG2884 172 TSWEIMELLEEI---NRRgtTVLIATHDLELVDRMPKRVLELEDGRLVRDEA 220
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
275-516 |
1.19e-44 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 157.90 E-value: 1.19e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFPiRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSL 349
Cdd:COG1120 1 MLEAENLSVGYG-GRPVLDD----------VSLSLPPGEVTALLGPNGSGKST----LLRALagllkPSSGEVLLDGRDL 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 350 DTLNRRQLlpvRHRIQVVFQDPNSSLNprLNVLQIIEEGLRVHQPTLSGAQRE--QQVKAVMMEVGLDpETRHRYPAEFS 427
Cdd:COG1120 66 ASLSRREL---ARRIAYVPQEPPAPFG--LTVRELVALGRYPHLGLFGRPSAEdrEAVEEALERTGLE-HLADRPVDELS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 428 GGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQ 507
Cdd:COG1120 140 GGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQ 219
|
....*....
gi 804913277 508 GQCERVFTA 516
Cdd:COG1120 220 GPPEEVLTP 228
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
305-526 |
1.56e-44 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 160.35 E-value: 1.56e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPN--SSLNP 377
Cdd:PRK11153 24 VSLHIPAGEIFGVIGASGAGKST----LIRCINllerpTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNllSSRTV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 RLNV---LQIieEGLrvhqptlSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:PRK11153 100 FDNValpLEL--AGT-------PKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 455 SLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK11153 170 ALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREFI 241
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
305-508 |
1.56e-44 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 156.14 E-value: 1.56e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNrrqllPVRHRIQVVFQDPnsSLNPRL 379
Cdd:cd03259 19 LSLTVEPGEFLALLGPSGCGKTT----LLRLIAglerpDSGEILIDGRDVTGVP-----PERRNIGMVFQDY--ALFPHL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHqpTLSGAQREQQVKAVMMEVGLDPEtRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03259 88 TVAENIAFGLKLR--GVPKAEIRARVRELLELVGLEGL-LNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03259 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
273-529 |
1.81e-43 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 155.08 E-value: 1.81e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRVAFPIRKGIlkrvvdhnvvvNNISFTLHPGETLGLVGESGSGKSTTgLALL--RLIRSEGRIVF---DGQ 347
Cdd:PRK11701 4 QPLLSVRGLTKLYGPRKGC-----------RDVSFDLYPGEVLGIVGESGSGKTTL-LNALsaRLAPDAGEVHYrmrDGQ 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 348 SLDTL-----NRRQLLpvRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVhqptlSGAQREQQVKAV----MMEVGLDPET 418
Cdd:PRK11701 72 LRDLYalseaERRRLL--RTEWGFVHQHPRDGLRMQVSAGGNIGERLMA-----VGARHYGDIRATagdwLERVEIDAAR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 419 RHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIV 498
Cdd:PRK11701 145 IDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV 224
|
250 260 270
....*....|....*....|....*....|.
gi 804913277 499 LRQGEVVEQGQCERVFTAPQQAYTrQLLALS 529
Cdd:PRK11701 225 MKQGRVVESGLTDQVLDDPQHPYT-QLLVSS 254
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-258 |
1.87e-43 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 154.38 E-value: 1.87e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLlHASEQ 84
Cdd:COG1126 1 MIEIENLHKSFGDLE----VLKGISLDVEKGEVVVIIGPSGSGKS-TLLRCINLLEEPD----SGTITVDGEDL-TDSKK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRGnKIAMIFQepmvSLN--PLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGER 162
Cdd:COG1126 71 DINKLRR-KVGMVFQ----QFNlfPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGL---ADKADAYPAQLSGGQQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRAD 242
Cdd:COG1126 143 QRVAIARALAMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPE 221
|
250
....*....|....*.
gi 804913277 243 TLLSAPTHPYTQKLLN 258
Cdd:COG1126 222 EFFENPQHERTRAFLS 237
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-247 |
3.42e-43 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 153.30 E-value: 3.42e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGESLLHASE 83
Cdd:COG1131 1 IEVRGLTKRYGDKT----ALDGVSLTVEPGEIFGLLGPNGAGKT-TTIRMLlgLLRPT------SGEVRVLGEDVARDPA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRgvrgnKIAMIFQEPmvSLNPLHTLEKQLYEVLSLHrGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQ 163
Cdd:COG1131 70 EVRR-----RIGYVPQEP--ALYPDLTVRENLRFFARLY-GLPRKEARERIDELLELFGL---TDAADRKVGTLSGGMKQ 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADT 243
Cdd:COG1131 139 RLGLALALLHDPELLILDEPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDE 217
|
....
gi 804913277 244 LLSA 247
Cdd:COG1131 218 LKAR 221
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
305-508 |
6.75e-43 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 152.53 E-value: 6.75e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRqllpVRHRIQVVFQDPNssLNPRLNVLQ 383
Cdd:COG1131 19 VSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRpTSGEVRVLGEDVARDPAE----VRRRIGYVPQEPA--LYPDLTVRE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:COG1131 93 NLRFFARLYG--LPRKEARERIDELLELFGLT-DAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDPEARRE 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 804913277 464 ILALLKSLQQKHRLayIFIS-HDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:COG1131 170 LWELLRELAAEGKT--VLLStHYLEEAERLCDRVAIIDKGRIVADG 213
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-259 |
8.00e-43 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 153.16 E-value: 8.00e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQHVRPVvnaiSLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGES- 77
Cdd:PRK11701 2 MDQPLLSVRGLTKLYGPRKGCRDV----SFDLYPGEVLGIVGESGSGKT-TLLNALsaRLAPD------AGEVHYRMRDg 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 78 ----LLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHT----LEKQLYEVLSLHRGMRREAAraemIGCLDRVGIrqASQR 149
Cdd:PRK11701 71 qlrdLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSaggnIGERLMAVGARHYGDIRATA----GDWLERVEI--DAAR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 150 LRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAV 229
Cdd:PRK11701 145 IDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV 224
|
250 260 270
....*....|....*....|....*....|
gi 804913277 230 MQHGKCVENQRADTLLSAPTHPYTQKLLNS 259
Cdd:PRK11701 225 MKQGRVVESGLTDQVLDDPQHPYTQLLVSS 254
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-513 |
1.28e-42 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 159.20 E-value: 1.28e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSVTaLSILRLLPTPPAVylSGDIRFH----------- 74
Cdd:TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVL-MHVLRGMDQYEPT--SGRIIYHvalcekcgyve 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 75 ------------GESL-------LHASEQTLRGVRgNKIAMIFQ-------EPMVSLNPLHTLEKQLYEVlslHRGMRRE 128
Cdd:TIGR03269 74 rpskvgepcpvcGGTLepeevdfWNLSDKLRRRIR-KRIAIMLQrtfalygDDTVLDNVLEALEEIGYEG---KEAVGRA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 129 AARAEMIgcldrvgirQASQRLRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNM 208
Cdd:TIGR03269 150 VDLIEMV---------QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 209 GLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSA--PTHPYTQKLLNSEpTGDPVplpagqAPLLEVDKLRVAfp 286
Cdd:TIGR03269 221 SMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVfmEGVSEVEKECEVE-VGEPI------IKVRNVSKRYIS-- 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 287 IRKGILKrvvdhnvVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVF--DGQSLDTLNRRQLLPVRHR 363
Cdd:TIGR03269 292 VDRGVVK-------AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEpTSGEVNVrvGDEWVDMTKPGPDGRGRAK 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 364 --IQVVFQDpnSSLNPRLNVLQIIEEGLRVHQPTLSGaqreqQVKAV--MMEVGLDPETR----HRYPAEFSGGQRQRIA 435
Cdd:TIGR03269 365 ryIGILHQE--YDLYPHRTVLDNLTEAIGLELPDELA-----RMKAVitLKMVGFDEEKAeeilDKYPDELSEGERHRVA 437
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 436 VARALILKPSLIILDEPTSSLD----KTVQAQILALLKSLQQkhrlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCE 511
Cdd:TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDpitkVDVTHSILKAREEMEQ----TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
|
..
gi 804913277 512 RV 513
Cdd:TIGR03269 514 EI 515
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
305-526 |
3.76e-42 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 154.15 E-value: 3.76e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTlNrrqlLPVRHR-IQVVFQDPnsSLNPR 378
Cdd:COG1118 21 VSLEIASGELVALLGPSGSGKTT----LLRIIAgletpDSGRIVLNGRDLFT-N----LPPRERrVGFVFQHY--ALFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQPtlSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:COG1118 90 MTVAENIAFGLRVRPP--SKAEIRARVEELLELVQLE-GLADRYPSQLSGGQRQRVALARALAVEPEVLLLDEPFGALDA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:COG1118 167 KVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPATPFVARFL 234
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
305-507 |
3.87e-42 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 149.93 E-value: 3.87e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDtlnrrqllPVRHRIQVVFQDPnsSLNPRL 379
Cdd:cd03293 23 ISLSVEEGEFVALVGPSGCGKST----LLRIIAglerpTSGEVLVDGEPVT--------GPGPDRGYVFQQD--ALLPWL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03293 89 TVLDNVALGLELQG--VPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVL--RQGEVVEQ 507
Cdd:cd03293 166 TREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLsaRPGRIVAE 215
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-242 |
5.63e-42 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 149.89 E-value: 5.63e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLH 80
Cdd:COG4181 4 SSAPIIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKS-TLLGLLAGLDRPT----SGTVRLAGQDLFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRGVRGNKIAMIFQEPMVsLNPLHTLEkqlYEVLSLH-RGMR--REAARAEmigcLDRVGIrqaSQRLRDYPHQL 157
Cdd:COG4181 79 LDEDARARLRARHVGFVFQSFQL-LPTLTALE---NVMLPLElAGRRdaRARARAL----LERVGL---GHRLDHYPAQL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKlADSVAVMQHGKCVE 237
Cdd:COG4181 148 SGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVE 226
|
....*
gi 804913277 238 NQRAD 242
Cdd:COG4181 227 DTAAT 231
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
270-506 |
6.09e-42 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 151.01 E-value: 6.09e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 270 AGQAPLLEVDKLRVAFPIRKG---ILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGR 341
Cdd:COG1116 2 SAAAPALELRGVSKRFPTGGGgvtALDD----------VSLTVAAGEFVALVGPSGCGKST----LLRLIaglekPTSGE 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 342 IVFDGQSLDtlnrrqllPVRHRIQVVFQDPnsSLNPRLNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHR 421
Cdd:COG1116 68 VLVDGKPVT--------GPGPDRGVVFQEP--ALLPWLTVLDNVALGLELRG--VPKAERRERARELLELVGLA-GFEDA 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 422 YPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDktVQ--AQILALLKSLQQKHRLAYIFISHDLH--VvrALCHQVI 497
Cdd:COG1116 135 YPHQLSGGMRQRVAIARALANDPEVLLMDEPFGALD--ALtrERLQDELLRLWQETGKTVLFVTHDVDeaV--FLADRVV 210
|
250
....*....|.
gi 804913277 498 VL--RQGEVVE 506
Cdd:COG1116 211 VLsaRPGRIVE 221
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
275-508 |
8.09e-42 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 150.14 E-value: 8.09e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFPIRKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLN 353
Cdd:TIGR02315 1 MLEVENLSKVYPNGKQALK----------NINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEpSSGSILLEGTDITKLR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 354 RRQLLPVRHRIQVVFQDPNssLNPRLNVLQIIEEGLRVHQPTLSGA----QREQQVKAV--MMEVGLDpETRHRYPAEFS 427
Cdd:TIGR02315 71 GKKLRKLRRRIGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLlgrfSEEDKERALsaLERVGLA-DKAYQRADQLS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 428 GGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQ 507
Cdd:TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227
|
.
gi 804913277 508 G 508
Cdd:TIGR02315 228 G 228
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-236 |
9.69e-42 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 149.82 E-value: 9.69e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSvTAL-SILRLL-PTppavylSGDIRFHGESLLHA 81
Cdd:COG3638 1 PMLELRNLSKRYPGG---TPALDDVSLEIERGEFVALIGPSGAGKS-TLLrCLNGLVePT------SGEILVDGQDVTAL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRGVRGnKIAMIFQEpmvslnplHTLEKQLYeVL-----------SLHRGMRR---EAARAEMIGCLDRVGIR-QA 146
Cdd:COG3638 71 RGRALRRLRR-RIGMIFQQ--------FNLVPRLS-VLtnvlagrlgrtSTWRSLLGlfpPEDRERALEALERVGLAdKA 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 147 SQRlrdyPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADS 226
Cdd:COG3638 141 YQR----ADQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADR 216
|
250
....*....|
gi 804913277 227 VAVMQHGKCV 236
Cdd:COG3638 217 IIGLRDGRVV 226
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-236 |
1.23e-41 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 149.02 E-value: 1.23e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSILR--LLPTppavylSGDIRFHGESLlhaSE 83
Cdd:COG1122 1 IELENLSFSYPGG---TPALDDVSLSIEKGEFVAIIGPNGSGKS-TLLRLLNglLKPT------SGEVLVDGKDI---TK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVRgNKIAMIFQEPmvslnplhtlEKQLYE--VLS------LHRGMRREAARAEMIGCLDRVGIrqasQRLRD-YP 154
Cdd:COG1122 68 KNLRELR-RKVGLVFQNP----------DDQLFAptVEEdvafgpENLGLPREEIRERVEEALELVGL----EHLADrPP 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:COG1122 133 HELSGGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGR 211
|
..
gi 804913277 235 CV 236
Cdd:COG1122 212 IV 213
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
28-505 |
1.43e-41 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 155.96 E-value: 1.43e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGEsllhasEQTLRG---VRGNKIAMIFQEPM 102
Cdd:COG3845 24 VSLTVRPGEIHALLGENGAGKS-TLMKILygLYQPD------SGEILIDGK------PVRIRSprdAIALGIGMVHQHFM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 103 vsLNPLHTLekqlYE--VLSLHRG----MRREAARAEmigcldrvgIRQASQR------LRDYPHQLSGGERQRVMIAMA 170
Cdd:COG3845 91 --LVPNLTV----AEniVLGLEPTkggrLDRKAARAR---------IRELSERygldvdPDAKVEDLSVGEQQRVEILKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 171 LLTRPELLIADEPTTALdvSVQ--AQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVEnqradtllSAP 248
Cdd:COG3845 156 LYRGARILILDEPTAVL--TPQeaDELFEILRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRGKVVG--------TVD 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 249 THPYTQKLLNSEPTGDPVPLP------AGQAPLLEVDKLRVAFPIRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESG 322
Cdd:COG3845 225 TAETSEEELAELMVGREVLLRvekapaEPGEVVLEVENLSVRDDRGVPALKD----------VSLEVRAGEILGIAGVAG 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 323 SGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLLpvRHRIQVVFQDPNSS-LNPRLNV-----LQIIEEGLRVHQPT 395
Cdd:COG3845 295 NGQSELAEALAGLRPpASGSIRLDGEDITGLSPRERR--RLGVAYIPEDRLGRgLVPDMSVaenliLGRYRRPPFSRGGF 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 396 LSGAQREQQVKAVMME---VGLDPETRHRypaEFSGGQRQRIAVARALILKPSLIILDEPTSSLD----KTVQAQILALl 468
Cdd:COG3845 373 LDRKAIRAFAEELIEEfdvRTPGPDTPAR---SLSGGNQQKVILARELSRDPKLLIAAQPTRGLDvgaiEFIHQRLLEL- 448
|
490 500 510
....*....|....*....|....*....|....*..
gi 804913277 469 kslqQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:COG3845 449 ----RDAGAAVLLISEDLDEILALSDRIAVMYEGRIV 481
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
254-508 |
1.62e-41 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 156.84 E-value: 1.62e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 254 QKLLNSEPTGDP---VPLPAGQAPLLEVDKLRVAFPIRKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTTGL 330
Cdd:COG4988 312 FALLDAPEPAAPagtAPLPAAGPPSIELEDVSFSYPGGRPALD----------GLSLTIPPGERVALVGPSGAGKSTLLN 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 331 ALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSlnprlnvlqiIEEGLRVHQPTLSgaqrEQQVK 406
Cdd:COG4988 382 LLLGFLPpYSGSILINGVDLSDLDPASW---RRQIAWVPQNPylfAGT----------IRENLRLGRPDAS----DEELE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 407 AVMMEVGLDPETRhRYP-----------AEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH 475
Cdd:COG4988 445 AALEAAGLDEFVA-ALPdgldtplgeggRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR 523
|
250 260 270
....*....|....*....|....*....|...
gi 804913277 476 RLayIFISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:COG4988 524 TV--ILITHRLALLAQ-ADRILVLDDGRIVEQG 553
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
305-508 |
1.72e-41 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 158.46 E-value: 1.72e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSln 376
Cdd:COG2274 494 ISLTIKPGERVAIVGRSGSGKST----LLKLLlglyePTSGRILIDGIDLRQIDPASL---RRQIGVVLQDVflfSGT-- 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 prlnvlqiIEEGLRVHQPTLSgaqrEQQVKAVMMEVGLDPETRHRyP-----------AEFSGGQRQRIAVARALILKPS 445
Cdd:COG2274 565 --------IRENITLGDPDAT----DEEIIEAARLAGLHDFIEAL-PmgydtvvgeggSNLSGGQRQRLAIARALLRNPR 631
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 446 LIILDEPTSSLDKTVQAQILALLKSLQQKHRLayIFISHDLHVVRaLCHQVIVLRQGEVVEQG 508
Cdd:COG2274 632 ILILDEATSALDAETEAIILENLRRLLKGRTV--IIIAHRLSTIR-LADRIIVLDKGRIVEDG 691
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
3-274 |
2.13e-41 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 149.84 E-value: 2.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLS-----VGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTAlsilRLL-----PTppavylSGDIR 72
Cdd:PRK10419 1 MTLLNVSGLShhyahGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLA----RLLvglesPS------QGNVS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 73 FHGESLLHASEQTLRGVRGNkIAMIFQEPMVSLNPLHTLEKQLYE----VLSLHRGmRREAARAEMigcLDRVGIRQA-S 147
Cdd:PRK10419 71 WRGEPLAKLNRAQRKAFRRD-IQMVFQDSISAVNPRKTVREIIREplrhLLSLDKA-ERLARASEM---LRAVDLDDSvL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 148 QRLrdyPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSV 227
Cdd:PRK10419 146 DKR---PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRV 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 804913277 228 AVMQHGKCVEnQRADTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAP 274
Cdd:PRK10419 223 MVMDNGQIVE-TQPVGDKLTFSSPAGRVLQNAVLPAFPVRRRTTEKV 268
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
305-503 |
2.26e-41 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 146.56 E-value: 2.26e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLnRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:cd03229 19 VSLNIEAGEIVALLGPSGSGKST----LLRCIagleePDSGSILIDGEDLTDL-EDELPPLRRRIGMVFQDFA--LFPHL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLrvhqptlsgaqreqqvkavmmevgldpetrhrypaefSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03229 92 TVLENIALGL-------------------------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPI 134
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGE 503
Cdd:cd03229 135 TRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-236 |
3.01e-41 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 148.65 E-value: 3.01e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTAL-SILRLLPtppavYLSGDIRFHGESLLHASe 83
Cdd:COG1120 1 MLEAENLSVGYGG----RPVLDDVSLSLPPGEVTALLGPNGSGKS-TLLrALAGLLK-----PSSGEVLLDGRDLASLS- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 qtlRGVRGNKIAMIFQEPMVSLnPLHtlekqLYEVLSL----HRGM--------RREAARAemigcLDRVGIrqASQRLR 151
Cdd:COG1120 70 ---RRELARRIAYVPQEPPAPF-GLT-----VRELVALgrypHLGLfgrpsaedREAVEEA-----LERTGL--EHLADR 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 152 DYpHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQ 231
Cdd:COG1120 134 PV-DELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLK 212
|
....*
gi 804913277 232 HGKCV 236
Cdd:COG1120 213 DGRIV 217
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
305-518 |
5.89e-41 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 148.75 E-value: 5.89e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST-----TGLallrLIRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSslnprl 379
Cdd:TIGR04521 24 VSLTIEDGEFVAIIGHTGSGKSTliqhlNGL----LKPTSGTVTIDGRDITAKKKKKLKDLRKKVGLVFQFPEH------ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 nvlQIIEE--------GLRvhQPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDE 451
Cdd:TIGR04521 94 ---QLFEEtvykdiafGPK--NLGLSEEEAEERVKEALELVGLDEEYLERSPFELSGGQMRRVAIAGVLAMEPEVLILDE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 452 PTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:TIGR04521 169 PTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVD 235
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
305-503 |
7.59e-41 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 144.83 E-value: 7.59e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSLnpRLN 380
Cdd:cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDpTSGEILIDGVDLRDLDLESL---RKNIAYVPQDPflfSGTI--REN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VLqiieeglrvhqptlsgaqreqqvkavmmevgldpetrhrypaefSGGQRQRIAVARALILKPSLIILDEPTSSLDKTV 460
Cdd:cd03228 96 IL--------------------------------------------SGGQRQRIAIARALLRDPPILILDEATSALDPET 131
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 804913277 461 QAQILALLKSLQQKHRLayIFISHDLHVVRaLCHQVIVLRQGE 503
Cdd:cd03228 132 EALILEALRALAKGKTV--IVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
305-526 |
8.45e-41 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 150.06 E-value: 8.45e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-----SEGRIVFDGQSLDTLN---RRQLlpVRHRIQVVFQDPNSSLN 376
Cdd:COG4170 26 VSLTLNEGEIRGLVGESGSGKSLIAKAICGITKdnwhvTADRFRWNGIDLLKLSpreRRKI--IGREIAMIFQEPSSCLD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLQIIEEGLrvHQPTLSG------AQREQQVKAVMMEVGL-DPETRHR-YPAEFSGGQRQRIAVARALILKPSLII 448
Cdd:COG4170 104 PSAKIGDQLIEAI--PSWTFKGkwwqrfKWRKKRAIELLHRVGIkDHKDIMNsYPHELTEGECQKVMIAMAIANQPRLLI 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 449 LDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:COG4170 182 ADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESGPTEQILKSPHHPYTKALL 259
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
8-252 |
9.82e-41 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 146.88 E-value: 9.82e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLpTPpavyLSGDIRFHGESLLHASEQTLR 87
Cdd:cd03261 3 LRGLTKSFGG----RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-RP----DSGEVLIDGEDISGLSEAELY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRgNKIAMIFQEPMV--SLNPLHTLEKQLYEVLSLHRGMRREAARAemigCLDRVGIRQASQRlrdYPHQLSGGERQRV 165
Cdd:cd03261 74 RLR-RRMGMLFQSGALfdSLTVFENVAFPLREHTRLSEEEIREIVLE----KLEAVGLRGAEDL---YPAELSGGMKKRV 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 166 MIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLL 245
Cdd:cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
....*..
gi 804913277 246 sAPTHPY 252
Cdd:cd03261 226 -ASDDPL 231
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
305-524 |
1.12e-40 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 147.79 E-value: 1.12e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLLPVR-HRIQVVFQdpNSSLNPR 378
Cdd:cd03294 43 VSLDVREGEIFVIMGLSGSGKST----LLRCINrliepTSGKVLIDGQDIAAMSRKELRELRrKKISMVFQ--SFALLPH 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDPEtRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:cd03294 117 RTVLENVAFGLEVQG--VPRAEREERAAEALELVGLEGW-EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQ 524
Cdd:cd03294 194 LIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVRE 259
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-244 |
1.14e-40 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 146.77 E-value: 1.14e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTAL-SILRLLPTppavyLSGDIRFHGESLl 79
Cdd:COG1121 2 MMMPAIELENLTVSYGG----RPVLEDVSLTIPPGEFVAIVGPNGAGKS-TLLkAILGLLPP-----TSGTVRLFGKPP- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 80 haseqtlrGVRGNKIAMIFQEPMVSLN-PLHtlekqLYEVLSL----HRGM-------RREAARAemigCLDRVGIRQ-A 146
Cdd:COG1121 71 --------RRARRRIGYVPQRAEVDWDfPIT-----VRDVVLMgrygRRGLfrrpsraDREAVDE----ALERVGLEDlA 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 147 SQRLRdyphQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADS 226
Cdd:COG1121 134 DRPIG----ELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDR 208
|
250
....*....|....*...
gi 804913277 227 VAVMQHGKCVENQRADTL 244
Cdd:COG1121 209 VLLLNRGLVAHGPPEEVL 226
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-230 |
1.63e-40 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 147.16 E-value: 1.63e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHG 75
Cdd:COG1116 3 AAAPALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKS----TLLRLIaglekPT------SGEVLVDG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 ESLLHAseqtlrgvrGNKIAMIFQEPmvSLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQASQRlrdYPH 155
Cdd:COG1116 73 KPVTGP---------GPDRGVVFQEP--ALLPWLTVLDNVALGLEL-RGVPKAERRERARELLELVGLAGFEDA---YPH 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLS--IVkkLADSVAVM 230
Cdd:COG1116 138 QLSGGMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDeaVF--LADRVVVL 212
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-252 |
2.42e-40 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 149.09 E-value: 2.42e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQqhvrPVVNAISLQVNAGETLALVGESGSGKSVTalsiLRLL-----PTppavylSGDIRFHG 75
Cdd:COG3842 1 MAMPALELENVSKRYGDV----TALDDVSLSIEPGEFVALLGPSGCGKTTL----LRMIagfetPD------SGRILLDG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 ESLLH-ASEQtlrgvRGnkIAMIFQEPmvSLNPLHT--------LEkqlyevlslHRGMRREAARAEMIGCLDRVGIRQA 146
Cdd:COG3842 67 RDVTGlPPEK-----RN--VGMVFQDY--ALFPHLTvaenvafgLR---------MRGVPKAEIRARVAELLELVGLEGL 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 147 SQRlrdYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHN----LSivkk 222
Cdd:COG3842 129 ADR---YPHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDqeeaLA---- 201
|
250 260 270
....*....|....*....|....*....|
gi 804913277 223 LADSVAVMQHGKCVENQRADTLLSAPTHPY 252
Cdd:COG3842 202 LADRIAVMNDGRIEQVGTPEEIYERPATRF 231
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
8-259 |
3.48e-40 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 148.41 E-value: 3.48e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTLR 87
Cdd:PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS-TLIRCINLLERPT----SGRVLVDGQDLTALSEKELR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRgNKIAMIFQEpmvsLNPLHTleKQLYEVLSLH---RGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQR 164
Cdd:PRK11153 79 KAR-RQIGMIFQH----FNLLSS--RTVFDNVALPlelAGTPKAEIKARVTELLELVGL---SDKADRYPAQLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTL 244
Cdd:PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
|
250
....*....|....*
gi 804913277 245 LSAPTHPYTQKLLNS 259
Cdd:PRK11153 229 FSHPKHPLTREFIQS 243
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
305-527 |
3.99e-40 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 146.00 E-value: 3.99e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLI-----RSEGRIVFDGQSLDTlnrrQLLPVRHrIQVVFQDPNSSLNPRL 379
Cdd:PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILpagvrQTAGRVLLDGKPVAP----CALRGRK-IATIMQNPRSAFNPLH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVhqptLSGAQREQQVKAVMMEVGLDPETR--HRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK10418 97 TMHTHARETCLA----LGKPADDATLTAALEAVGLENAARvlKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:PRK10418 173 VVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVS 242
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
276-513 |
4.80e-40 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 145.02 E-value: 4.80e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 276 LEVDKLRVAFPIRKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLD 350
Cdd:cd03256 1 IEVENLSKTYPNGKKALK----------DVSLSINPGEFVALIGPSGAGKST----LLRCLNglvepTSGSVLIDGTDIN 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 351 TLNRRQLLPVRHRIQVVFQDPNssLNPRLNVLQIIEEGLRVHQPTLSG------AQREQQVKAVMMEVGLDPETRHRyPA 424
Cdd:cd03256 67 KLKGKALRQLRRQIGMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSlfglfpKEEKQRALAALERVGLLDKAYQR-AD 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 425 EFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
....*....
gi 804913277 505 VEQGQCERV 513
Cdd:cd03256 224 VFDGPPAEL 232
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
8-234 |
7.40e-40 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 143.76 E-value: 7.40e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSvgFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPpavyLSGDIRFHGESLlhaSEQTLR 87
Cdd:cd03225 2 LKNLS--FSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKS-TLLRLLNGLLGP----TSGEVLVDGKDL---TKLSLK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRGnKIAMIFQEPmvslnplhtlEKQLY------EVLS--LHRGMRREAARAEMIGCLDRVGIrqasQRLRDY-PHQLS 158
Cdd:cd03225 72 ELRR-KVGLVFQNP----------DDQFFgptveeEVAFglENLGLPEEEIEERVEEALELVGL----EGLRDRsPFTLS 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03225 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
273-529 |
4.05e-39 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 143.05 E-value: 4.05e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRVAFPIRKGIlkrvvdhnvvvNNISFTLHPGETLGLVGESGSGKSTTGLALL-RLIRSEGRIVF---DGQS 348
Cdd:TIGR02323 1 KPLLQVSGLSKSYGGGKGC-----------RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAgRLAPDHGTATYimrSGAE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 349 LDTL-----NRRQLLpvRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSGAQREQQVKAvMMEVGLDPETRHRYP 423
Cdd:TIGR02323 70 LELYqlseaERRRLM--RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDW-LEEVEIDPTRIDDLP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 424 AEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGE 503
Cdd:TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGR 226
|
250 260
....*....|....*....|....*.
gi 804913277 504 VVEQGQCERVFTAPQQAYTrQLLALS 529
Cdd:TIGR02323 227 VVESGLTDQVLDDPQHPYT-QLLVSS 251
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
305-504 |
5.08e-39 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 141.49 E-value: 5.08e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPnsslnpRL 379
Cdd:COG4619 19 VSLTLEAGECVAITGPSGSGKST----LLRALadldpPTSGEIYLDGKPLSAMPPPEW---RRQVAYVPQEP------AL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 ---NVLQIIEEGLRVHQPTLSgaqrEQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:COG4619 86 wggTVRDNLPFPFQLRERKFD----RERALELLERLGLPPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPTSAL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 804913277 457 DKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:COG4619 162 DPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
273-521 |
5.90e-39 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 142.15 E-value: 5.90e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRVAFPiRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQ 347
Cdd:COG1121 4 MPAIELENLTVSYG-GRPVLED----------VSLTIPPGEFVAIVGPNGAGKST----LLKAIlgllpPTSGTVRLFGK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 348 SLDTlnrrqllpVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSGAQRE--QQVKAVMMEVGLDpETRHRYPAE 425
Cdd:COG1121 69 PPRR--------ARRRIGYVPQRAEVDWDFPITVRDVVLMGRYGRRGLFRRPSRAdrEAVDEALERVGLE-DLADRPIGE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 426 FSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQkHRLAYIFISHDLHVVRALCHQVIVLRQGeVV 505
Cdd:COG1121 140 LSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRR-EGKTILVVTHDLGAVREYFDRVLLLNRG-LV 217
|
250
....*....|....*...
gi 804913277 506 EQGQCERVFTAP--QQAY 521
Cdd:COG1121 218 AHGPPEEVLTPEnlSRAY 235
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
305-518 |
7.29e-39 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 141.70 E-value: 7.29e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRS-----EGRIVFDGQSLDTLNrrqllPVRHRIQVVFQdpNSSLNPRL 379
Cdd:cd03299 18 VSLEVERGDYFVILGPTGSGKSV----LLETIAGfikpdSGKILLNGKDITNLP-----PEKRDISYVPQ--NYALFPHM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHqpTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03299 87 TVYKNIAYGLKKR--KVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPK 222
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
5-259 |
8.68e-39 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 142.62 E-value: 8.68e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFR------QQQHVRpVVNAISLQVNAGETLALVGESGSGKSVTAlsilRLLP--TPPAvylSGDIRFHGE 76
Cdd:PRK15112 4 LLEVRNLSKTFRyrtgwfRRQTVE-AVKPLSFTLREGQTLAIIGENGSGKSTLA----KMLAgmIEPT---SGELLIDDH 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 77 SLLHASeqtlRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRqaSQRLRDYPHQ 156
Cdd:PRK15112 76 PLHFGD----YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL--PDHASYYPHM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
250 260
....*....|....*....|...
gi 804913277 237 ENQRADTLLSAPTHPYTQKLLNS 259
Cdd:PRK15112 230 ERGSTADVLASPLHELTKRLIAG 252
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
5-237 |
1.18e-38 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 140.95 E-value: 1.18e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQ 84
Cdd:TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKS-TLLHLLGGLDNPT----SGEVLFNGQSLSKLSSN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRGNKIAMIFQEPMVsLNPLHTLEKQLYEVLSLHRGMRREAARAEMIgcLDRVGIrqaSQRLRDYPHQLSGGERQR 164
Cdd:TIGR02211 76 ERAKLRNKKLGFIYQFHHL-LPDFTALENVAMPLLIGKKSVKEAKERAYEM--LEKVGL---EHRINHRPSELSGGERQR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLaDSVAVMQHGKCVE 237
Cdd:TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLFN 221
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-504 |
1.24e-38 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 147.77 E-value: 1.24e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFrqqqhvrPVVNA---ISLQVNAGETLALVGESGSGKSvTALSILrllptpPAVY----LSGDIRF 73
Cdd:PRK13549 1 MMEYLLEMKNITKTF-------GGVKAldnVSLKVRAGEIVSLCGENGAGKS-TLMKVL------SGVYphgtYEGEIIF 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 74 HGEsLLHAseQTLRGVRGNKIAMIFQEPMvsLNPLHTLEKQLYEVLSLHRG-------MRREAARaemigCLDRVGIR-Q 145
Cdd:PRK13549 67 EGE-ELQA--SNIRDTERAGIAIIHQELA--LVKELSVLENIFLGNEITPGgimdydaMYLRAQK-----LLAQLKLDiN 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 146 ASQRLRDYphqlSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLAD 225
Cdd:PRK13549 137 PATPVGNL----GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISD 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 226 SVAVMQHGKCVENQRADTL-------------LSA--PTHPYTqkllnsepTGDPVplpagqaplLEVDKLRVAFPIRKG 290
Cdd:PRK13549 212 TICVIRDGRHIGTRPAAGMteddiitmmvgreLTAlyPREPHT--------IGEVI---------LEVRNLTAWDPVNPH 274
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 291 IlKRvvdhnvvVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLI--RSEGRIVFDGQSLDTLNRRQllPVRHRIQVVF 368
Cdd:PRK13549 275 I-KR-------VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYpgRWEGEIFIDGKPVKIRNPQQ--AIAQGIAMVP 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 369 QD-------PNSSL--NPRLNVLQIIEEGLRVHQPT-LSGAQREQQ---VKAVmmevglDPETRhryPAEFSGGQRQRIA 435
Cdd:PRK13549 345 EDrkrdgivPVMGVgkNITLAALDRFTGGSRIDDAAeLKTILESIQrlkVKTA------SPELA---IARLSGGNQQKAV 415
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 436 VARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:PRK13549 416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQG-VAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-230 |
2.02e-38 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 139.91 E-value: 2.02e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPpavyLSGDIRFHGESLlhaseqt 85
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKS-TLLRIIAGLERP----TSGEVLVDGEPV------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 lRGVrGNKIAMIFQEPmvSLNPLHTLEKQLyeVLSL-HRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQR 164
Cdd:cd03293 69 -TGP-GPDRGYVFQQD--ALLPWLTVLDNV--ALGLeLQGVPKAEARERAEELLELVGLSGFENA---YPHQLSGGMRQR 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVM 230
Cdd:cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
305-527 |
2.34e-38 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 141.09 E-value: 2.34e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDT----------LNRRQLLPVRHRIQVVFQ 369
Cdd:COG4598 27 VSLTARKGDVISIIGSSGSGKST----FLRCINlletpDSGEIRVGGEEIRLkpdrdgelvpADRRQLQRIRTRLGMVFQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 370 DPNssLNPRLNVLQ-IIEEGLRVHQptLSGAQREQQVKAVMMEVGLdPETRHRYPAEFSGGQRQRIAVARALILKPSLII 448
Cdd:COG4598 103 SFN--LWSHMTVLEnVIEAPVHVLG--RPKAEAIERAEALLAKVGL-ADKRDAYPAHLSGGQQQRAAIARALAMEPEVML 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 449 LDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:COG4598 178 FDEPTSALDPELVGEVLKVMRDLAEEGR-TMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEVFGNPKSERLRQFLS 255
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
305-508 |
5.19e-38 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 138.97 E-value: 5.19e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLhPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSL-DTLNRRQLLPVRHRIQVVFQdpNSSLNPR 378
Cdd:cd03297 17 IDFDL-NEEVTGIFGASGAGKST----LLRCIAglekpDGGTIVLNGTVLfDSRKKINLPPQQRKIGLVFQ--QYALFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQPtlsgAQREQQVKAVMMEVGLDPETRhRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:cd03297 90 LNVRENLAFGLKRKRN----REDRISVDELLDLLGLDHLLN-RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDR 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03297 165 ALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
305-518 |
5.78e-38 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 139.29 E-value: 5.78e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLdtlnrRQLLPVRHRIQVVFQdpNSSLNPRL 379
Cdd:cd03300 19 VSLDIKEGEFFTLLGPSGCGKTT----LLRLIAgfetpTSGEILLDGKDI-----TNLPPHKRPVNTVFQ--NYALFPHL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03300 88 TVFENIAFGLRLKK--LPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:cd03300 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-234 |
7.42e-38 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 136.76 E-value: 7.42e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGESLLHASE 83
Cdd:cd03230 1 IEVRNLSKRYGK----KTALDDISLTVEKGEIYGLLGPNGAGKT-TLIKIIlgLLKPD------SGEIKVLGKDIKKEPE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRgvrgnKIAMIFQEPMvslnplhtlekqLYEVLSLHrgmrreaaraEMIgcldrvgirqasqrlrdyphQLSGGERQ 163
Cdd:cd03230 70 EVKR-----RIGYLPEEPS------------LYENLTVR----------ENL--------------------KLSGGMKQ 102
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGR 172
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
8-234 |
9.93e-38 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 138.05 E-value: 9.93e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHaSEQTLR 87
Cdd:cd03262 3 IKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKS-TLLRCINLLEEPD----SGTIIIDGLKLTD-DKKNIN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRgNKIAMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQRVMI 167
Cdd:cd03262 73 ELR-QKVGMVFQQ--FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGL---ADKADAYPAQLSGGQQQRVAI 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 168 AMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
269-509 |
1.13e-37 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 138.34 E-value: 1.13e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 269 PAGQAPLLEVDKLRVAFPIRKG---ILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEG 340
Cdd:COG4181 2 SSSSAPIIELRGLTKTVGTGAGeltILKG----------ISLEVEAGESVAIVGASGSGKST----LLGLLAgldrpTSG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 341 RIVFDGQSLDTLNRRQLLPVR-HRIQVVFQdpNSSLNPRL----NVLQIIEeglrvhqptLSGAQREQQVKAVMME-VGL 414
Cdd:COG4181 68 TVRLAGQDLFALDEDARARLRaRHVGFVFQ--SFQLLPTLtaleNVMLPLE---------LAGRRDARARARALLErVGL 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 415 DPETRHrYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVrALCH 494
Cdd:COG4181 137 GHRLDH-YPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALA-ARCD 214
|
250
....*....|....*
gi 804913277 495 QVIVLRQGEVVEQGQ 509
Cdd:COG4181 215 RVLRLRAGRLVEDTA 229
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
305-526 |
1.49e-37 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 138.59 E-value: 1.49e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQdpNSSLNPRLNVLQ 383
Cdd:cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEpTSGEIFIDGEDIREQDPVEL---RRKIGYVIQ--QIGLFPHMTVEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIeeGLrvhQPTLSG---AQREQQVKAVMMEVGLDPET-RHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03295 95 NI--AL---VPKLLKwpkEKIRERADELLALVGLDPAEfADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:cd03295 170 TRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFV 236
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
305-454 |
1.72e-37 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 135.08 E-value: 1.72e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPNssLNPRL 379
Cdd:pfam00005 4 VSLTLNPGEILALVGPNGAGKST----LLKLIAgllspTEGTILLDGQDLTDDERKSL---RKEIGYVFQDPQ--LFPRL 74
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 380 NVLQIIEEGLRVhqPTLSGAQREQQVKAVMMEVGL--DPETR-HRYPAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:pfam00005 75 TVRENLRLGLLL--KGLSKREKDARAEEALEKLGLgdLADRPvGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
305-515 |
3.64e-37 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 137.95 E-value: 3.64e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST-----TGLallrLIRSEGRIVFDGqsLDTLNRRQLLPVRHRIQVVFQDPNSSL---- 375
Cdd:TIGR04520 21 VSLSIEKGEFVAIIGHNGSGKSTlakllNGL----LLPTSGKVTVDG--LDTLDEENLWEIRKKVGMVFQNPDNQFvgat 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 376 ----------N---PRLNVLQIIEEGLrvhqptlsgaqreqqvKAVMMEvgldpETRHRYPAEFSGGQRQRIAVARALIL 442
Cdd:TIGR04520 95 veddvafgleNlgvPREEMRKRVDEAL----------------KLVGME-----DFRDREPHLLSGGQKQRVAIAGVLAM 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 443 KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVrALCHQVIVLRQGEVVEQGQCERVFT 515
Cdd:TIGR04520 154 RPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEA-VLADRVIVMNKGKIVAEGTPREIFS 225
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-237 |
5.44e-37 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 136.11 E-value: 5.44e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQHVRPvvnaISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAvylSGDIRFHGESLLHase 83
Cdd:cd03259 1 LELKGLSKTYGSVRALDD----LSLTVEPGEFLALLGPSGCGKT----TLLRLIAglERPD---SGEILIDGRDVTG--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 qtlRGVRGNKIAMIFQEPmvSLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQ 163
Cdd:cd03259 67 ---VPPERRNIGMVFQDY--ALFPHLTVAENIAFGLKL-RGVPKAEIRARVRELLELVGLEGLLNR---YPHELSGGQQQ 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-236 |
7.55e-37 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 136.54 E-value: 7.55e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRqqqHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQT 85
Cdd:cd03256 1 IEVENLSKTYP---NGKKALKDVSLSINPGEFVALIGPSGAGKS-TLLRCLNGLVEPT----SGSVLIDGTDINKLKGKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGVRGnKIAMIFQEPMVsLNPLHTLEKQLYEVL---SLHRGMRR---EAARAEMIGCLDRVGIR-QASQRLRdyphQLS 158
Cdd:cd03256 73 LRQLRR-QIGMIFQQFNL-IERLSVLENVLSGRLgrrSTWRSLFGlfpKEEKQRALAALERVGLLdKAYQRAD----QLS 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
7-236 |
9.52e-37 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 134.10 E-value: 9.52e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 7 AIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTAL-SILRLLPTppavyLSGDIRFHGESLLHASEQT 85
Cdd:cd03214 1 EVENLSVGYGG----RTVLDDLSLSIEAGEIVGILGPNGAGKS-TLLkTLAGLLKP-----SSGEILLDGKDLASLSPKE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRgvrgNKIAMIFQepmvslnplhtlekqlyevlslhrgmrreaaraemigCLDRVGIRQASQRLRDyphQLSGGERQRV 165
Cdd:cd03214 71 LA----RKIAYVPQ-------------------------------------ALELLGLAHLADRPFN---ELSGGERQRV 106
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 166 MIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
6-257 |
2.04e-36 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 134.88 E-value: 2.04e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFrQQQHVRpvvnaISLQVNAGETLALVGESGSGKSvTALSILrllptppAVYL---SGDIRFHGESLLHAS 82
Cdd:COG3840 2 LRLDDLTYRY-GDFPLR-----FDLTIAAGERVAILGPSGAGKS-TLLNLI-------AGFLppdSGRILWNGQDLTALP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EqtlrGVRgnKIAMIFQEpmvslNPL--H-TLEKQLYevLSLHRGMR-REAARAEMIGCLDRVGIRQASQRLrdyPHQLS 158
Cdd:COG3840 68 P----AER--PVSMLFQE-----NNLfpHlTVAQNIG--LGLRPGLKlTAEQRAQVEQALERVGLAGLLDRL---PGQLS 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVEN 238
Cdd:COG3840 132 GGQRQRVALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAAD 211
|
250
....*....|....*....
gi 804913277 239 QRADTLLSAPTHPYTQKLL 257
Cdd:COG3840 212 GPTAALLDGEPPPALAAYL 230
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
305-508 |
2.05e-36 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 135.37 E-value: 2.05e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRqllpVRHRIQVVFQDPNssLNPRL 379
Cdd:COG4555 20 VSFTAKDGEITGLLGPNGAGKTT----LLRMLagllkPDSGSILIDGEDVRKEPRE----ARRQIGVLPDERG--LYDRL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:COG4555 90 TVRENIRYFAELYG--LFDEELKKRIEELIELLGLE-EFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDVM 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:COG4555 167 ARRLLREILRALKKEGK-TVLFSSHIMQEVEALCDRVVILHKGKVVAQG 214
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-237 |
2.14e-36 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 134.62 E-value: 2.14e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSIL-RLLPTPPAVYLSGDIRFHGESLLHASEQ 84
Cdd:cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKS-TLLRLLnRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRgnKIAMIFQEPmvslNPLHtleKQLYEVLSL---HRGMRREAARAEMIG-CLDRVGI-RQASQRLRdyPHQLSG 159
Cdd:cd03260 76 VLELRR--RVGMVFQKP----NPFP---GSIYDNVAYglrLHGIKLKEELDERVEeALRKAALwDEVKDRLH--ALGLSG 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElnMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVE 220
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
305-526 |
2.55e-36 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 134.88 E-value: 2.55e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNrrqllPVRHRIQVVFQDPNssLNPRL 379
Cdd:COG3840 18 FDLTIAAGERVAILGPSGAGKST----LLNLIAgflppDSGRILWNGQDLTALP-----PAERPVSMLFQENN--LFPHL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRvhqPT--LSGAQReQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:COG3840 87 TVAQNIGLGLR---PGlkLTAEQR-AQVEQALERVGLA-GLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:COG3840 162 PALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLDGEPPPALAAYL 230
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
6-260 |
4.87e-36 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 134.35 E-value: 4.87e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRqqqHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASEQ 84
Cdd:cd03295 1 IEFENVTKRYG---GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIePT------SGEIFIDGEDIREQDPV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRgvrgNKIAMIFQEpmVSLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQASQRLRdYPHQLSGGERQR 164
Cdd:cd03295 72 ELR----RKIGYVIQQ--IGLFPHMTVEENIALVPKL-LKWPKEKIRERADELLALVGLDPAEFADR-YPHELSGGQQQR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTL 244
Cdd:cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
250
....*....|....*.
gi 804913277 245 LSAPTHPYTQKLLNSE 260
Cdd:cd03295 224 LRSPANDFVAEFVGAD 239
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
305-523 |
5.10e-36 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 137.13 E-value: 5.10e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLnrrqllPVRHR-IQVVFQDPnsSLNPR 378
Cdd:COG3839 22 IDLDIEDGEFLVLLGPSGCGKST----LLRMIAgledpTSGEILIGGRDVTDL------PPKDRnIAMVFQSY--ALYPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:COG3839 90 MTVYENIAFPLKLRK--VPKAEIDRRVREAAELLGLED-LLDRKPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGqcervftAPQQAYTR 523
Cdd:COG3839 167 KLRVEMRAEIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQQVG-------TPEELYDR 224
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
25-185 |
6.55e-36 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 130.85 E-value: 6.55e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 25 VNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASEQTLRGvrgnKIAMIFQEPmv 103
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLsPT------EGTILLDGQDLTDDERKSLRK----EIGYVFQDP-- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 104 SLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIR-QASQRLRDYPHQLSGGERQRVMIAMALLTRPELLIADE 182
Cdd:pfam00005 69 QLFPRLTVRENLRLGLLL-KGLSKREKDARAEEALEKLGLGdLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
...
gi 804913277 183 PTT 185
Cdd:pfam00005 148 PTA 150
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
305-504 |
6.74e-36 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 133.04 E-value: 6.74e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLdTLNRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:cd03262 19 IDLTVKKGEVVVIIGPSGSGKST----LLRCINlleepDSGTIIIDGLKL-TDDKKNINELRQKVGMVFQQFN--LFPHL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLR-VHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:cd03262 92 TVLENITLAPIkVKG--MSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 804913277 459 TVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:cd03262 169 ELVGEVLDVMKDLAEEG-MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
305-517 |
8.51e-36 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 136.77 E-value: 8.51e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSL-DTLNRRQLLPVRHRIQVVFQDPnsSLNPR 378
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTT----LLRAIaglerPDSGRIRLGGEVLqDSARGIFLPPHRRRIGYVFQEA--RLFPH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQPTLSGAQREQQVKavMMEVG--LDpetrhRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:COG4148 92 LSVRGNLLYGRKRAPRAERRISFDEVVE--LLGIGhlLD-----RRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAAL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 457 DKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:COG4148 165 DLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
25-252 |
9.78e-36 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 134.31 E-value: 9.78e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 25 VNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEpmV 103
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIePT------SGKVLIDGQDIAAMSRKELRELRRKKISMVFQS--F 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 104 SLNPLHT-LEKQLY--EVLSLHRGMRREAARAEmigcLDRVGIRQASQRlrdYPHQLSGGERQRVMIAMALLTRPELLIA 180
Cdd:cd03294 112 ALLPHRTvLENVAFglEVQGVPRAEREERAAEA----LELVGLEGWEHK---YPDELSGGMQQRVGLARALAVDPDILLM 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 181 DEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPY 252
Cdd:cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY 256
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
254-508 |
2.05e-35 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 139.53 E-value: 2.05e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 254 QKLLNSEPT----GDPVPLPAGQAPLlEVDKLRVAFPIRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtg 329
Cdd:COG1132 315 FELLDEPPEipdpPGAVPLPPVRGEI-EFENVSFSYPGDRPVLKD----------ISLTIPPGETVALVGPSGSGKST-- 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 330 LA--LLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSlnprlnvlqiIEEGLRVHQPTLSgaqrEQ 403
Cdd:COG1132 382 LVnlLLRFYDpTSGRILIDGVDIRDLTLESL---RRQIGVVPQDTflfSGT----------IRENIRYGRPDAT----DE 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 404 QVKAVMMEVGLDPETRhRYP-----------AEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLq 472
Cdd:COG1132 445 EVEEAAKAAQAHEFIE-ALPdgydtvvgergVNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERL- 522
|
250 260 270
....*....|....*....|....*....|....*.
gi 804913277 473 QKHRLAyIFISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:COG1132 523 MKGRTT-IVIAHRLSTIRN-ADRILVLDDGRIVEQG 556
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
305-504 |
2.10e-35 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 130.21 E-value: 2.10e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLdtlnRRQLLPVRHRIQVVFQDPnsSLNPRLNVLQ 383
Cdd:cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKpDSGEIKVLGKDI----KKEPEEVKRRIGYLPEEP--SLYENLTVRE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEeglrvhqptlsgaqreqqvkavmmevgldpetrhrypaeFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:cd03230 93 NLK---------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRRE 133
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 464 ILALLKSLQQKHRLAyIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:cd03230 134 FWELLRELKKEGKTI-LLSSHILEEAERLCDRVAILNNGRI 173
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
25-504 |
3.08e-35 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 138.03 E-value: 3.08e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 25 VNAISLQVNAGETLALVGESGSGKSvTALSILRLLpTPPAVYlSGDIRFHGESLlhaSEQTLRGVRGNKIAMIFQEPMVS 104
Cdd:TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKS-TLMKILSGV-YPHGTW-DGEIYWSGSPL---KASNIRDTERAGIVIIHQELTLV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 105 LNpLHTLEKQLYEVLSLHRGMRREAA----RAEMIGCLDRVGIRQASQRLRDYphqlSGGERQRVMIAMALLTRPELLIA 180
Cdd:TIGR02633 91 PE-LSVAENIFLGNEITLPGGRMAYNamylRAKNLLRELQLDADNVTRPVGDY----GGGQQQLVEIAKALNKQARLLIL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 181 DEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCV-----ENQRADTLLSAPTHPYTQK 255
Cdd:TIGR02633 166 DEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVatkdmSTMSEDDIITMMVGREITS 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 256 LLNSEP--TGDPVplpagqaplLEVDKLRVAFPIRKGIlKRVVDhnvvvnnISFTLHPGETLGLVGESGSGKSTTGLALL 333
Cdd:TIGR02633 245 LYPHEPheIGDVI---------LEARNLTCWDVINPHR-KRVDD-------VSFSLRRGEILGVAGLVGAGRTELVQALF 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 334 RLI--RSEGRIVFDGQSLDTLNRRQllPVRHRIQVVFQD-PNSSLNPRLNVLQIIEegLRVHQP-----TLSGAQREQQV 405
Cdd:TIGR02633 308 GAYpgKFEGNVFINGKPVDIRNPAQ--AIRAGIAMVPEDrKRHGIVPILGVGKNIT--LSVLKSfcfkmRIDAAAELQII 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 406 KAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHrLAYIFISHD 485
Cdd:TIGR02633 384 GSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG-VAIIVVSSE 462
|
490
....*....|....*....
gi 804913277 486 LHVVRALCHQVIVLRQGEV 504
Cdd:TIGR02633 463 LAEVLGLSDRVLVIGEGKL 481
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
305-526 |
3.34e-35 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 133.68 E-value: 3.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTglalLRLI-----RSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQdpNSSLNPRL 379
Cdd:COG1125 21 LSLTIPAGEFTVLVGPSGCGKTTT----LRMInrliePTSGRILIDGEDIRDLDPVEL---RRRIGYVIQ--QIGLFPHM 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEeglRVhqPTLSGAQREQQVKAV--MME-VGLDPET-RHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:COG1125 92 TVAENIA---TV--PRLLGWDKERIRARVdeLLElVGLDPEEyRDRYPHELSGGQQQRVGVARALAADPPILLMDEPFGA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 456 LDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:COG1125 167 LDPITREQLQDELLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREGRIVQYDTPEEILANPANDFVADFV 237
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
8-235 |
3.41e-35 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 131.12 E-value: 3.41e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTAL-SILRLLPtpPAvylSGDIRFHGESLlhaseqtl 86
Cdd:cd03235 2 VEDLTVSYGG----HPVLEDVSFEVKPGEFLAIVGPNGAGKS-TLLkAILGLLK--PT---SGSIRVFGKPL-------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 87 rGVRGNKIAMIFQEPMVSLN-PLhtlekQLYEVLSL----HRGMRR---EAARAEMIGCLDRVGIRQ-ASQRLRdyphQL 157
Cdd:cd03235 64 -EKERKRIGYVPQRRSIDRDfPI-----SVRDVVLMglygHKGLFRrlsKADKAKVDEALERVGLSElADRQIG----EL 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKC 235
Cdd:cd03235 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-234 |
3.51e-35 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 130.00 E-value: 3.51e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLlhASEQT 85
Cdd:cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKS-TLLRCIAGLEEPD----SGSILIDGEDL--TDLED 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGVRGNKIAMIFQEPmvslnplhtlekQLYEVLSLhrgmrreaaraemigcLDRVGIRqasqrlrdyphqLSGGERQRV 165
Cdd:cd03229 70 ELPPLRRRIGMVFQDF------------ALFPHLTV----------------LENIALG------------LSGGQQQRV 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 166 MIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
8-241 |
3.80e-35 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 131.33 E-value: 3.80e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGESLLHAS 82
Cdd:COG2884 4 FENVSKRYPGG---REALSDVSLEIEKGEFVFLTGPSGAGKS----TLLKLLygeerPT------SGQVLVNGQDLSRLK 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGVRgNKIAMIFQEpmvslnplHTL--EKQLYE--VLSLH-RGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQL 157
Cdd:COG2884 71 RREIPYLR-RRIGVVFQD--------FRLlpDRTVYEnvALPLRvTGKSRKEIRRRVREVLDLVGL---SDKAKALPHEL 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelnMG--LLFITHNLSIVKKLADSVAVMQHGKC 235
Cdd:COG2884 139 SGGEQQRVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINR---RGttVLIATHDLELVDRMPKRVLELEDGRL 215
|
....*.
gi 804913277 236 VENQRA 241
Cdd:COG2884 216 VRDEAR 221
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
259-508 |
4.35e-35 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 138.75 E-value: 4.35e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 259 SEPTGDPV-PLPAGQAPLLEVDKLRVAFPirkgilkrvVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR 337
Cdd:COG4987 316 PPAVTEPAePAPAPGGPSLELEDVSFRYP---------GAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLD 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 338 -SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSlnprlnvlqiIEEGLRVHQPTLSgaqrEQQVKAVMMEVG 413
Cdd:COG4987 387 pQSGSITLGGVDLRDLDEDDL---RRRIAVVPQRPhlfDTT----------LRENLRLARPDAT----DEELWAALERVG 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 414 LDP---------ETR-HRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLayIFIS 483
Cdd:COG4987 450 LGDwlaalpdglDTWlGEGGRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTV--LLIT 527
|
250 260
....*....|....*....|....*
gi 804913277 484 HDLHVVrALCHQVIVLRQGEVVEQG 508
Cdd:COG4987 528 HRLAGL-ERMDRILVLEDGRIVEQG 551
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
5-236 |
6.62e-35 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 131.27 E-value: 6.62e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVrpvVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASE 83
Cdd:TIGR02315 1 MLEVENLSKVYPNGKQA---LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVePS------SGSILLEGTDITKLRG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVRgNKIAMIFQEPMVsLNPLHTLEKQLYEVLSLHRGMRR------EAARAEMIGCLDRVGI-RQASQRLRdyphQ 156
Cdd:TIGR02315 72 KKLRKLR-RRIGMIFQHYNL-IERLTVLENVLHGRLGYKPTWRSllgrfsEEDKERALSALERVGLaDKAYQRAD----Q 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:TIGR02315 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
8-258 |
7.24e-35 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 131.41 E-value: 7.24e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAVYLS-GDIRFHGESLLHASEQTL 86
Cdd:PRK11264 6 VKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKT-TLLRCINLLEQPEAGTIRvGDITIDTARSLSQQKGLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 87 RGVRgNKIAMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQRVM 166
Cdd:PRK11264 81 RQLR-QHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL---AGKETSYPRRLSGGQQQRVA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 167 IAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLS 246
Cdd:PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
250
....*....|..
gi 804913277 247 APTHPYTQKLLN 258
Cdd:PRK11264 234 DPQQPRTRQFLE 245
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
305-513 |
7.30e-35 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 130.76 E-value: 7.30e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI----------RSEGRIVFDGQSLDTLNRRQLLpVRHRIQVVFQDPNss 374
Cdd:cd03260 19 ISLDIPKGEITALIGPSGCGKST----LLRLLnrlndlipgaPDEGEVLLDGKDIYDLDVDVLE-LRRRVGMVFQKPN-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 375 lnP-RLNVLQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLDPET-RHRYPAEFSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:cd03260 92 --PfPGSIYDNVAYGLRLHG-IKLKEELDERVEEALRKAALWDEVkDRLHALGLSGGQQQRLCLARALANEPEVLLLDEP 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 453 TSSLDKTVQAQILALLKSLqqKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERV 513
Cdd:cd03260 169 TSALDPISTAKIEELIAEL--KKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
305-506 |
1.40e-34 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 129.78 E-value: 1.40e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLLPVRHR-IQVVFQdpNSSLNPR 378
Cdd:TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKST----LLHLLGgldnpTSGEVLFNGQSLSKLSSNERAKLRNKkLGFIYQ--FHHLLPD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQiieeglRVHQPTLSGAQ--REQQVKAVMM--EVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:TIGR02211 98 FTALE------NVAMPLLIGKKsvKEAKERAYEMleKVGLEHRINHR-PSELSGGERQRVAIARALVNQPSLVLADEPTG 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 455 SLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALcHQVIVLRQGEVVE 506
Cdd:TIGR02211 171 NLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLFN 221
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
28-234 |
1.67e-34 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 129.34 E-value: 1.67e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNaGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEpmVSLNP 107
Cdd:cd03297 17 IDFDLN-EEVTGIFGASGAGKS-TLLRCIAGLEKPDG----GTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ--YALFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 108 LHTLEKQLYEVLSLHRGMRREAARAEMigcLDRVGIRQASQRlrdYPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187
Cdd:cd03297 89 HLNVRENLAFGLKRKRNREDRISVDEL---LDLLGLDHLLNR---YPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 804913277 188 DVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGR 209
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-506 |
2.07e-34 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 135.96 E-value: 2.07e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFrqqqHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHgesllhaseqt 85
Cdd:COG0488 1 LENLSKSF----GGRPLLDDVSLSINPGDRIGLVGRNGAGKS-TLLKILagELEPD------SGEVSIP----------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 lrgvRGNKIAMIFQEP------------MVSLNPLHTLEKQLYEVLS--------LHRGMRREA-----------ARAEM 134
Cdd:COG0488 59 ----KGLRIGYLPQEPpldddltvldtvLDGDAELRALEAELEELEAklaepdedLERLAELQEefealggweaeARAEE 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 135 IgcLDRVGIRQA--SQRLRDyphqLSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQaqilsLLRELQRELNMGLL 211
Cdd:COG0488 135 I--LSGLGFPEEdlDRPVSE----LSGGWRRRVALARALLSEPDLLLLDEPTNHLDLeSIE-----WLEEFLKNYPGTVL 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 212 FITHNLSIVKKLADSVAVMQHGKCV----------------------ENQRADTLL----------SAPTHPYTQ----- 254
Cdd:COG0488 204 VVSHDRYFLDRVATRILELDRGKLTlypgnysayleqraerleqeaaAYAKQQKKIakeeefirrfRAKARKAKQaqsri 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 255 ----KLLNSEPTGD--------PVPLPAGQaPLLEVDKLRVAFPIRKgILKRvvdhnvvvnnISFTLHPGETLGLVGESG 322
Cdd:COG0488 284 kaleKLEREEPPRRdktveirfPPPERLGK-KVLELEGLSKSYGDKT-LLDD----------LSLRIDRGDRIGLIGPNG 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 323 SGKSTtglaLLRLIRSE-----GRIVFdGQSLdtlnrrqllpvrhRIQVVFQDpNSSLNPRLNVLQIIEEGlrvhqptlS 397
Cdd:COG0488 352 AGKST----LLKLLAGElepdsGTVKL-GETV-------------KIGYFDQH-QEELDPDKTVLDELRDG--------A 404
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 398 GAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD-KTVQAQILALlkslqqkhr 476
Cdd:COG0488 405 PGGTEQEVRGYLGRFLFSGDDAFKPVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDiETLEALEEAL--------- 475
|
570 580 590
....*....|....*....|....*....|....
gi 804913277 477 LAY----IFISHDLHVVRALCHQVIVLRQGEVVE 506
Cdd:COG0488 476 DDFpgtvLLVSHDRYFLDRVATRILEFEDGGVRE 509
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
23-504 |
3.33e-34 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 135.18 E-value: 3.33e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEqtlrgVRGNK--IAMIFQE 100
Cdd:PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKS-TLMKIIAGIVPPD----SGTLEIGGNPCARLTP-----AKAHQlgIYLVPQE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 101 PMVSLNpLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASqrlrdyphqLSGGERQRVMIAMALLTRPELLIA 180
Cdd:PRK15439 95 PLLFPN-LSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGS---------LEVADRQIVEILRGLMRDSRILIL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 181 DEPTTALDVSVQAQILSLLRELQrELNMGLLFITHNLSIVKKLADSVAVMQHGKCVenqradtlLSAPTHPYTQKLLNS- 259
Cdd:PRK15439 165 DEPTASLTPAETERLFSRIRELL-AQGVGIVFISHKLPEIRQLADRISVMRDGTIA--------LSGKTADLSTDDIIQa 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 260 -EPTGDPVPLPAGQAPLLEVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLAL--LRLI 336
Cdd:PRK15439 236 iTPAAREKSLSASQKLWLELPGNRRQQAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLygLRPA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 337 RSeGRIVFDGQ---SLDTLNRRQL----LPVRHRIQVVFQDpnSSLnpRLNVLqiieeGLRVHQPTLsgAQREQQVKAVM 409
Cdd:PRK15439 316 RG-GRIMLNGKeinALSTAQRLARglvyLPEDRQSSGLYLD--APL--AWNVC-----ALTHNRRGF--WIKPARENAVL 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 410 mevgldpETRHR----------YPAE-FSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHrLA 478
Cdd:PRK15439 384 -------ERYRRalnikfnhaeQAARtLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN-VA 455
|
490 500
....*....|....*....|....*.
gi 804913277 479 YIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:PRK15439 456 VLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
20-255 |
5.62e-34 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 128.59 E-value: 5.62e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 20 HVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESL---LHASEQTLRGVRGnKIAM 96
Cdd:COG4161 13 GSHQALFDINLECPSGETLVLLGPSGAGKS-SLLRVLNLLETPD----SGQLNIAGHQFdfsQKPSEKAIRLLRQ-KVGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 97 IFQEpmVSLNPLHTLEKQLYE----VLslhrGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQRVMIAMALL 172
Cdd:COG4161 87 VFQQ--YNLWPHLTVMENLIEapckVL----GLSKEQAREKAMKLLARLRLTDKADR---FPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 173 TRPELLIADEPTTALDVSVQAQILSLLRELQrELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRAdtllSAPTHPY 252
Cdd:COG4161 158 MEPQVLLFDEPTAALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDA----SHFTQPQ 232
|
...
gi 804913277 253 TQK 255
Cdd:COG4161 233 TEA 235
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
305-508 |
5.66e-34 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 126.78 E-value: 5.66e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQdpnsslnprlnvlq 383
Cdd:cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKpSSGEILLDGKDLASLSPKEL---ARKIAYVPQ-------------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iieeglrvhqptlsgaqreqqvkaVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:cd03214 81 ------------------------ALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 804913277 464 ILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03214 136 LLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
274-526 |
6.58e-34 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 131.08 E-value: 6.58e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 274 PLLEVDKLRVAFPIRKGILKrvvdhnvVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLN 353
Cdd:PRK15093 2 PLLDIRNLTIEFKTSDGWVK-------AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 354 RRQLLP------VRHRIQVVFQDPNSSLNPRLNV-LQIIEEglrVHQPTLSG------AQREQQVKAVMMEVGL-DP-ET 418
Cdd:PRK15093 75 LLRLSPrerrklVGHNVSMIFQEPQSCLDPSERVgRQLMQN---IPGWTYKGrwwqrfGWRKRRAIELLHRVGIkDHkDA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 419 RHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIV 498
Cdd:PRK15093 152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231
|
250 260
....*....|....*....|....*...
gi 804913277 499 LRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQALI 259
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
273-508 |
7.47e-34 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 128.62 E-value: 7.47e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRVAFpirkGILKrvvdhnvVVNNISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQ 347
Cdd:COG0411 2 DPLLEVRGLTKRF----GGLV-------AVDDVSLEVERGEIVGLIGPNGAGKTT----LFNLItgfyrPTSGRILFDGR 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 348 SLDTLNRRQLlpVRHRIQVVFQdpNSSLNPRLNVLQIIEEGLRVHQ---------PTLSGAQREQQVKAVMME----VGL 414
Cdd:COG0411 67 DITGLPPHRI--ARLGIARTFQ--NPRLFPELTVLENVLVAAHARLgrgllaallRLPRARREEREARERAEEllerVGL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 415 DPEtRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCH 494
Cdd:COG0411 143 ADR-ADEPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLAD 221
|
250
....*....|....
gi 804913277 495 QVIVLRQGEVVEQG 508
Cdd:COG0411 222 RIVVLDFGRVIAEG 235
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-258 |
7.80e-34 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 134.89 E-value: 7.80e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFRQQQhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtppavYLSGDIRFHGESLLHA 81
Cdd:COG4987 330 GGPSLELEDVSFRYPGAG--RPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLD-----PQSGSITLGGVDLRDL 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRgvrgNKIAMIFQEPmvslnplHTLEKQLYEVLSLHRGmrrEAARAEMIGCLDRVGIRQASQRLRD--------Y 153
Cdd:COG4987 403 DEDDLR----RRIAVVPQRP-------HLFDTTLRENLRLARP---DATDEELWAALERVGLGDWLAALPDgldtwlgeG 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHG 233
Cdd:COG4987 469 GRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA--GRTVLLITHRLAGLER-MDRILVLEDG 545
|
250 260
....*....|....*....|....*
gi 804913277 234 KCVENQRADTLLSapTHPYTQKLLN 258
Cdd:COG4987 546 RIVEQGTHEELLA--QNGRYRQLYQ 568
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-237 |
8.42e-34 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 129.36 E-value: 8.42e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSvgFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtpPAvylSGDIRFHGESLlh 80
Cdd:PRK13635 1 MKEEIIRVEHIS--FRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PE---AGTITVGGMVL-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 aSEQTLRGVRgNKIAMIFQEP-------MVSLNPLHTLEKQlyevlslhrGMRREaaraEMI----GCLDRVGIRQASQR 149
Cdd:PRK13635 72 -SEETVWDVR-RQVGMVFQNPdnqfvgaTVQDDVAFGLENI---------GVPRE----EMVervdQALRQVGMEDFLNR 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 150 lrdYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKlADSVAV 229
Cdd:PRK13635 137 ---EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIV 212
|
....*...
gi 804913277 230 MQHGKCVE 237
Cdd:PRK13635 213 MNKGEILE 220
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
6-252 |
1.16e-33 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 135.35 E-value: 1.16e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSvgFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGESLLH 80
Cdd:COG2274 474 IELENVS--FRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKS----TLLKLLlglyePT------SGRILIDGIDLRQ 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRgvrgNKIAMIFQEPMVslnplhtLEKQLYEVLSLHRgmrREAARAEMIGCLDRVGIRQASQRLrdyPH----- 155
Cdd:COG2274 542 IDPASLR----RQIGVVLQDVFL-------FSGTIRENITLGD---PDATDEEIIEAARLAGLHDFIEAL---PMgydtv 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 ------QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVkKLADSVAV 229
Cdd:COG2274 605 vgeggsNLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTI-RLADRIIV 681
|
250 260
....*....|....*....|...
gi 804913277 230 MQHGKCVENQRADTLLSAPTHPY 252
Cdd:COG2274 682 LDKGRIVEDGTHEELLARKGLYA 704
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
305-518 |
1.31e-33 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 127.82 E-value: 1.31e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRL-----IRSEGRIVFDGQSLD---TLNRRQLLPVRHRIQVVFQDPNssLN 376
Cdd:COG4161 21 INLECPSGETLVLLGPSGAGKSS----LLRVlnlleTPDSGQLNIAGHQFDfsqKPSEKAIRLLRQKVGMVFQQYN--LW 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLQ-IIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:COG4161 95 PHLTVMEnLIEAPCKVLG--LSKEQAREKAMKLLARLRLT-DKADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 456 LDKTVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCErVFTAPQ 518
Cdd:COG4161 172 LDPEITAQVVEIIRELSQTG-ITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDAS-HFTQPQ 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
305-508 |
1.40e-33 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 126.60 E-value: 1.40e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTglalLRLIR-----SEGRIVFDGqsldtlNRRQLLPVRHR-IQVVFQdpNSSLNPR 378
Cdd:cd03301 19 LNLDIADGEFVVLLGPSGCGKTTT----LRMIAgleepTSGRIYIGG------RDVTDLPPKDRdIAMVFQ--NYALYPH 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:cd03301 87 MTVYDNIAFGLKLRK--VPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03301 164 KLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
305-499 |
1.80e-33 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 126.49 E-value: 1.80e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTlnrrqllpVRHRIQVVFQDPNSSLNPRL 379
Cdd:cd03235 18 VSFEVKPGEFLAIVGPNGAGKST----LLKAIlgllkPTSGSIRVFGKPLEK--------ERKRIGYVPQRRSIDRDFPI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPTLSGAQRE--QQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:cd03235 86 SVRDVVLMGLYGHKGLFRRLSKAdkAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 804913277 458 KTVQAQILALLKSLQQKHRLAyIFISHDLHVVRALCHQVIVL 499
Cdd:cd03235 165 PKTQEDIYELLRELRREGMTI-LVVTHDLGLVLEYFDRVLLL 205
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-234 |
1.80e-33 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 126.08 E-value: 1.80e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQHVRPVvnaiSLQVNAGETLALVGESGSGKSvTALSILRLLpTPPAvylSGDIRFHGESLLHASEQT 85
Cdd:COG4619 1 LELEGLSFRVGGKPILSPV----SLTLEAGECVAITGPSGSGKS-TLLRALADL-DPPT---SGEIYLDGKPLSAMPPPE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGvrgnKIAMIFQEPMVslnPLHTLEKQLYEVLSL-HRGMRREAARAEmigcLDRVGIrqaSQRLRDYP-HQLSGGERQ 163
Cdd:COG4619 72 WRR----QVAYVPQEPAL---WGGTVRDNLPFPFQLrERKFDRERALEL----LERLGL---PPDILDKPvERLSGGERQ 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:COG4619 138 RLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGR 208
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
8-227 |
3.22e-33 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 125.42 E-value: 3.22e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTLR 87
Cdd:TIGR03608 1 LKNISKKFGD----KVILDDLNLTIEKGKMYAIIGESGSGKS-TLLNIIGLLEKFD----SGQVYLNGQETPPLNSKKAS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRGNKIAMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAaRAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQRVMI 167
Cdd:TIGR03608 72 KFRREKLGYLFQN--FALIENETVEENLDLGLKYKKLSKKEK-REKKKEALEKVGL---NLKLKQKIYELSGGEQQRVAL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 168 AMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKlADSV 227
Cdd:TIGR03608 146 ARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAKQ-ADRV 203
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
28-254 |
3.96e-33 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 126.28 E-value: 3.96e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESL---LHASEQTLRGVRgNKIAMIFQEpmVS 104
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKS-SLLRVLNLLEMPR----SGTLNIAGNHFdfsKTPSDKAIRELR-RNVGMVFQQ--YN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 105 LNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQRVMIAMALLTRPELLIADEPT 184
Cdd:PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR---FPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 185 TALDVSVQAQILSLLRELQrELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLlsapTHPYTQ 254
Cdd:PRK11124 170 AALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF----TQPQTE 234
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
305-485 |
7.04e-33 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 124.52 E-value: 7.04e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST-----TGlALLRLIRSEGRIVFDGQSLDTLNrrqllPVRHRIQVVFQDPnsSLNPRL 379
Cdd:COG4136 20 LSLTVAPGEILTLMGPSGSGKSTllaaiAG-TLSPAFSASGEVLLNGRRLTALP-----AEQRRIGILFQDD--LLFPHL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRvhqPTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:COG4136 92 SVGENLAFALP---PTIGRAQRRARVEQALEEAGLA-GFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAA 167
|
170 180
....*....|....*....|....*.
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHD 485
Cdd:COG4136 168 LRAQFREFVFEQIRQRGIPALLVTHD 193
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
305-503 |
7.27e-33 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 122.74 E-value: 7.27e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQdpnsslnprlnvlq 383
Cdd:cd00267 18 VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKpTSGEILIDGKDIAKLPLEEL---RRRIGYVPQ-------------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iieeglrvhqptlsgaqreqqvkavmmevgldpetrhrypaeFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:cd00267 81 ------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRER 118
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 804913277 464 ILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGE 503
Cdd:cd00267 119 LLELLRELAEEGR-TVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
305-514 |
8.19e-33 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 126.70 E-value: 8.19e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLdTLNRRQLLPVRHRIQVVFQDPNSslnprlnvlQ 383
Cdd:PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKpTSGKIIIDGVDI-TDKKVKLSDIRKKVGLVFQYPEY---------Q 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEE--------GLRvhQPTLSGAQREQQVKAVMMEVGLDPET-RHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:PRK13637 96 LFEEtiekdiafGPI--NLGLSEEEIENRVKRAMNIVGLDYEDyKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 455 SLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVF 514
Cdd:PRK13637 174 GLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
6-257 |
8.64e-33 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 128.34 E-value: 8.64e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESL---LHAS 82
Cdd:COG1118 3 IEVRNISKRFGS----FTLLDDVSLEIASGELVALLGPSGSGKT-TLLRIIAGLETPD----SGRIVLNGRDLftnLPPR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EqtlRGVrgnkiAMIFQEPM------VSLNPLHTLEkqlyevlslHRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQ 156
Cdd:COG1118 74 E---RRV-----GFVFQHYAlfphmtVAENIAFGLR---------VRPPSKAEIRARVEELLELVQLEGLADR---YPSQ 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:COG1118 134 LSGGQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIE 213
|
250 260
....*....|....*....|.
gi 804913277 237 ENQRADTLLSAPTHPYTQKLL 257
Cdd:COG1118 214 QVGTPDEVYDRPATPFVARFL 234
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
305-518 |
9.97e-33 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 125.13 E-value: 9.97e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST--TGLALLRLIRSeGRIVFDGQSLD---TLNRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSllRVLNLLEMPRS-GTLNIAGNHFDfskTPSDKAIRELRRNVGMVFQQYN--LWPHL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQ-IIEEGLRVHQptLSGAQREQQVKAVMMEVGLDPETrHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:PRK11124 98 TVQQnLIEAPCRVLG--LSKDQALARAEKLLERLRLKPYA-DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 459 TVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERvFTAPQ 518
Cdd:PRK11124 175 EITAQIVSIIRELAETG-ITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-FTQPQ 232
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
8-234 |
1.08e-32 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 126.01 E-value: 1.08e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSvgFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTA--LSILrLLPTppavylSGDIRFHGESLLhaSEQT 85
Cdd:TIGR04520 3 VENVS--FSYPESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAklLNGL-LLPT------SGKVTVDGLDTL--DEEN 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGVRgNKIAMIFQepmvslNPlhtlEKQLY------------EVLSLHRG-MRREAARAemigcLDRVGIrqasQRLRD 152
Cdd:TIGR04520 72 LWEIR-KKVGMVFQ------NP----DNQFVgatveddvafglENLGVPREeMRKRVDEA-----LKLVGM----EDFRD 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 153 Y-PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVkKLADSVAVMQ 231
Cdd:TIGR04520 132 RePHLLSGGQKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEA-VLADRVIVMN 210
|
...
gi 804913277 232 HGK 234
Cdd:TIGR04520 211 KGK 213
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
305-508 |
1.47e-32 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 124.47 E-value: 1.47e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLlpVRHRIQVVFQdpNSSLNPRL 379
Cdd:cd03219 19 VSFSVRPGEIHGLIGPNGAGKTT----LFNLIsgflrPTSGSVLFDGEDITGLPPHEI--ARLGIGRTFQ--IPRLFPEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPTLSGAQR--------EQQVKAVMMEVGLDPEtRHRYPAEFSGGQRQRIAVARALILKPSLIILDE 451
Cdd:cd03219 91 TVLENVMVAAQARTGSGLLLARarreereaRERAEELLERVGLADL-ADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 452 PTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03219 170 PAAGLNPEETEELAELIRELRERGI-TVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
305-526 |
1.61e-32 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 124.86 E-value: 1.61e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDT---LNRRQLLPVRHRIQVVFQDPNSSLN 376
Cdd:PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTT----LLRCINlleqpEAGTIRVGDITIDTarsLSQQKGLIRQLRQHVGFVFQNFNLF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLQIIEEGLRVhqptLSGAQREQQV---KAVMMEVGLDPEtRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:PRK11264 98 PHRTVLENIIEGPVI----VKGEPKEEATaraRELLAKVGLAGK-ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 454 SSLDKTVQAQILALLKSLQQKHRLAYIfISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK11264 173 SALDPELVGEVLNTIRQLAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFL 244
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
305-513 |
2.09e-32 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 129.75 E-value: 2.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLLpvRHRIQVVFQDPNssLNPRL 379
Cdd:COG1129 23 VSLELRPGEVHALLGENGAGKST----LMKILsgvyqPDSGEILLDGEPVRFRSPRDAQ--AAGIAIIHQELN--LVPNL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGlrvHQPTLSG----AQREQQVKAVMMEVGL--DPETRHRypaEFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:COG1129 95 SVAENIFLG---REPRRGGlidwRAMRRRARELLARLGLdiDPDTPVG---DLSVAQQQLVEIARALSRDARVLILDEPT 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 454 SSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERV 513
Cdd:COG1129 169 ASLTEREVERLFRIIRRLKAQGV-AIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
8-234 |
2.54e-32 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 121.20 E-value: 2.54e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTLR 87
Cdd:cd00267 2 IENLSFRYGG----RTALDNVSLTLKAGEIVALVGPNGSGKS-TLLRAIAGLLKPT----SGEILIDGKDIAKLPLEELR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 gvrgNKIAMIFQepmvslnplhtlekqlyevlslhrgmrreaaraemigcldrvgirqasqrlrdyphqLSGGERQRVMI 167
Cdd:cd00267 73 ----RRIGYVPQ---------------------------------------------------------LSGGQRQRVAL 91
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 168 AMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
305-521 |
2.58e-32 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 124.46 E-value: 2.58e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLlpVRHRiQVVFQdpNSSLNPRL 379
Cdd:COG4559 20 VSLTLRPGELTAIIGPNGAGKST----LLKLLtgeltPSSGEVRLNGRPLAAWSPWEL--ARRR-AVLPQ--HSSLAFPF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPtlSGAQREQQVKAVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALI-------LKPSLIILDEP 452
Cdd:COG4559 91 TVEEVVALGRAPHGS--SAAQDRQIVREALALVGLAH-LAGRSYQTLSGGEQQRVQLARVLAqlwepvdGGPRWLFLDEP 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 453 TSSLDKTVQAQILALLKSLQQKhRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP--QQAY 521
Cdd:COG4559 168 TSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDEllERVY 237
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
6-234 |
2.62e-32 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 121.72 E-value: 2.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSvgFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASEQ 84
Cdd:cd03228 1 IEFKNVS--FSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYdPT------SGEILIDGVDLRDLDLE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRgvrgNKIAMIFQEPMV---SLnplhtlekqlyevlslhrgmrreaarAEMIgcldrvgirqasqrlrdyphqLSGGE 161
Cdd:cd03228 73 SLR----KNIAYVPQDPFLfsgTI--------------------------RENI---------------------LSGGQ 101
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGK 234
Cdd:cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
23-257 |
2.68e-32 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 124.05 E-value: 2.68e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTppavYLSGDIRFHGESLL--HASEQTLRGVRGnkiaMIFQE 100
Cdd:PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKS-TLLRCINKLEE----ITSGDLIVDGLKVNdpKVDERLIRQEAG----MVFQQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 101 pmVSLNP-LHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQRVMIAMALLTRPELLI 179
Cdd:PRK09493 86 --FYLFPhLTALENVMFGPLRV-RGASKEEAEKQARELLAKVGL---AERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQKLL 257
Cdd:PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFL 236
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-233 |
3.06e-32 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 123.31 E-value: 3.06e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTsPLLAIENLSVGFR--QQQHVR-PVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLPtppAVYL--SGDIRFHG 75
Cdd:COG4778 1 MT-TLLEVENLSKTFTlhLQGGKRlPVLDGVSFSVAAGECVALTGPSGAGKS----TLLKCIY---GNYLpdSGSILVRH 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 ES----LLHASEQTLRGVRGNKIAMIFQ----EPMVSlnplhTLEkQLYEVLsLHRGMRREAARAEMIGCLDRVGIRQas 147
Cdd:COG4778 73 DGgwvdLAQASPREILALRRRTIGYVSQflrvIPRVS-----ALD-VVAEPL-LERGVDREEARARARELLARLNLPE-- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 148 qRLRD-YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADS 226
Cdd:COG4778 144 -RLWDlPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKAR-GTAIIGIFHDEEVREAVADR 221
|
....*..
gi 804913277 227 VAVMQHG 233
Cdd:COG4778 222 VVDVTPF 228
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
305-517 |
3.62e-32 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 126.77 E-value: 3.62e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSL-DTLNRRQLLPVRHRIQVVFQDpnSSLNPR 378
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTT----LIRLIAgltrpDEGEIVLNGRTLfDSRKGIFLPPEKRRIGYVFQE--ARLFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQPtlsgAQREQQVKAVMMEVGLDPETRhRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:TIGR02142 90 LSVRGNLRYGMKRARP----SERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:TIGR02142 165 PRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
28-248 |
6.84e-32 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 125.98 E-value: 6.84e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvtalSILRL---LPTPPavylSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPmvS 104
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKT----TLLRAiagLERPD----SGRIRLGGEVLQDSARGIFLPPHRRRIGYVFQEA--R 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 105 LNPlHtlekqlYEVLS-LHRGMRReAARAEMIGCLDRV----GIrqaSQRLRDYPHQLSGGERQRVMIAMALLTRPELLI 179
Cdd:COG4148 88 LFP-H------LSVRGnLLYGRKR-APRAERRISFDEVvellGI---GHLLDRRPATLSGGERQRVAIGRALLSSPRLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAP 248
Cdd:COG4148 157 MDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRP 225
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
305-519 |
7.42e-32 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 123.97 E-value: 7.42e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQsldTLNRRQLLPVRHRIQVVFQDPNSSLnprlnVLQ 383
Cdd:PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEaGTITVGGM---VLSEETVWDVRRQVGMVFQNPDNQF-----VGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEE----GLRVHqptlsGAQREQQVKAV---MMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:PRK13635 98 TVQDdvafGLENI-----GVPREEMVERVdqaLRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 457 DKTVQAQILALLKSLQQKHRLAYIFISHDLHVVrALCHQVIVLRQGEVVEQGQCERVFTAPQQ 519
Cdd:PRK13635 172 DPRGRREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEIFKSGHM 233
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
305-505 |
9.34e-32 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 119.84 E-value: 9.34e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLLpvRHRIQVVFQdpnsslnprl 379
Cdd:cd03216 19 VSLSVRRGEVHALLGENGAGKST----LMKILsglykPDSGEILVDGKEVSFASPRDAR--RAGIAMVYQ---------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 nvlqiieeglrvhqptlsgaqreqqvkavmmevgldpetrhrypaeFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03216 83 ----------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPA 116
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 804913277 460 VQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:cd03216 117 EVERLFKVIRRLRAQG-VAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
305-508 |
1.18e-31 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 121.95 E-value: 1.18e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-R----SEGRIVFDGQSLDTLnrrQLLPVRHRIQVVFQDpnsslnprl 379
Cdd:cd03253 20 VSFTIPAGKKVAIVGPSGSGKST----ILRLLfRfydvSSGSILIDGQDIREV---TLDSLRRAIGVVPQD--------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVL--QIIEEGLRVHQPTLSGAQREQQVKAVM-------MEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILD 450
Cdd:cd03253 84 TVLfnDTIGYNIRYGRPDATDEEVIEAAKAAQihdkimrFPDGYDTIVGER-GLKLSGGEKQRVAIARAILKNPPILLLD 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 451 EPTSSLDKTVQAQILALLKSLqQKHRLAyIFISHDLHVVrALCHQVIVLRQGEVVEQG 508
Cdd:cd03253 163 EATSALDTHTEREIQAALRDV-SKGRTT-IVIAHRLSTI-VNADKIIVLKDGRIVERG 217
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
305-504 |
1.47e-31 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 120.98 E-value: 1.47e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDpnSSLNPRLNVLQ 383
Cdd:cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELpTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQD--FRLLPDRNVYE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQptLSGAQREQQVKAVMMEVGLdpETRHR-YPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQA 462
Cdd:cd03292 98 NVAFALEVTG--VPPREIRKRVPAALELVGL--SHKHRaLPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 804913277 463 QILALLKSLQQkhRLAYIFIS-HDLHVVRALCHQVIVLRQGEV 504
Cdd:cd03292 174 EIMNLLKKINK--AGTTVVVAtHAKELVDTTRHRVIALERGKL 214
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-247 |
1.84e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 127.95 E-value: 1.84e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtpPAvylSGDIRFHGESLLHA 81
Cdd:COG4988 333 GPPSIELEDVSFSYPGG---RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLP--PY---SGSILINGVDLSDL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRgvrgNKIAMIFQEPmvslnplHTLEKQLYEVLSLHRgmrREAARAEMIGCLDRVGIRQASQRLR---DYP---- 154
Cdd:COG4988 405 DPASWR----RQIAWVPQNP-------YLFAGTIRENLRLGR---PDASDEELEAALEAAGLDEFVAALPdglDTPlgeg 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 155 -HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNmgLLFITHNLSIVkKLADSVAVMQHG 233
Cdd:COG4988 471 gRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRT--VILITHRLALL-AQADRILVLDDG 547
|
250
....*....|....
gi 804913277 234 KCVENQRADTLLSA 247
Cdd:COG4988 548 RIVEQGTHEELLAK 561
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
305-508 |
1.97e-31 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 121.06 E-value: 1.97e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLI-RSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSLnpRLN 380
Cdd:cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVeLSSGSILIDGVDISKIGLHDL---RSRISIIPQDPvlfSGTI--RSN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 V--LQIIEEGlRVHQpTLSGAQREQQVKAvmMEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:cd03244 98 LdpFGEYSDE-ELWQ-ALERVGLKEFVES--LPGGLDTVVEEG-GENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 804913277 459 TVQAQILALLKSlQQKHRlAYIFISHDLHVVrALCHQVIVLRQGEVVEQG 508
Cdd:cd03244 173 ETDALIQKTIRE-AFKDC-TVLTIAHRLDTI-IDSDRILVLDKGRVVEFD 219
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
305-527 |
3.51e-31 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 121.61 E-value: 3.51e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQ----------SLDTLNRRQLLPVRHRIQVVFQ 369
Cdd:PRK10619 24 VSLQANAGDVISIIGSSGSGKST----FLRCINflekpSEGSIVVNGQtinlvrdkdgQLKVADKNQLRLLRTRLTMVFQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 370 DPNssLNPRLNVLQIIEEGlRVHQPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIIL 449
Cdd:PRK10619 100 HFN--LWSHMTVLENVMEA-PIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 450 DEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:PRK10619 177 DEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLK 253
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-246 |
2.21e-30 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 118.81 E-value: 2.21e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGESLLHAS 82
Cdd:COG4555 1 MIEVENLSKKYGK----VPALKDVSFTAKDGEITGLLGPNGAGKT-TLLRMLagLLKPD------SGSILIDGEDVRKEP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRgvrgnKIAMIFQEPMVSLNplHTLEKQLYEVLSLHRGMRREA-ARAEMIgcLDRVGIRQ-ASQRLRDyphqLSGG 160
Cdd:COG4555 70 REARR-----QIGVLPDERGLYDR--LTVRENIRYFAELYGLFDEELkKRIEEL--IELLGLEEfLDRRVGE----LSTG 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQR 240
Cdd:COG4555 137 MKKKVALARALVHDPKVLLLDEPTNGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGS 215
|
....*.
gi 804913277 241 ADTLLS 246
Cdd:COG4555 216 LDELRE 221
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
305-526 |
3.26e-30 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 118.72 E-value: 3.26e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLlpVRHRiQVVFQdpNSSLNPRL 379
Cdd:PRK13548 21 VSLTLRPGEVVAILGPNGAGKST----LLRALSgelspDSGEVRLNGRPLADWSPAEL--ARRR-AVLPQ--HSSLSFPF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHqpTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALI------LKPSLIILDEPT 453
Cdd:PRK13548 92 TVEEVVAMGRAPH--GLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPT 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 454 SSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGqcervftAPQQAYTRQLL 526
Cdd:PRK13548 169 SALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG-------TPAEVLTPETL 234
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
305-505 |
4.68e-30 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 116.59 E-value: 4.68e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQllpvrhRIQVVFQDPNSSLnprlnVLQ 383
Cdd:cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKeSSGSILLNGKPIKAKERRK------SIGYVMQDVDYQL-----FTD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQPTLSGAQreQQVKAVMMEVGL-DPETRHryPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQA 462
Cdd:cd03226 88 SVREELLLGLKELDAGN--EQAETVLKDLDLyALKERH--PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 804913277 463 QILALLKSLQ-QKHrlAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:cd03226 164 RVGELIRELAaQGK--AVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
305-528 |
5.83e-30 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 117.59 E-value: 5.83e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRqllpvRHRIQVVFQdpNSSLNPRL 379
Cdd:TIGR00968 19 VNLEVPTGSLVALLGPSGSGKST----LLRIIagleqPDSGRIRLNGQDATRVHAR-----DRKIGFVFQ--HYALFKHL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPTlsGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:TIGR00968 88 TVRDNIAFGLEIRKHP--KAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLAL 528
Cdd:TIGR00968 165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGE 233
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
305-526 |
5.98e-30 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 117.44 E-value: 5.98e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLnrrqllPVRHR-IQVVFQdpNSSLNPR 378
Cdd:cd03296 21 VSLDIPSGELVALLGPSGSGKTT----LLRLIAglerpDSGTILFGGEDATDV------PVQERnVGFVFQ--HYALFRH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVH--QPTLSGAQREQQVKAVMMEVGLDPETRhRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:cd03296 89 MTVFDNVAFGLRVKprSERPPEAEIRAKVHELLKLVQLDWLAD-RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 457 DKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:cd03296 168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFL 237
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
305-526 |
1.04e-29 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 116.73 E-value: 1.04e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTlNRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:PRK09493 20 IDLNIDQGEVVVIIGPSGSGKST----LLRCINkleeiTSGDLIVDGLKVND-PKVDERLIRQEAGMVFQQFY--LFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGlRVHQPTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:PRK09493 93 TALENVMFG-PLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 460 VQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK09493 171 LRHEVLKVMQDLAEEG-MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFL 236
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
25-236 |
1.25e-29 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 115.93 E-value: 1.25e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 25 VNAISLQVNAGETLALVGESGSGKSvTALSILRLLpTPPAvylSGDIRFHGESLLHASeqtlRGVRgNKIAMIFQEPmvs 104
Cdd:cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKT-TTIKMLTTL-LKPT---SGRATVAGHDVVREP----REVR-RRIGIVFQDL--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 105 lnplhTLEKQL--YEVLSLH---RGMRREAARAEMIGCLDRVGIRQASQRLRDYphqLSGGERQRVMIAMALLTRPELLI 179
Cdd:cd03265 83 -----SVDDELtgWENLYIHarlYGVPGAERRERIDELLDFVGLLEAADRLVKT---YSGGMRRRLEIARSLVHRPEVLF 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
317-521 |
1.50e-29 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 118.75 E-value: 1.50e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 317 LVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDtlnrrQLLPVRHRIQVVFQdpNSSLNPRLNVLQIIEEGLRV 391
Cdd:TIGR01187 1 LLGPSGCGKTT----LLRLLAgfeqpDSGSIMLDGEDVT-----NVPPHLRHINMVFQ--SYALFPHMTVEENVAFGLKM 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 392 HQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471
Cdd:TIGR01187 70 RK--VPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 804913277 472 QQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAY 521
Cdd:TIGR01187 147 QEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
305-508 |
2.10e-29 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 115.40 E-value: 2.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSlnprln 380
Cdd:cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDpQKGQILIDGIDIRDISRKSL---RSMIGVVLQDTflfSGT------ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 vlqiIEEGLRVHQPTlsgaQREQQVKAVMMEVGLDPETRHR------YPAE----FSGGQRQRIAVARALILKPSLIILD 450
Cdd:cd03254 93 ----IMENIRLGRPN----ATDEEVIEAAKEAGAHDFIMKLpngydtVLGEnggnLSQGERQLLAIARAMLRDPKILILD 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 451 EPTSSLDKTVQAQILALLKSLqQKHRLAYIfISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:cd03254 165 EATSNIDTETEKLIQEALEKL-MKGRTSII-IAHRLSTIKN-ADKILVLDDGKIIEEG 219
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
305-496 |
2.75e-29 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 115.30 E-value: 2.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLLPVRHRiQVVFQDPNSSLNPRL 379
Cdd:PRK11629 28 VSFSIGEGEMMAIVGSSGSGKST----LLHLLggldtPTSGDVIFNGQPMSKLSSAAKAELRNQ-KLGFIYQFHHLLPDF 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQiieeglRVHQPTLSGAQREQQVKAVMME----VGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:PRK11629 103 TALE------NVAMPLLIGKKKPAEINSRALEmlaaVGLEHRANHR-PSELSGGERQRVAIARALVNNPRLVLADEPTGN 175
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 456 LDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQV 496
Cdd:PRK11629 176 LDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-236 |
3.86e-29 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 114.84 E-value: 3.86e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSV---GFRqqqhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGESLLH 80
Cdd:cd03219 1 LEVRGLTKrfgGLV-------ALDDVSFSVRPGEIHGLIGPNGAGKT-TLFNLIsgFLRPT------SGSVLFDGEDITG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 --ASEQTLRGV-RGNKIAMIFQEPMVSLN---PLHTLEKQLYEVLSLHRGMRREAARAEMIgcLDRVGIrqasQRLRDYP 154
Cdd:cd03219 67 lpPHEIARLGIgRTFQIPRLFPELTVLENvmvAAQARTGSGLLLARARREEREARERAEEL--LERVGL----ADLADRP 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 155 -HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHG 233
Cdd:cd03219 141 aGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQG 219
|
...
gi 804913277 234 KCV 236
Cdd:cd03219 220 RVI 222
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
22-237 |
3.95e-29 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 121.04 E-value: 3.95e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKS-VTALsILRLL-PTppavylSGDIRFHGESLLHASEQTLRgvrgNKIAMIFQ 99
Cdd:COG1132 353 RPVLKDISLTIPPGETVALVGPSGSGKStLVNL-LLRFYdPT------SGRILIDGVDIRDLTLESLR----RQIGVVPQ 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 100 EPMVslnplhtLEKQLYEVLSLhrGmRREAARAEMIGCLDRVgirQASQRLRDYPHQ-----------LSGGERQRVMIA 168
Cdd:COG1132 422 DTFL-------FSGTIRENIRY--G-RPDATDEEVEEAAKAA---QAHEFIEALPDGydtvvgergvnLSGGQRQRIAIA 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 169 MALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVE 237
Cdd:COG1132 489 RALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAHRLSTIRN-ADRILVLDDGRIVE 554
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
6-237 |
4.21e-29 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 115.13 E-value: 4.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpvVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLlhaseqT 85
Cdd:cd03299 1 LKVENLSKDWKEFK-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-----SGKILLNGKDI------T 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGVRGNKIAMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----AEMIG---CLDRvgirqasqrlrdYPHQL 157
Cdd:cd03299 65 NLPPEKRDISYVPQN--YALFPHMTVYKNIAYGLKKRKVDKKEIERkvleiAEMLGidhLLNR------------KPETL 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:cd03299 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
305-501 |
1.11e-28 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 112.96 E-value: 1.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLnrrqllPVRHRIQVVFQDPNSSLNPRL 379
Cdd:COG4133 21 LSFTLAAGEALALTGPNGSGKTT----LLRILagllpPSAGEVLWNGEPIRDA------REDYRRRLAYLGHADGLKPEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLqiieEGLRVHQPTLSGAQREQQVKAVMMEVGLDPEtRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:COG4133 91 TVR----ENLRFWAALYGLRADREAIDEALEAVGLAGL-ADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFTALDAA 165
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 804913277 460 VQAQILALLKSLQQKHRLAyIFISHDLhvVRALCHQVIVLRQ 501
Cdd:COG4133 166 GVALLAELIAAHLARGGAV-LLTTHQP--LELAAARVLDLGD 204
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
305-502 |
1.26e-28 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 113.30 E-value: 1.26e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVF--DGQSLD--TLNRRQLLPVR-HRIQVVFQdpnsS 374
Cdd:COG4778 30 VSFSVAAGECVALTGPSGAGKST----LLKCIYgnylpDSGSILVrhDGGWVDlaQASPREILALRrRTIGYVSQ----F 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 375 LN--PRLNVLQIIEEGLRVHqptlsGAQREQ---QVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIIL 449
Cdd:COG4778 102 LRviPRVSALDVVAEPLLER-----GVDREEaraRARELLARLNLPERLWDLPPATFSGGEQQRVNIARGFIADPPLLLL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 804913277 450 DEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQG 502
Cdd:COG4778 177 DEPTASLDAANRAVVVELIEEAKARGT-AIIGIFHDEEVREAVADRVVDVTPF 228
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
305-518 |
1.64e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 114.51 E-value: 1.64e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST-----TGLaLLRLIRSEGRIVFDGQsldTLNRRQLLPVRHRIQVVFQDPNSSLnprl 379
Cdd:PRK13640 26 ISFSIPRGSWTALIGHNGSGKSTiskliNGL-LLPDDNPNSKITVDGI---TLTAKTVWDIREKVGIVFQNPDNQF---- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 nVLQIIEE----GLRVHQptLSGAQREQQVKAVMMEVGL----DPEtrhryPAEFSGGQRQRIAVARALILKPSLIILDE 451
Cdd:PRK13640 98 -VGATVGDdvafGLENRA--VPRPEMIKIVRDVLADVGMldyiDSE-----PANLSGGQKQRVAIAGILAVEPKIIILDE 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 452 PTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVrALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:PRK13640 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVE 235
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
306-508 |
1.90e-28 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 113.02 E-value: 1.90e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSlnprlnv 381
Cdd:cd03249 23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDpTSGEILLDGVDIRDLNLRWL---RSQIGLVSQEPvlfDGT------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 382 lqiIEEGLRVHQPTLSGAQREQQVKA-------VMMEVGLDPETRHRYpAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:cd03249 93 ---IAENIRYGKPDATDEEVEEAAKKanihdfiMSLPDGYDTLVGERG-SQLSGGQKQRIAIARALLRNPKILLLDEATS 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 455 SLD----KTVQAQILALLKSlqqkhRLAyIFISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:cd03249 169 ALDaeseKLVQEALDRAMKG-----RTT-IVIAHRLSTIRN-ADLIAVLQNGQVVEQG 219
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
256-508 |
1.97e-28 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 119.83 E-value: 1.97e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 256 LLNSEPTgdpVPLPAGQAP-----LLEVDKLRVAFPIR--KGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTT 328
Cdd:TIGR00958 457 YLDRKPN---IPLTGTLAPlnlegLIEFQDVSFSYPNRpdVPVLK----------GLTFTLHPGEVVALVGPSGSGKSTV 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 329 GLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvrHR-IQVVFQDPnssLNPRLNVLQIIEEGLRVHQptlsgaqrEQQVK 406
Cdd:TIGR00958 524 AALLQNLYQpTGGQVLLDGVPLVQYDHHYL----HRqVALVGQEP---VLFSGSVRENIAYGLTDTP--------DEEIM 588
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 407 AVMMEVGLDP---ETRHRYPAE-------FSGGQRQRIAVARALILKPSLIILDEPTSSLDktvqAQILALLKSLQQKHR 476
Cdd:TIGR00958 589 AAAKAANAHDfimEFPNGYDTEvgekgsqLSGGQKQRIAIARALVRKPRVLILDEATSALD----AECEQLLQESRSRAS 664
|
250 260 270
....*....|....*....|....*....|..
gi 804913277 477 LAYIFISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:TIGR00958 665 RTVLLIAHRLSTVER-ADQILVLKKGSVVEMG 695
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
305-508 |
2.42e-28 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 112.46 E-value: 2.42e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGqsLDTLnrRQLLPVRHRIQVVFQdpNSSLNPRLNVLQ 383
Cdd:cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEpDAGFATVDG--FDVV--KEPAEARRRLGFVSD--STGLYDRLTARE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHqpTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:cd03266 98 NLEYFAGLY--GLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 804913277 464 ILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03266 175 LREFIRQLRALGK-CILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
28-252 |
2.73e-28 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 115.59 E-value: 2.73e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEpmVSLNP 107
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKT-TLIRLIAGLTRPDE----GEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE--ARLFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 108 LHTLEKQLYEVLSLHRGMRREAARAEMIGCLdrvGIrqaSQRLRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187
Cdd:TIGR02142 89 HLSVRGNLRYGMKRARPSERRISFERVIELL---GI---GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 188 DVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPY 252
Cdd:TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
317-524 |
2.95e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 113.08 E-value: 2.95e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 317 LVGESGSGKSTTGLALLRLI------RSEGRIVFDGQSLDTLNrrqLLPVRHRIQVVFQDPNSSlnPRLNVLQIIEEGLR 390
Cdd:PRK14247 34 LMGPSGSGKSTLLRVFNRLIelypeaRVSGEVYLDGQDIFKMD---VIELRRRVQMVFQIPNPI--PNLSIFENVALGLK 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 391 VHQPTLSGAQREQQVKAVMMEVGLDPETRHRYPA---EFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILAL 467
Cdd:PRK14247 109 LNRLVKSKKELQERVRWALEKAQLWDEVKDRLDApagKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 468 LksLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQ 524
Cdd:PRK14247 189 F--LELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELTEK 243
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
305-514 |
3.00e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 113.79 E-value: 3.00e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDtLNRRQLLPVRHRIQVVFQDPNSSLNPRlNVLQ 383
Cdd:PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQNLNGILKpSSGRILFDGKPID-YSRKGLMKLRESVGMVFQDPDNQLFSA-SVYQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGlrVHQPTLSGAQREQQVKAVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:PRK13636 103 DVSFG--AVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 804913277 464 ILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVF 514
Cdd:PRK13636 180 IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-254 |
3.13e-28 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 113.21 E-value: 3.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSIL-RLLPTPPAVYLSGDIRFHGESLLH 80
Cdd:COG1117 8 LEPKIEVRNLNVYYGDKQ----ALKDINLDIPENKVTALIGPSGCGKS-TLLRCLnRMNDLIPGARVEGEILLDGEDIYD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQ--TLRgvRgnKIAMIFQEPmvslNPLhtlEKQLYE-V---LSLHrGMRREAARAEMI-GCLdrvgiRQASQ----- 148
Cdd:COG1117 83 PDVDvvELR--R--RVGMVFQKP----NPF---PKSIYDnVaygLRLH-GIKSKSELDEIVeESL-----RKAALwdevk 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 149 -RLRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALD-VSVqAQILSLLRELQRELNMglLFITHNLSIVKKLADS 226
Cdd:COG1117 146 dRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDpIST-AKIEELILELKKDYTI--VIVTHNMQQAARVSDY 222
|
250 260
....*....|....*....|....*...
gi 804913277 227 VAVMQHGKCVENQRADTLLSAPTHPYTQ 254
Cdd:COG1117 223 TAFFYLGELVEFGPTEQIFTNPKDKRTE 250
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-246 |
3.61e-28 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 111.76 E-value: 3.61e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLLH-ASEQ 84
Cdd:cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-----RSGSIRFDGRDITGlPPHE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRgvRGnkIAMIFQEPMVSlnPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGirqasQRLRDYPHQLSGGERQR 164
Cdd:cd03224 72 RAR--AG--IGYVPEGRRIF--PELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-----ERRKQLAGTLSGGEQQM 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTL 244
Cdd:cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
..
gi 804913277 245 LS 246
Cdd:cd03224 220 LA 221
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
305-514 |
3.84e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 113.31 E-value: 3.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtgLALLRL---IRSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPNSSLnprlnV 381
Cdd:PRK13648 28 VSFNIPKGQWTSIVGHNGSGKST--IAKLMIgieKVKSGEIFYNNQAITDDNFEKL---RKHIGIVFQNPDNQF-----V 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 382 LQIIEE----GLRVHQPTLSGAQREqqVKAVMMEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK13648 98 GSIVKYdvafGLENHAVPYDEMHRR--VSEALKQVDMLERADYE-PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYIFISHDLhvVRAL-CHQVIVLRQGEVVEQGQCERVF 514
Cdd:PRK13648 175 PDARQNLLDLVRKVKSEHNITIISITHDL--SEAMeADHVIVMNKGTVYKEGTPTEIF 230
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
305-504 |
6.24e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 112.90 E-value: 6.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQSLDTLNrrqLLPVRHRIQVVFQDPNSSLnprlnVLQ 383
Cdd:PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAEsGQIIIDGDLLTEEN---VWDIRHKIGMVFQNPDNQF-----VGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEE----GLRvhQPTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:PRK13650 98 TVEDdvafGLE--NKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVrALCHQVIVLRQGEV 504
Cdd:PRK13650 175 GRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQV 218
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-223 |
7.80e-28 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 111.45 E-value: 7.80e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLH 80
Cdd:PRK11629 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKS-TLLHLLGGLDTPT----SGDVIFNGQPMSK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRGVRGNKIAMIFQ--EPMVSLNPLHTLEKQLyevlsLHRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLS 158
Cdd:PRK11629 76 LSSAAKAELRNQKLGFIYQfhHLLPDFTALENVAMPL-----LIGKKKPAEINSRALEMLAAVGLEHRANH---RPSELS 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKL 223
Cdd:PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-506 |
7.98e-28 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 116.81 E-value: 7.98e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFrqqqhvrPVVNA---ISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGES 77
Cdd:PRK09700 1 MATPYISMAGIGKSF-------GPVHAlksVNLTVYPGEIHALLGENGAGKS-TLMKVLSGIHEPT----KGTITINNIN 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 78 ---LLHASEQTLrgvrgnKIAMIFQEPMVsLNPLHTLEkQLY-------EVLSL----HRGMRReaaRAEMIgcLDRVGI 143
Cdd:PRK09700 69 ynkLDHKLAAQL------GIGIIYQELSV-IDELTVLE-NLYigrhltkKVCGVniidWREMRV---RAAMM--LLRVGL 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 144 RQAsqrLRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKL 223
Cdd:PRK09700 136 KVD---LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRI 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 224 ADSVAVMQHG--------KCVENQRADTLLSApthpytQKLLNSEPTGDPVPLPAGQAPLLEVDKLrvafpIRKGILKrv 295
Cdd:PRK09700 212 CDRYTVMKDGssvcsgmvSDVSNDDIVRLMVG------RELQNRFNAMKENVSNLAHETVFEVRNV-----TSRDRKK-- 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 296 vdhnvvVNNISFTLHPGETLGLVGESGSGKSTTGLALLRL-IRSEGRIVFDGQSLDTlnRRQLLPVRHRIQVVFQD---- 370
Cdd:PRK09700 279 ------VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVdKRAGGEIRLNGKDISP--RSPLDAVKKGMAYITESrrdn 350
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 371 ---PNSSLNPRLNVLQIIEEG----------LRVHQPTLSGAQREQQVKAVMMEVGLdpetrhrypAEFSGGQRQRIAVA 437
Cdd:PRK09700 351 gffPNFSIAQNMAISRSLKDGgykgamglfhEVDEQRTAENQRELLALKCHSVNQNI---------TELSGGNQQKVLIS 421
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 438 RALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVE 506
Cdd:PRK09700 422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK-VILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-254 |
8.42e-28 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 111.79 E-value: 8.42e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLH 80
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQT--LRgvrgNKIAMIFQEPmvslNPLhtlEKQLYEvlSLHRGMRREAARAEMIgcLDRV---GIRQAS------QR 149
Cdd:PRK14239 77 PRTDTvdLR----KEIGMVFQQP----NPF---PMSIYE--NVVYGLRLKGIKDKQV--LDEAvekSLKGASiwdevkDR 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 150 LRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMglLFITHNLSIVKKLADSVAV 229
Cdd:PRK14239 142 LHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTM--LLVTRSMQQASRISDRTGF 219
|
250 260
....*....|....*....|....*
gi 804913277 230 MQHGKCVENQRADTLLSAPTHPYTQ 254
Cdd:PRK14239 220 FLDGDLIEYNDTKQMFMNPKHKETE 244
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
5-216 |
1.15e-27 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 110.64 E-value: 1.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQ 84
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKS-TLLAILAGLDDGS----SGEVSLVGQPLHQMDEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRGNKIAMIFQEPMVsLNPLHTLEKqlYEVLSLHRGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQR 164
Cdd:PRK10584 81 ARAKLRAKHVGFVFQSFML-IPTLNALEN--VELPALLRGESSRQSRNGAKALLEQLGL---GKRLDHLPAQLSGGEQQR 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHN 216
Cdd:PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
6-234 |
1.15e-27 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 110.79 E-value: 1.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHaseqt 85
Cdd:cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKT-TLLRLIAGFETPT----SGEILLDGKDITN----- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 lrgVRGNK--IAMIFQEpmVSLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQ 163
Cdd:cd03300 67 ---LPPHKrpVNTVFQN--YALFPHLTVFENIAFGLRL-KKLPKAEIKERVAEALDLVQLEGYANR---KPSQLSGGQQQ 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGK 208
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
306-526 |
1.24e-27 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 114.75 E-value: 1.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLLPVRHR-IQVVFQdpNSSLNPRLNVLQ 383
Cdd:PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEpTRGQVLIDGVDIAKISDAELREVRRKkIAMVFQ--SFALMPHMTVLD 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVhqPTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:PRK10070 126 NTAFGMEL--AGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 464 ILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF 265
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
6-234 |
1.81e-27 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 113.25 E-value: 1.81e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTppavYLSGDIRFHGE--SLLHAse 83
Cdd:PRK10851 3 IEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKT-TLLRIIAGLEH----QTSGHIRFHGTdvSRLHA-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 qtlrgvRGNKIAMIFQE------PMVSLNPLHTLEkqlyeVLSLHRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQL 157
Cdd:PRK10851 72 ------RDRKVGFVFQHyalfrhMTVFDNIAFGLT-----VLPRRERPNAAAIKAKVTQLLEMVQLAHLADR---YPAQL 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGN 214
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
305-508 |
1.98e-27 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 109.90 E-value: 1.98e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTgLALLR-LIR-SEGRIVFDGQSLDTlNRRQllpVRHRIQVVFQDpnSSLNPRLNVL 382
Cdd:cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTT-LKMLTgELRpTSGTAYINGYSIRT-DRKA---ARQSLGYCPQF--DALFDELTVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 383 QIIEEGLRVHqpTLSGAQREQQVKAVMMEVGLDPEtRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQA 462
Cdd:cd03263 94 EHLRFYARLK--GLPKSEIKEEVELLLRVLGLTDK-ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 804913277 463 QILALLKSLQQKHrlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03263 171 AIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
305-508 |
2.05e-27 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 116.21 E-value: 2.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTgLALLRLIR--SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSlnprl 379
Cdd:PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTL-INLLQRVFdpQSGRILIDGTDIRTVTRASL---RRNIAVVFQDAglfNRS----- 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 nvlqiIEEGLRVHQPTLSGAQ-REQQVKAVMMEV------GLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:PRK13657 425 -----IEDNIRVGRPDATDEEmRAAAERAQAHDFierkpdGYDTVVGER-GRQLSGGERQRLAIARALLKDPPILILDEA 498
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 453 TSSLDKTVQAQILALLKSLqQKHRLAYIfISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:PRK13657 499 TSALDVETEAKVKAALDEL-MKGRTTFI-IAHRLSTVRN-ADRILVFDNGRVVESG 551
|
|
| tungstate_WtpC |
NF040840 |
tungstate ABC transporter ATP-binding protein WtpC; |
5-289 |
2.59e-27 |
|
tungstate ABC transporter ATP-binding protein WtpC;
Pssm-ID: 468779 [Multi-domain] Cd Length: 347 Bit Score: 112.86 E-value: 2.59e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQhvrpvVNAISLQVNAGETLALVGESGSGKSVTaLSILRLLPTPPavylSGDIRFHGESL-LHASE 83
Cdd:NF040840 1 MIRIENLSKDWKEFK-----LRDISLEVKEGEYFIILGPSGAGKTVL-LELIAGIWPPD----SGKIYLDGKDItNLPPE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QtlrgvRGnkIAMIFQEPMvsLNPLHTLEKQLYEVLSLHRGMRREAARA--EMIGCLdrvGIRQASQRlrdYPHQLSGGE 161
Cdd:NF040840 71 K-----RG--IAYVYQNYM--LFPHKTVFENIAFGLKLRKVPKEEIERKvkEIMELL---GISHLLHR---KPRTLSGGE 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRA 241
Cdd:NF040840 136 QQRVALARALIIEPKLLLLDEPLSALDVQTRDELIREMKRWHREFGFTAIHVTHNFEEALSLADRVGIMLNGRLSQVGDV 215
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 804913277 242 DTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAPLLEVDKLRVAFPIRK 289
Cdd:NF040840 216 REVFRRPKNEFVARFVGFENIIEGVAEKGGEGTILDTGNIKIELPEEK 263
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
305-523 |
3.63e-27 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 110.13 E-value: 3.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLR-------LI---RSEGRIVFDGQslDTLNRRQ-LLPVRHRIQVVFQDPN- 372
Cdd:COG1117 30 INLDIPENKVTALIGPSGCGKST----LLRclnrmndLIpgaRVEGEILLDGE--DIYDPDVdVVELRRRVGMVFQKPNp 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 373 --SSlnprlnvlqiIEE----GLRVHQpTLSGAQREQQVKAVMMEVGLDPETRHR---YPAEFSGGQRQRIAVARALILK 443
Cdd:COG1117 104 fpKS----------IYDnvayGLRLHG-IKSKSELDEIVEESLRKAALWDEVKDRlkkSALGLSGGQQQRLCIARALAVE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 444 PSLIILDEPTSSLDKTVQAQILALLKSLqqKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTR 523
Cdd:COG1117 173 PEVLLMDEPTSALDPISTAKIEELILEL--KKDYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTEQIFTNPKDKRTE 250
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
24-258 |
3.63e-27 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 110.06 E-value: 3.63e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 24 VVNAISLQVNAGETLALVGESGSGKSvTALSILRLL--PTPPAVYLSGD----IRFHGESLLHASEQTLRGVRgNKIAMI 97
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKS-TFLRCINFLekPSEGSIVVNGQtinlVRDKDGQLKVADKNQLRLLR-TRLTMV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 98 FQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRlrDYPHQLSGGERQRVMIAMALLTRPEL 177
Cdd:PRK10619 98 FQH--FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQG--KYPVHLSGGQQQRVSIARALAMEPEV 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 178 LIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQKLL 257
Cdd:PRK10619 174 LLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFL 252
|
.
gi 804913277 258 N 258
Cdd:PRK10619 253 K 253
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
275-518 |
3.94e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 110.55 E-value: 3.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 275 LLEVDKLRVAFPIRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDtLN 353
Cdd:PRK13639 1 ILETRDLKYSYPDGTEALKG----------INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKpTSGEVLIKGEPIK-YD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 354 RRQLLPVRHRIQVVFQDPNSSL-NPRlnVLQIIEEGlrvhqPT---LSGAQREQQVKAVMMEVGLDPETRhRYPAEFSGG 429
Cdd:PRK13639 70 KKSLLEVRKTVGIVFQNPDDQLfAPT--VEEDVAFG-----PLnlgLSKEEVEKRVKEALKAVGMEGFEN-KPPHHLSGG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 430 QRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLqQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQ 509
Cdd:PRK13639 142 QKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
....*....
gi 804913277 510 CERVFTAPQ 518
Cdd:PRK13639 221 PKEVFSDIE 229
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
305-518 |
4.01e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 110.57 E-value: 4.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRS-EGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPNSSLnprlnVLQ 383
Cdd:PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEfEGKVKIDGELLTAENVWNL---RRKIGMVFQNPDNQF-----VGA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQPTlSGAQREQQVKAV---MMEVG-LDPETRHryPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:PRK13642 98 TVEDDVAFGMEN-QGIPREEMIKRVdeaLLAVNmLDFKTRE--PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVrALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:PRK13642 175 GRQEIMRVIHEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSELFATSE 232
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
23-252 |
4.38e-27 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 109.35 E-value: 4.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGEsllhasEQTLRGVRGNKIAMIFQEpm 102
Cdd:cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKT-TLLRLIAGLERPD----SGTILFGGE------DATDVPVQERNVGFVFQH-- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 103 VSLNPLHTLEKQLYEVLSLHRGMRREAA---RAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQRVMIAMALLTRPELLI 179
Cdd:cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEaeiRAKVHELLKLVQLDWLADR---YPAQLSGGQRQRVALARALAVEPKVLL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPY 252
Cdd:cd03296 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
2-504 |
4.47e-27 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 114.33 E-value: 4.47e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFrqqqhvrPVVNAIS---LQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGEsl 78
Cdd:PRK10762 1 MQALLQLKGIDKAF-------PGVKALSgaaLNVYPGRVMALVGENGAGKS-TMMKVLTGIYTRDA----GSILYLGK-- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 79 lhasEQTLRGVRGNK---IAMIFQEpmVSLNPLHTLEKQLY---EVLS-----LHRGMRREAARaemigCLDRVGIRQAS 147
Cdd:PRK10762 67 ----EVTFNGPKSSQeagIGIIHQE--LNLIPQLTIAENIFlgrEFVNrfgriDWKKMYAEADK-----LLARLNLRFSS 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 148 QRLRDyphQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSV 227
Cdd:PRK10762 136 DKLVG---ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDDV 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 228 AVMQHGK-----CVENQRADTLLSAPThpyTQKLLNSEPTGDpvpLPAGQApLLEVDKLRVAfpirkGIlkrvvdhnvvv 302
Cdd:PRK10762 212 TVFRDGQfiaerEVADLTEDSLIEMMV---GRKLEDQYPRLD---KAPGEV-RLKVDNLSGP-----GV----------- 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 303 NNISFTLHPGETLGLVGESGSGKSttglALLRLI-----RSEGRIVFDGQSLDTLNRRQLLpvRHRIQVVFQD------- 370
Cdd:PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRT----ELMKVLygalpRTSGYVTLDGHEVVTRSPQDGL--ANGIVYISEDrkrdglv 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 371 ------PNSSLnPRLNvlQIIEEGLRVHQptlsgaQREQQ----------VKAVMME--VGLdpetrhrypaeFSGGQRQ 432
Cdd:PRK10762 343 lgmsvkENMSL-TALR--YFSRAGGSLKH------ADEQQavsdfirlfnIKTPSMEqaIGL-----------LSGGNQQ 402
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 433 RIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG-LSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-236 |
4.99e-27 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 106.74 E-value: 4.99e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQqhvrPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGESLLHASe 83
Cdd:cd03216 1 LELRGITKRFGGV----KALDGVSLSVRRGEVHALLGENGAGKS-TLMKILsgLYKPD------SGEILVDGKEVSFAS- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 qtlrgvrgnkiamifqepmvslnplhtlekqlyevlslhrgmRREAARAemigcldrvGIRQAsqrlrdypHQLSGGERQ 163
Cdd:cd03216 69 ------------------------------------------PRDARRA---------GIAMV--------YQLSVGERQ 89
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:cd03216 90 MVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
306-508 |
5.88e-27 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 108.35 E-value: 5.88e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNrrqllPVRHRIQVVFQDPNssLNPRLN 380
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKST----LLNLIAgfetpQSGRVLINGVDVTAAP-----PADRPVSMLFQENN--LFAHLT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VLQIIEEGLrvhQPTLS-GAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:cd03298 87 VEQNVGLGL---SPGLKlTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03298 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-528 |
1.00e-26 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 113.47 E-value: 1.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFrqqqhvrPVVNA---ISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESL 78
Cdd:PRK11288 1 SSPYLSFDGIGKTF-------PGVKAlddISFDCRAGQVHALMGENGAGKS-TLLKILSGNYQPD----AGSILIDGQEM 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 79 LHASeqtLRGVRGNKIAMIFQEpmVSLNPLHTLEKQLYEVLSLHRG--MRREAARAEMIGCLDRVGIR-QASQRLRDyph 155
Cdd:PRK11288 69 RFAS---TTAALAAGVAIIYQE--LHLVPEMTVAENLYLGQLPHKGgiVNRRLLNYEAREQLEHLGVDiDPDTPLKY--- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 qLSGGERQRVMIAMALLtRPELLIA-DEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK11288 141 -LSIGQRQMVEIAKALA-RNARVIAfDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGR 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 235 CVEnqradtllsapTHPYTQKL----LNSEPTGDPV-------PLPAGqAPLLEVDKL---RVAFPirkgilkrvvdhnv 300
Cdd:PRK11288 218 YVA-----------TFDDMAQVdrdqLVQAMVGREIgdiygyrPRPLG-EVRLRLDGLkgpGLREP-------------- 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 301 vvnnISFTLHPGETLGLVGESGSGKSttglALLRLI-----RSEGRIVFDGQSLDTLNRRQllPVRHRIQVVFQD----- 370
Cdd:PRK11288 272 ----ISFSVRAGEIVGLFGLVGAGRS----ELMKLLygatrRTAGQVYLDGKPIDIRSPRD--AIRAGIMLCPEDrkaeg 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 371 --PNSSLNPRLNVlqiieeGLRVHQPT----LSGAQR----EQQVKAvmmevgLDPETRHRYPA--EFSGGQRQRIAVAR 438
Cdd:PRK11288 342 iiPVHSVADNINI------SARRHHLRagclINNRWEaenaDRFIRS------LNIKTPSREQLimNLSGGNQQKAILGR 409
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVeqGQCERvftapQ 518
Cdd:PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV-AVLFVSSDLPEVLGVADRIVVMREGRIA--GELAR-----E 481
|
570
....*....|
gi 804913277 519 QAYTRQLLAL 528
Cdd:PRK11288 482 QATERQALSL 491
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
23-246 |
1.03e-26 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 108.40 E-value: 1.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSVTALSILRL-LPTPPAVYLSG-DIRfhgesllhasEQTLRGVRgNKIAMIFQE 100
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFyDPTSGEILLDGvDIR----------DLNLRWLR-SQIGLVSQE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 101 PMVSLNPLhtLEKQLYEVLSLHRGMRREAARAEMI---------GCLDRVGIRQAsqrlrdyphQLSGGERQRVMIAMAL 171
Cdd:cd03249 86 PVLFDGTI--AENIRYGKPDATDEEVEEAAKKANIhdfimslpdGYDTLVGERGS---------QLSGGQKQRIAIARAL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 172 LTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVENQRADTLLS 246
Cdd:cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELMA 226
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
305-508 |
1.30e-26 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 114.28 E-value: 1.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRS-----EGRIVFDGQSLDTLNRRQllpVRHRIQVVFQdpNSSLNPRl 379
Cdd:TIGR03797 472 VSLQIEPGEFVAIVGPSGSGKST----LLRLLLGfetpeSGSVFYDGQDLAGLDVQA---VRRQLGVVLQ--NGRLMSG- 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVhqpTLSGAQR-------EQQVKAvmMEVGLdpetrHRYPAE----FSGGQRQRIAVARALILKPSLII 448
Cdd:TIGR03797 542 SIFENIAGGAPL---TLDEAWEaarmaglAEDIRA--MPMGM-----HTVISEgggtLSGGQRQRLLIARALVRKPRILL 611
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 449 LDEPTSSLDKTVQAQILALLKSLQqkhrLAYIFISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:TIGR03797 612 FDEATSALDNRTQAIVSESLERLK----VTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQG 666
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
12-247 |
1.32e-26 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 107.70 E-value: 1.32e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 12 SVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLlhaSEQTLRGVR 90
Cdd:cd03251 5 NVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYdVD------SGRILIDGHDV---RDYTLASLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 91 gNKIAMIFQEPMVSLNPLHtlEKQLYEVLSLHRGMRREAARA----EMIGCLD-----RVGIRQAsqrlrdyphQLSGGE 161
Cdd:cd03251 76 -RQIGLVSQDVFLFNDTVA--ENIAYGRPGATREEVEEAARAanahEFIMELPegydtVIGERGV---------KLSGGQ 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVENQRA 241
Cdd:cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTH 220
|
....*.
gi 804913277 242 DTLLSA 247
Cdd:cd03251 221 EELLAQ 226
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-246 |
1.33e-26 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 113.38 E-value: 1.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFRQQQHvrPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGE 76
Cdd:PRK11160 335 DQVSLTLNNVSFTYPDQPQ--PVLKGLSLQIKAGEKVALLGRTGCGKS----TLLQLLtrawdPQ------QGEILLNGQ 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 77 SLLHASEQTLRgvrgNKIAMIFQEPMVsLNplHTLEKQLyeVLSLHrgmrrEAARAEMIGCLDRVGIR---QASQRLR-- 151
Cdd:PRK11160 403 PIADYSEAALR----QAISVVSQRVHL-FS--ATLRDNL--LLAAP-----NASDEALIEVLQQVGLEkllEDDKGLNaw 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 152 --DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKLaDSVAV 229
Cdd:PRK11160 469 lgEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQF-DRICV 545
|
250
....*....|....*..
gi 804913277 230 MQHGKCVENQRADTLLS 246
Cdd:PRK11160 546 MDNGQIIEQGTHQELLA 562
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
305-514 |
1.64e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 109.02 E-value: 1.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGL---ALLrlIRSEGRIVFDGqsLDTLNRRQLLPVRHRIQVVFQDPNSSLnprlnV 381
Cdd:PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKhmnALL--IPSEGKVYVDG--LDTSDEENLWDIRNKAGMVFQNPDNQI-----V 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 382 LQIIEEGLRVHQPTLSGAQRE--QQVKAVMMEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:PRK13633 100 ATIVEEDVAFGPENLGIPPEEirERVDESLKKVGMYEYRRHA-PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDL-HVVRAlcHQVIVLRQGEVVEQGQCERVF 514
Cdd:PRK13633 179 GRREVVNTIKELNKKYGITIILITHYMeEAVEA--DRIIVMDSGKVVMEGTPKEIF 232
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
3-248 |
1.69e-26 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 107.76 E-value: 1.69e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLLH-A 81
Cdd:COG0410 1 MPMLEVENLHAGYGGIH----VLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPP-----RSGSIRFDGEDITGlP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRgvRGnkIAM------IFqepmvslnPLHTLEKQLYEVLSLHRGMRREAARAEMIgcLDRVgirqasQRLRDYPH 155
Cdd:COG0410 72 PHRIAR--LG--IGYvpegrrIF--------PSLTVEENLLLGAYARRDRAEVRADLERV--YELF------PRLKERRR 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 Q----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQ 231
Cdd:COG0410 132 QragtLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLE 210
|
250
....*....|....*..
gi 804913277 232 HGKCVENQRADTLLSAP 248
Cdd:COG0410 211 RGRIVLEGTAAELLADP 227
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
305-508 |
2.13e-26 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 106.53 E-value: 2.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDtlnrrQLLPVRHRIQVVFQDPnsSLNPRLNVlq 383
Cdd:cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKpDSGEITFDGKSYQ-----KNIEALRRIGALIEAP--GFYPNLTA-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iiEEGLRVHQpTLSGAqREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:cd03268 90 --RENLRLLA-RLLGI-RKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 804913277 464 ILALLKSLQQKHRLayIFI-SHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03268 165 LRELILSLRDQGIT--VLIsSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
305-508 |
2.71e-26 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 106.69 E-value: 2.71e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLdtlnRRQLLPVRHRIQVVFQDPnsSLNPRLNVLQ 383
Cdd:cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKpTSGRATVAGHDV----VREPREVRRRIGIVFQDL--SVDDELTGWE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHqpTLSGAQREQQVKAVMMEVGLdPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:cd03265 93 NLYIHARLY--GVPGAERRERIDELLDFVGL-LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAH 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 804913277 464 ILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03265 170 VWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
3-255 |
4.24e-26 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 107.49 E-value: 4.24e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLHAS 82
Cdd:PRK14271 19 APAMAAVNLTLGFAG----KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EqTLRGVRgnKIAMIFQEPmvSLNPLHTLEKQLYEVLSlHRGMRREAARAEMIGCLDRVGIRQASQ-RLRDYPHQLSGGE 161
Cdd:PRK14271 95 D-VLEFRR--RVGMLFQRP--NPFPMSIMDNVLAGVRA-HKLVPRKEFRGVAQARLTEVGLWDAVKdRLSDSPFRLSGGQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNmgLLFITHNLSIVKKLADSVAVMQHGKCVENQRA 241
Cdd:PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT--VIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246
|
250
....*....|....
gi 804913277 242 DTLLSAPTHPYTQK 255
Cdd:PRK14271 247 EQLFSSPKHAETAR 260
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
28-236 |
4.39e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 107.83 E-value: 4.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASEQtLRGVRgNKIAMIFQEPmvsln 106
Cdd:PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLkPT------SGKIIIDGVDITDKKVK-LSDIR-KKVGLVFQYP----- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 107 plhtlEKQLYEV--------------LSLHRGMRREAARAEMIGcLDRVGIRQASqrlrdyPHQLSGGERQRVMIAMALL 172
Cdd:PRK13637 93 -----EYQLFEEtiekdiafgpinlgLSEEEIENRVKRAMNIVG-LDYEDYKDKS------PFELSGGQKRRVAIAGVVA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 173 TRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
306-510 |
4.41e-26 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 105.71 E-value: 4.41e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNrrqllPVRHRIQVVFQDPNssLNPRLN 380
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKST----LLNLIAgfiepASGSIKVNDQSHTGLA-----PYQRPVSMLFQENN--LFAHLT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VLQIIEEGLRvhqPTLS-GAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:TIGR01277 87 VRQNIGLGLH---PGLKlNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQC 510
Cdd:TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSDC 213
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
305-508 |
5.10e-26 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 105.98 E-value: 5.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpVRHRIQVVFQDPNssLNPRLNVlq 383
Cdd:cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPpRSGSIRFDGRDITGLPPHER--ARAGIGYVPEGRR--IFPELTV-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iiEEGLRVHQPTLSGAQREQQVKAVmmeVGLDP---ETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTV 460
Cdd:cd03224 93 --EENLLLGAYARRRAKRKARLERV---YELFPrlkERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 804913277 461 QAQILALLKSLQQKhRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03224 168 VEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEG 214
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
261-499 |
5.97e-26 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 111.22 E-value: 5.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 261 PTGDPVPLPAGQAPLLEVDKLRVAFPIRKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SE 339
Cdd:TIGR02857 307 PLAGKAPVTAAPASSLEFSGVSVAYPGRRPALR----------PVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDpTE 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 340 GRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPnsslnprLNVLQIIEEGLRVHQPTLSGAQreqqVKAVMMEVGLD---- 415
Cdd:TIGR02857 377 GSIAVNGVPLADADADSW---RDQIAWVPQHP-------FLFAGTIAENIRLARPDASDAE----IREALERAGLDefva 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 416 --PETRHR----YPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLayIFISHDLHVV 489
Cdd:TIGR02857 443 alPQGLDTpigeGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV--LLVTHRLALA 520
|
250
....*....|
gi 804913277 490 rALCHQVIVL 499
Cdd:TIGR02857 521 -ALADRIVVL 529
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
22-246 |
7.09e-26 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 105.78 E-value: 7.09e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGESLlhaSEQTLRGVRgNKIAM 96
Cdd:cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKS----TILRLLfrfydVS------SGSILIDGQDI---REVTLDSLR-RAIGV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 97 IFQEpMVSLNplHTLEKQL-YEVLSLHRGMRREAARAEMIGclDRVgirqasQRLRD-YPHQ-------LSGGERQRVMI 167
Cdd:cd03253 80 VPQD-TVLFN--DTIGYNIrYGRPDATDEEVIEAAKAAQIH--DKI------MRFPDgYDTIvgerglkLSGGEKQRVAI 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 168 AMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVENQRADTLLS 246
Cdd:cd03253 149 ARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-236 |
7.34e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 105.06 E-value: 7.34e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASeq 84
Cdd:cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIlPD------SGEVLFDGKPLDIAA-- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 tlrgvrGNKIAMIFQEPmvSLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQ-ASQRLRdyphQLSGGERQ 163
Cdd:cd03269 69 ------RNRIGYLPEER--GLYPKMKVIDQLVYLAQL-KGLKKEEARRRIDEWLERLELSEyANKRVE----ELSKGNQQ 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:cd03269 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| PhnT |
TIGR03258 |
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding ... |
8-276 |
8.07e-26 |
|
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Pssm-ID: 132302 [Multi-domain] Cd Length: 362 Bit Score: 108.93 E-value: 8.07e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFrqqqHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvyLSGDIRFHGESLLHASEQTlr 87
Cdd:TIGR03258 8 IDHLRVAY----GANTVLDDLSLEIEAGELLALIGKSGCGKT-TLLRAIAGFVKAAG--LTGRIAIADRDLTHAPPHK-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 gvRGnkIAMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAARaEMIGCLDRVGIRQASQRlrdYPHQLSGGERQRVMI 167
Cdd:TIGR03258 79 --RG--LALLFQN--YALFPHLKVEDNVAFGLRAQKMPKADIAE-RVADALKLVGLGDAAAH---LPAQLSGGMQQRIAI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 168 AMALLTRPELLIADEPTTALDVSVQAQILSLLRELQREL-NMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLS 246
Cdd:TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELpELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
|
250 260 270
....*....|....*....|....*....|
gi 804913277 247 APTHPYTQKLLNSEPTGDPVPLPAGQAPLL 276
Cdd:TIGR03258 229 APADGFAAEFLGAANILPAIALGITEAPGL 258
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
305-514 |
1.03e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 106.79 E-value: 1.03e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNR-RQLLPVRHRIQVVFQDPNSSLNPRlNVL 382
Cdd:PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKpTTGTVTVDDITITHKTKdKYIRPVRKRIGMVFQFPESQLFED-TVE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 383 QIIEEGLRVHQPTLsgaqreQQVKA----VMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:PRK13646 105 REIIFGPKNFKMNL------DEVKNyahrLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVF 514
Cdd:PRK13646 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
305-521 |
1.04e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 106.61 E-value: 1.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGqsLDTLNRRQLLPVRHRIQVVFQDPNSSLnprlnVLQ 383
Cdd:PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQkGKVLVSG--IDTGDFSKLQGIRKLVGIVFQNPETQF-----VGR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQPTLSGAQRE--QQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQ 461
Cdd:PRK13644 94 TVEEDLAFGPENLCLPPIEirKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 462 AQILALLKSLQQKHRlAYIFISHDLHVVRAlCHQVIVLRQGEVVEQGQCERVFTAPQQAY 521
Cdd:PRK13644 173 IAVLERIKKLHEKGK-TIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLSDVSLQT 230
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
305-514 |
1.18e-25 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 106.24 E-value: 1.18e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPgeTLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDtLNRRQLLPVRHRIQVVFQDP---------NSS 374
Cdd:PRK13638 22 LDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRpQKGAVLWQGKPLD-YSKRGLLALRQQVATVFQDPeqqifytdiDSD 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 375 LNPRLNVLQIIEEGL--RVHQP-TLSGAQReqqvkavmmevgldpeTRHRYPAEFSGGQRQRIAVARALILKPSLIILDE 451
Cdd:PRK13638 99 IAFSLRNLGVPEAEItrRVDEAlTLVDAQH----------------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 452 PTSSLDKTVQAQILALLKSLQQKHRLAYIfISHDLHVVRALCHQVIVLRQGEVVEQGQCERVF 514
Cdd:PRK13638 163 PTAGLDPAGRTQMIAIIRRIVAQGNHVII-SSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
305-517 |
1.23e-25 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 107.86 E-value: 1.23e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQllpvrHRIQVVFQdpNSSLNPRL 379
Cdd:PRK10851 21 ISLDIPSGQMVALLGPSGSGKTT----LLRIIaglehQTSGHIRFHGTDVSRLHARD-----RKVGFVFQ--HYALFRHM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRV--HQPTLSGAQREQQVKAVMMEVGLdPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK10851 90 TVFDNIAFGLTVlpRRERPNAAAIKAKVTQLLEMVQL-AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:PRK10851 169 AQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
305-508 |
1.67e-25 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 104.62 E-value: 1.67e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSln 376
Cdd:cd03251 21 ISLDIPAGETVALVGPSGSGKST----LVNLIPrfydvDSGRILIDGHDVRDYTLASL---RRQIGLVSQDVflfNDT-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 prlnvlqiIEEGLRVHQPtlsGAQREQQVKA---------VM-MEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSL 446
Cdd:cd03251 92 --------VAENIAYGRP---GATREEVEEAaraanahefIMeLPEGYDTVIGER-GVKLSGGQRQRIAIARALLKDPPI 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 447 IILDEPTSSLDKTVQAQILALLKSLqQKHRLAYIfISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFV-IAHRLSTIEN-ADRIVVLEDGKIVERG 218
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
22-236 |
1.68e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 105.94 E-value: 1.68e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTPPAVYLSGdirfhgesLLHASEQTLRGVRgNKIAMIFQE 100
Cdd:PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLiPSEGKVYVDG--------LDTSDEENLWDIR-NKAGMVFQN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 101 PM-----------VSLNPlhtlekqlyEVLslhrGMRREAARAEMIGCLDRVGIrqasQRLRDY-PHQLSGGERQRVMIA 168
Cdd:PRK13633 94 PDnqivativeedVAFGP---------ENL----GIPPEEIRERVDESLKKVGM----YEYRRHaPHLLSGGQKQRVAIA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 169 MALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKlADSVAVMQHGKCV 236
Cdd:PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV 223
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
305-516 |
1.71e-25 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 105.17 E-value: 1.71e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRSEGRIVFdGQSLDTLNRR----QLLPVRHRIQVVFQDPNSSLNPRLN 380
Cdd:COG1119 22 ISWTVKPGEHWAILGPNGAGKST----LLSLITGDLPPTY-GNDVRLFGERrggeDVWELRKRIGLVSPALQLRFPRDET 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VLQIIEEGL-----RVHQPTlsgAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:COG1119 97 VLDVVLSGFfdsigLYREPT---DEQRERARELLELLGLA-HLADRPFGTLSQGEQRRVLIARALVKDPELLILDEPTAG 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 456 LDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTA 516
Cdd:COG1119 173 LDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLTS 233
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
22-234 |
1.80e-25 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 104.26 E-value: 1.80e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSVTalsiLRLL-----PTppavylSGDIRFHGESL--LHASEqtlrgvRGnkI 94
Cdd:cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTT----LRMIagleePT------SGRIYIGGRDVtdLPPKD------RD--I 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 95 AMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----AEMIgcldrvgirQASQRLRDYPHQLSGGERQRVMIAM 169
Cdd:cd03301 75 AMVFQN--YALYPHMTVYDNIAFGLKLRKVPKDEIDErvrevAELL---------QIEHLLDRKPKQLSGGQRQRVALGR 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 170 ALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-249 |
1.86e-25 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 105.20 E-value: 1.86e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAvylSGDIRFHGESLLHAS 82
Cdd:COG4559 1 MLEAENLSVRLGG----RTLLDDVSLTLRPGELTAIIGPNGAGKS----TLLKLLTgeLTPS---SGEVRLNGRPLAAWS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGVRgnkiAMIFQEpmVSLN-PLHTLEkqlyeVLSLHR---GMRREAARAEMIGCLDRVGIRQASQRlrDYPhQLS 158
Cdd:COG4559 70 PWELARRR----AVLPQH--SSLAfPFTVEE-----VVALGRaphGSSAAQDRQIVREALALVGLAHLAGR--SYQ-TLS 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 159 GGERQRVMIAMALL-------TRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQ 231
Cdd:COG4559 136 GGEQQRVQLARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLH 214
|
250
....*....|....*...
gi 804913277 232 HGKCVENQRADTLLSAPT 249
Cdd:COG4559 215 QGRLVAQGTPEEVLTDEL 232
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
274-507 |
1.90e-25 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 105.33 E-value: 1.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 274 PLLEVDKLRVAFPIRKG---ILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFD 345
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQpqpALQD----------VSLTIESGEFVVALGASGCGKTT----LLNLIAgflapSSGEITLD 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 346 GQsldtlnrrqllPVRH---RIQVVFQDpnSSLNPRLNVLQIIEEGLRvhqptLSG---AQREQQVKAVMMEVGLDpETR 419
Cdd:COG4525 68 GV-----------PVTGpgaDRGVVFQK--DALLPWLNVLDNVAFGLR-----LRGvpkAERRARAEELLALVGLA-DFA 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 420 HRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVL 499
Cdd:COG4525 129 RRRIWQLSGGMRQRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSVEEALFLATRLVVM 208
|
250
....*....|
gi 804913277 500 --RQGEVVEQ 507
Cdd:COG4525 209 spGPGRIVER 218
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
305-528 |
2.00e-25 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 104.49 E-value: 2.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRL-IRSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDpnsslnprlNVL- 382
Cdd:cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFyVPENGRVLVDGHDLALADPAWL---RRQVGVVLQE---------NVLf 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 383 -QIIEEGLRVHQPtlsGAQREQQVKAVMMEVGLD-----PETRHRYPAE----FSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:cd03252 89 nRSIRDNIALADP---GMSMERVIEAAKLAGAHDfiselPEGYDTIVGEqgagLSGGQRQRIAIARALIHNPRILIFDEA 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 453 TSSLDKTVQAQILALLKSLqQKHRLAyIFISHDLHVVRAlCHQVIVLRQGEVVEQGQCERVFTApqQAYTRQLLAL 528
Cdd:cd03252 166 TSALDYESEHAIMRNMHDI-CAGRTV-IIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQL 236
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
305-508 |
2.02e-25 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 107.73 E-value: 2.02e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLnrrqllPVRHR-IQVVFQdpNSSLNPR 378
Cdd:PRK09452 33 LDLTINNGEFLTLLGPSGCGKTT----VLRLIAgfetpDSGRIMLDGQDITHV------PAENRhVNTVFQ--SYALFPH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:PRK09452 101 MTVFENVAFGLRMQK--TPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDY 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:PRK09452 178 KLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
7-257 |
2.08e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 104.92 E-value: 2.08e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 7 AIE--NLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLHASEQ 84
Cdd:PRK14267 4 AIEtvNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRgVRgNKIAMIFQEPmvslNPLHTLekQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQAS------QRLRDYPHQLS 158
Cdd:PRK14267 80 PIE-VR-REVGMVFQYP----NPFPHL--TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAAlwdevkDRLNDYPSNLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNmgLLFITHNLSIVKKLADSVAVMQHGKCVEN 238
Cdd:PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYT--IVLVTHSPAQAARVSDYVAFLYLGKLIEV 229
|
250
....*....|....*....
gi 804913277 239 QRADTLLSAPTHPYTQKLL 257
Cdd:PRK14267 230 GPTRKVFENPEHELTEKYV 248
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
305-515 |
2.68e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 105.07 E-value: 2.68e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPNSSL-------- 375
Cdd:PRK13632 28 VSFEINEGEYVAILGHNGSGKSTISKILTGLLKpQSGEIKIDGITISKENLKEI---RKKIGIIFQNPDNQFigatvedd 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 376 ------NPRLN---VLQIIEEglrvhqptlsgaqreqQVKAVMMEVGLDPEtrhryPAEFSGGQRQRIAVARALILKPSL 446
Cdd:PRK13632 105 iafgleNKKVPpkkMKDIIDD----------------LAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 447 IILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVrALCHQVIVLRQGEVVEQGQCERVFT 515
Cdd:PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEILN 231
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
305-524 |
3.02e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 104.74 E-value: 3.02e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSL---DTLNRRQLLPVRHRIQVVFQDPNSSlnPRLN 380
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiYDSKIKVDGKVLyfgKDIFQIDAIKLRKEVGMVFQQPNPF--PHLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VLQIIEEGLRVHqptlsGAQREQQVKAVMME----VGLDPETRHRY--PA-EFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:PRK14246 107 IYDNIAYPLKSH-----GIKEKREIKKIVEEclrkVGLWKEVYDRLnsPAsQLSGGQQQRLTIARALALKPKVLLMDEPT 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 454 SSLDKTVQAQILALLKSLqqKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQ 524
Cdd:PRK14246 182 SMIDIVNSQAIEKLITEL--KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
22-238 |
4.49e-25 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 102.68 E-value: 4.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTlrgvrgNKIAMIFQEP 101
Cdd:cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKT-TTMKIILGLIKPD----SGEITFDGKSYQKNIEAL------RRIGALIEAP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 102 mvSLNPLHTLEKQLYeVLSLHRGMRREAARAemigCLDRVGIRQ-ASQRLRDYphqlSGGERQRVMIAMALLTRPELLIA 180
Cdd:cd03268 82 --GFYPNLTARENLR-LLARLLGIRKKRIDE----VLDVVGLKDsAKKKVKGF----SLGMKQRLGIALALLGNPDLLIL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 181 DEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVEN 238
Cdd:cd03268 151 DEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
317-527 |
6.55e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 104.41 E-value: 6.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 317 LVGESGSGKSTTGLALLRL------IRSEGRIVFDGQSLdtLNRRQLLPVRHRIQVVFQDPNSSlnpRLNVLQIIEEGLR 390
Cdd:PRK14271 52 LMGPTGSGKTTFLRTLNRMndkvsgYRYSGDVLLGGRSI--FNYRDVLEFRRRVGMLFQRPNPF---PMSIMDNVLAGVR 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 391 VHQpTLSGAQREQQVKAVMMEVGLDPETRHRY---PAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILAL 467
Cdd:PRK14271 127 AHK-LVPRKEFRGVAQARLTEVGLWDAVKDRLsdsPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF 205
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 468 LKSLQQkhRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLLA 527
Cdd:PRK14271 206 IRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVA 263
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
305-504 |
7.46e-25 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 101.14 E-value: 7.46e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPNsslnprlnvlq 383
Cdd:cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRpTSGRVRLDGADISQWDPNEL---GDHVGYLPQDDE----------- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iieeglrvhqpTLSGAQREqqvkavmmevgldpetrhrypAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:cd03246 87 -----------LFSGSIAE---------------------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 464 ILALLKSLqQKHRLAYIFISHDLHVVrALCHQVIVLRQGEV 504
Cdd:cd03246 135 LNQAIAAL-KAAGATRIVIAHRPETL-ASADRILVLEDGRV 173
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
4-201 |
7.61e-25 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 102.17 E-value: 7.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAvylSGDIRFHGESLLHA 81
Cdd:COG4133 1 MMLEAENLSCRRGE----RLLFSGLSFTLAAGEALALTGPNGSGKT----TLLRILAglLPPS---AGEVLWNGEPIRDA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRgvrgnKIAMIFQEPMV--SLNPLhtlekqlyEVLSLHRGMRREAARAEMI-GCLDRVGIRqasqRLRDYP-HQL 157
Cdd:COG4133 70 REDYRR-----RLAYLGHADGLkpELTVR--------ENLRFWAALYGLRADREAIdEALEAVGLA----GLADLPvRQL 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRE 201
Cdd:COG4133 133 SAGQKRRVALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAA 176
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
305-524 |
7.79e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 103.58 E-value: 7.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRL------IRSEGRIVFDGQSLdtLNRR-QLLPVRHRIQVVFQDPNssLNP 377
Cdd:PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMneleseVRVEGRVEFFNQNI--YERRvNLNRLRRQVSMVHPKPN--LFP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 rLNVLQIIEEGLRV--HQPTLsgaQREQQVKAVMMEVGLDPETR---HRYPAEFSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:PRK14258 102 -MSVYDNVAYGVKIvgWRPKL---EIDDIVESALKDADLWDEIKhkiHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 453 TSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVL-----RQGEVVEQGQCERVFTAPQQAYTRQ 524
Cdd:PRK14258 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFkgnenRIGQLVEFGLTKKIFNSPHDSRTRE 254
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
264-526 |
1.04e-24 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 105.69 E-value: 1.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 264 DPVPLPAGQA-----PLLEVDKLRVAFPIRKGIlkrvvdhnvvvNNISFTLHPGETLGLVGESGSGKSTtglaLLRLIR- 337
Cdd:PRK11607 3 DAIPRPQAKTrkaltPLLEIRNLTKSFDGQHAV-----------DDVSLTIYKGEIFALLGASGCGKST----LLRMLAg 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 338 ----SEGRIVFDGQSLDtlnrrQLLPVRHRIQVVFQdpNSSLNPRLNVLQIIEEGLRvhQPTLSGAQREQQVKAVMMEVG 413
Cdd:PRK11607 68 feqpTAGQIMLDGVDLS-----HVPPYQRPINMMFQ--SYALFPHMTVEQNIAFGLK--QDKLPKAEIASRVNEMLGLVH 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 414 LDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALC 493
Cdd:PRK11607 139 MQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMA 217
|
250 260 270
....*....|....*....|....*....|...
gi 804913277 494 HQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK11607 218 GRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFI 250
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-249 |
1.07e-24 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 102.93 E-value: 1.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAvylSGDIRFHGESLLHA 81
Cdd:PRK13548 1 AMLEARNLSVRLGG----RTLLDDVSLTLRPGEVVAILGPNGAGKS----TLLRALSgeLSPD---SGEVRLNGRPLADW 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRGVRgnkiAMIFQEPMVSLnPLhTLEkqlyEVLSL----HRGMRREAAR--AEMIGCLDRVGIRQasqrlRDYPh 155
Cdd:PRK13548 70 SPAELARRR----AVLPQHSSLSF-PF-TVE----EVVAMgrapHGLSRAEDDAlvAAALAQVDLAHLAG-----RDYP- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 QLSGGERQRVMIAMAL--LTRPE----LLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAV 229
Cdd:PRK13548 134 QLSGGEQQRVQLARVLaqLWEPDgpprWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVL 213
|
250 260
....*....|....*....|
gi 804913277 230 MQHGKCVENQRADTLLSAPT 249
Cdd:PRK13548 214 LHQGRLVADGTPAEVLTPET 233
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
311-507 |
1.20e-24 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 102.16 E-value: 1.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 311 PGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLLPVRHR-IQVVFQdpNSSLNPRLNVLQi 384
Cdd:PRK10584 35 RGETIALIGESGSGKST----LLAILAglddgSSGEVSLVGQPLHQMDEEARAKLRAKhVGFVFQ--SFMLIPTLNALE- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 ieeglRVHQPTL----SGAQREQQVKAVMMEVGLDPETRHrYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTV 460
Cdd:PRK10584 108 -----NVELPALlrgeSSRQSRNGAKALLEQLGLGKRLDH-LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 804913277 461 QAQILALLKSLQQKHRLAYIFISHDLHVVrALCHQVIVLRQGEVVEQ 507
Cdd:PRK10584 182 GDKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNGQLQEE 227
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
305-509 |
1.21e-24 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 102.16 E-value: 1.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTlnrrqllPVRHRIqVVFQdpNSSLNPRL 379
Cdd:TIGR01184 4 VNLTIQQGEFISLIGHSGCGKST----LLNLISglaqpTSGGVILEGKQITE-------PGPDRM-VVFQ--NYSLLPWL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:TIGR01184 70 TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQ 509
Cdd:TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQ 198
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
305-508 |
1.22e-24 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 101.50 E-value: 1.22e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGeTLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQslDTLNRRQLLpvRHRIQVVFQDPNSSlnPRL 379
Cdd:cd03264 19 VSLTLGPG-MYGLLGPNGAGKTT----LMRILAtltppSSGTIRIDGQ--DVLKQPQKL--RRRIGYLPQEFGVY--PNF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVlqiiEEGLRvHQPTLSG---AQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:cd03264 88 TV----REFLD-YIAWLKGipsKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 457 DKTVQAQILALLKSLQQKHrlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03264 162 DPEERIRFRNLLSELGEDR--IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-234 |
1.40e-24 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 104.77 E-value: 1.40e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSplLAIENLSVGFRQQQHVRPvvnaISLQVNAGETLALVGESGSGKSVTalsiLRLL-----PTppavylSGDIRFHG 75
Cdd:COG3839 1 MAS--LELENVSKSYGGVEALKD----IDLDIEDGEFLVLLGPSGCGKSTL----LRMIagledPT------SGEILIGG 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 ESL--LHASEqtlrgvRGnkIAMIFQEPMvslnplhtlekqLYEVLSLH---------RGMRREAAR------AEMIG-- 136
Cdd:COG3839 65 RDVtdLPPKD------RN--IAMVFQSYA------------LYPHMTVYeniafplklRKVPKAEIDrrvreaAELLGle 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 137 -CLDRvgirqasqrlrdYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITH 215
Cdd:COG3839 125 dLLDR------------KPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTH 192
|
250 260
....*....|....*....|...
gi 804913277 216 N----LSivkkLADSVAVMQHGK 234
Cdd:COG3839 193 DqveaMT----LADRIAVMNDGR 211
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
305-523 |
1.42e-24 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 104.80 E-value: 1.42e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQslDTLNRrqllPVRHR-IQVVFQdpNSSLNPR 378
Cdd:PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTT----VLRLVAglekpTEGQIFIDGE--DVTHR----SIQQRdICMVFQ--SYALFPH 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:PRK11432 93 MSLGENVGYGLKMLG--VPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 459 TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGqcervftAPQQAYTR 523
Cdd:PRK11432 170 NLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG-------SPQELYRQ 227
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
305-518 |
1.63e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 103.56 E-value: 1.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLD-TLNRRQLLPVRHRIQVVFQDPNSSLNPRlNVL 382
Cdd:PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQpTSGTVTIGERVITaGKKNKKLKPLRKKVGIVFQFPEHQLFEE-TVE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 383 QIIEEGlrvhqPT---LSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:PRK13634 105 KDICFG-----PMnfgVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:PRK13634 180 GRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
8-237 |
1.72e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 101.92 E-value: 1.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLptPPAvylSGDIRFHGESLLHASEQTLR 87
Cdd:cd03254 5 FENVNFSYDEK---KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY--DPQ---KGQILIDGIDIRDISRKSLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 gvrgNKIAMIFQEPMVslnplhtLEKQLYEVLSLHrgmRREAARAEMIGCLDRVGIRQASQRLRD-YPHQ-------LSG 159
Cdd:cd03254 77 ----SMIGVVLQDTFL-------FSGTIMENIRLG---RPNATDEEVIEAAKEAGAHDFIMKLPNgYDTVlgenggnLSQ 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVE 237
Cdd:cd03254 143 GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKN-ADKILVLDDGKIIE 217
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
3-236 |
1.83e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 102.76 E-value: 1.83e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSvgFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPpavyLSGDIRFHGESLlhaS 82
Cdd:PRK13632 5 SVMIKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKS-TISKILTGLLKP----QSGEIKIDGITI---S 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGVRgNKIAMIFQEP-------MVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRvgirqasqrlrdYPH 155
Cdd:PRK13632 75 KENLKEIR-KKIGIIFQNPdnqfigaTVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK------------EPQ 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVkKLADSVAVMQHGKC 235
Cdd:PRK13632 142 NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKL 220
|
.
gi 804913277 236 V 236
Cdd:PRK13632 221 I 221
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-255 |
1.94e-24 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 102.30 E-value: 1.94e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSIL-RLLPTPPAVYLSGDIRFHGESLLHASEQ 84
Cdd:PRK14247 4 IEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKS-TLLRVFnRLIELYPEARVSGEVYLDGQDIFKMDVI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRgvrgNKIAMIFQEPmvslNPLHTLekQLYEVLSLHRGMRREA-ARAEMigcLDRVgiRQA----------SQRLRDY 153
Cdd:PRK14247 79 ELR----RRVQMVFQIP----NPIPNL--SIFENVALGLKLNRLVkSKKEL---QERV--RWAlekaqlwdevKDRLDAP 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElnMGLLFITHNLSIVKKLADSVAVMQHG 233
Cdd:PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKG 221
|
250 260
....*....|....*....|..
gi 804913277 234 KCVENQRADTLLSAPTHPYTQK 255
Cdd:PRK14247 222 QIVEWGPTREVFTNPRHELTEK 243
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
22-245 |
2.01e-24 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 106.97 E-value: 2.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTLRgvrgNKIAMIFQEP 101
Cdd:PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKS-TLINLLQRVFDPQ----SGRILIDGTDIRTVTRASLR----RNIAVVFQDA 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 102 MVslnplhtLEKQLYEVLSLHRG------MRREAARAEMIGCLDRVGIR---QASQRLRdyphQLSGGERQRVMIAMALL 172
Cdd:PRK13657 419 GL-------FNRSIEDNIRVGRPdatdeeMRAAAERAQAHDFIERKPDGydtVVGERGR----QLSGGERQRLAIARALL 487
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 173 TRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVENQRADTLL 245
Cdd:PRK13657 488 KDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVRN-ADRILVFDNGRVVESGSFDELV 557
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
305-508 |
2.07e-24 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 107.21 E-value: 2.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSlnprln 380
Cdd:COG5265 377 VSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDvTSGRILIDGQDIRDVTQASL---RAAIGIVPQDTvlfNDT------ 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 vlqiIEEGLRVHQPtlsGAQREQQVKAVMM-------------------EVGLdpetrhrypaEFSGGQRQRIAVARALI 441
Cdd:COG5265 448 ----IAYNIAYGRP---DASEEEVEAAARAaqihdfieslpdgydtrvgERGL----------KLSGGEKQRVAIARTLL 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 442 LKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHrlAYIFISHDLH-VVRAlcHQVIVLRQGEVVEQG 508
Cdd:COG5265 511 KNPPILIFDEATSALDSRTERAIQAALREVARGR--TTLVIAHRLStIVDA--DEILVLEAGRIVERG 574
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
29-239 |
2.28e-24 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 101.03 E-value: 2.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 29 SLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASeqtlrgVRGNKIAMIFQEPmvSLNPL 108
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKS-TLLNLIAGFETPQ----SGRVLINGVDVTAAP------PADRPVSMLFQEN--NLFAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 109 HTLEKQLyeVLSLHRGMR-REAARAEMIGCLDRVGIRQASQRLrdyPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187
Cdd:cd03298 85 LTVEQNV--GLGLSPGLKlTAEDRQAIEVALARVGLAGLEKRL---PGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 188 DVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQ 239
Cdd:cd03298 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
8-237 |
2.89e-24 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 101.03 E-value: 2.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQqqHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHASEQTLR 87
Cdd:cd03244 5 FKNVSLRYRP--NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS-----SGSILIDGVDISKIGLHDLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 gvrgNKIAMIFQEPMV-------SLNPLHtlekqlyevlslhrgmrrEAARAEMIGCLDRVGIRQASQRLR---DYPH-- 155
Cdd:cd03244 78 ----SRISIIPQDPVLfsgtirsNLDPFG------------------EYSDEELWQALERVGLKEFVESLPgglDTVVee 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 ---QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQH 232
Cdd:cd03244 136 ggeNLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDK 212
|
....*
gi 804913277 233 GKCVE 237
Cdd:cd03244 213 GRVVE 217
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
276-508 |
4.21e-24 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 100.91 E-value: 4.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 276 LEVDKLRVAfPIRKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTTGLALL---RLIRSEGRIVFDGQSLdtL 352
Cdd:COG0396 1 LEIKNLHVS-VEGKEILK----------GVNLTIKPGEVHAIMGPNGSGKSTLAKVLMghpKYEVTSGSILLDGEDI--L 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 353 NrrqlLPVRHR----IQVVFQDP-------NSSLnprlnvLQIIEEGLRvhQPTLSGAQREQQVKAVMMEVGLDPETRHR 421
Cdd:COG0396 68 E----LSPDERaragIFLAFQYPveipgvsVSNF------LRTALNARR--GEELSAREFLKLLKEKMKELGLDEDFLDR 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 422 YPAE-FSGGQRQRIAVARALILKPSLIILDEPTSSLDktVQA-QILA-LLKSLQQKHRlAYIFISHD---LHVVRAlcHQ 495
Cdd:COG0396 136 YVNEgFSGGEKKRNEILQMLLLEPKLAILDETDSGLD--IDAlRIVAeGVNKLRSPDR-GILIITHYqriLDYIKP--DF 210
|
250
....*....|...
gi 804913277 496 VIVLRQGEVVEQG 508
Cdd:COG0396 211 VHVLVDGRIVKSG 223
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
305-508 |
6.23e-24 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 99.97 E-value: 6.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSLnpRLN 380
Cdd:cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKpTSGSVLLDGTDIRQLDPADL---RRNIGYVPQDVtlfYGTL--RDN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 vlqiIEEGLRVHQptlsgaqrEQQVKAVMMEVGLDPETRhRYPAEF-----------SGGQRQRIAVARALILKPSLIIL 449
Cdd:cd03245 98 ----ITLGAPLAD--------DERILRAAELAGVTDFVN-KHPNGLdlqigergrglSGGQRQAVALARALLNDPPILLL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 450 DEPTSSLDKTVQAQILALLKSLQQKHRLayIFISHDLHVVrALCHQVIVLRQGEVVEQG 508
Cdd:cd03245 165 DEPTSAMDMNSEERLKERLRQLLGDKTL--IIITHRPSLL-DLVDRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
2-234 |
6.43e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 101.35 E-value: 6.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFRQQQHvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLlha 81
Cdd:PRK13650 1 MSNIIEVKNLTFKYKEDQE-KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-----SGQIIIDGDLL--- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRGVRgNKIAMIFQEP-------MVSLNPLHTLEKQlyevlslhrGMRREAARAEMIGCLDRVGIRQASQRlrdYP 154
Cdd:PRK13650 72 TEENVWDIR-HKIGMVFQNPdnqfvgaTVEDDVAFGLENK---------GIPHEEMKERVNEALELVGMQDFKER---EP 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVkKLADSVAVMQHGK 234
Cdd:PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQ 217
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
305-504 |
6.68e-24 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 99.85 E-value: 6.68e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPnsSLNPRlNVLQ 383
Cdd:cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQgGQVLLDGKPISQYEHKYL---HSKVSLVGQEP--VLFAR-SLQD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLrvhQPTLSGAQREQQVKA------VMMEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:cd03248 107 NIAYGL---QSCSFECVKEAAQKAhahsfiSELASGYDTEVGEK-GSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 804913277 458 KTVQAQILALLKSLQQKHRlaYIFISHDLHVV-RAlcHQVIVLRQGEV 504
Cdd:cd03248 183 AESEQQVQQALYDWPERRT--VLVIAHRLSTVeRA--DQILVLDGGRI 226
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
28-234 |
9.52e-24 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 99.24 E-value: 9.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGESLLHASEQTLRGVRgNKIAMIFQEPM 102
Cdd:TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKT----TLLKLLygaltPS------RGQVRIAGEDVNRLRGRQLPLLR-RRIGVVFQDFR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 103 VSLNplhtleKQLYE--VLSLH-RGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQRVMIAMALLTRPELLI 179
Cdd:TIGR02673 90 LLPD------RTVYEnvALPLEvRGKKEREIQRRVGAALRQVGL---EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQReLNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:TIGR02673 161 ADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
40-252 |
1.20e-23 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 101.80 E-value: 1.20e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 40 LVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQtLRGvrgnkIAMIFQEpmVSLNPLHTLEKQLYEVL 119
Cdd:TIGR01187 1 LLGPSGCGKT-TLLRLLAGFEQPD----SGSIMLDGEDVTNVPPH-LRH-----INMVFQS--YALFPHMTVEENVAFGL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 120 SLhRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLL 199
Cdd:TIGR01187 68 KM-RKVPRAEIKPRVLEALRLVQLEEFADR---KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 804913277 200 RELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPY 252
Cdd:TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
305-508 |
1.56e-23 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 104.82 E-value: 1.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSL--NPR 378
Cdd:TIGR01846 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQhGQVLVDGVDLAIADPAWL---RRQMGVVLQENvlfSRSIrdNIA 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLrVHQPTLSGAQR--EQQVKAVMMEVGldpetrhRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:TIGR01846 553 LCNPGAPFEHV-IHAAKLAGAHDfiSELPQGYNTEVG-------EKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL 624
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 457 DKTVQAQILALLKSLQQKHRLayIFISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:TIGR01846 625 DYESEALIMRNMREICRGRTV--IIIAHRLSTVRA-CDRIIVLEKGQIAESG 673
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
3-230 |
2.70e-23 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 103.14 E-value: 2.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtpPAvylSGDIRFHGESLLHAS 82
Cdd:TIGR02857 319 ASSLEFSGVSVAYPGR---RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PT---EGSIAVNGVPLADAD 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGvrgnKIAMIFQEPmvslnplHTLEKQLYEVLSLHRgmrREAARAEMIGCLDRVGIRQASQRLR--------DYP 154
Cdd:TIGR02857 391 ADSWRD----QIAWVPQHP-------FLFAGTIAENIRLAR---PDASDAEIREALERAGLDEFVAALPqgldtpigEGG 456
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSiVKKLADSVAVM 230
Cdd:TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLA-LAALADRIVVL 529
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
305-520 |
2.75e-23 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 103.79 E-value: 2.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGqsldtLNRRQLLP--VRHRIQVVFQDP---NSSLnpR 378
Cdd:TIGR03375 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQpTEGSVLLDG-----VDIRQIDPadLRRNIGYVPQDPrlfYGTL--R 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVlqiieeglrvhqpTLSGAQ-REQQVKAVMMEVGLDPETRhRYPAEF-----------SGGQRQRIAVARALILKPSL 446
Cdd:TIGR03375 557 DNI-------------ALGAPYaDDEEILRAAELAGVTEFVR-RHPDGLdmqigergrslSGGQRQAVALARALLRDPPI 622
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 447 IILDEPTSSLDKTVQAQILALLKSLQQKHRLayIFISHDLHVVRaLCHQVIVLRQGEVVEQGQCERVFTAPQQA 520
Cdd:TIGR03375 623 LLLDEPTSAMDNRSEERFKDRLKRWLAGKTL--VLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEALRKG 693
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
317-526 |
2.85e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 99.15 E-value: 2.85e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 317 LVGESGSGKSTTGLALLRLI------RSEGRIVFDGQSLDTLNRRQLlPVRHRIQVVFQDPNSSlnPRLNVLQIIEEGLR 390
Cdd:PRK14267 35 LMGPSGCGKSTLLRTFNRLLelneeaRVEGEVRLFGRNIYSPDVDPI-EVRREVGMVFQYPNPF--PHLTIYDNVAIGVK 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 391 VHQPTLSGAQREQQVKAVMMEVGLDPETRHR---YPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILAL 467
Cdd:PRK14267 112 LNGLVKSKKELDERVEWALKKAALWDEVKDRlndYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 468 LksLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQQAYTRQLL 526
Cdd:PRK14267 192 L--FELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYV 248
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
256-520 |
3.03e-23 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 103.29 E-value: 3.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 256 LLNSEPTGDPVPLPAGQAPLlEVDKLRVAFPIRKG-ILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLR 334
Cdd:COG4618 312 LAAVPAEPERMPLPRPKGRL-SVENLTVVPPGSKRpILRG----------VSFSLEPGEVLGVIGPSGSGKST----LAR 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 335 LI-----RSEGRIVFDGQSLDTLNRRQL------LPvrhriQVV-------------FQDPNSSlnprlnvlQIIEEGLR 390
Cdd:COG4618 377 LLvgvwpPTAGSVRLDGADLSQWDREELgrhigyLP-----QDVelfdgtiaeniarFGDADPE--------KVVAAAKL 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 391 --VHQPTLSGAQreqqvkavmmevGLDpeTR-----HRypaeFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:COG4618 444 agVHEMILRLPD------------GYD--TRigeggAR----LSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAA 505
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 464 ILALLKSLQQKHRLAyIFISHDLHVVRAlCHQVIVLRQGEVVEQGQCERVFTAPQQA 520
Cdd:COG4618 506 LAAAIRALKARGATV-VVITHRPSLLAA-VDKLLVLRDGRVQAFGPRDEVLARLARP 560
|
|
| CP_lyasePhnL |
TIGR02324 |
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P ... |
305-497 |
3.39e-23 |
|
phosphonate C-P lyase system protein PhnL; Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Pssm-ID: 131377 [Multi-domain] Cd Length: 224 Bit Score: 97.85 E-value: 3.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVF--DGQSLD--TLNRRQLLPVR-HRIQVVFQdpnsSLN-- 376
Cdd:TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLpDSGRILVrhEGAWVDlaQASPREVLEVRrKTIGYVSQ----FLRvi 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLQIIEEGLRVhqptlSGAQREQ---QVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:TIGR02324 103 PRVSALEVVAEPLLE-----RGVPREAaraRARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 804913277 454 SSLDKTVQAQILALLKSLQQKhRLAYIFISHDLHVVRALCHQVI 497
Cdd:TIGR02324 178 ASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVM 220
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-259 |
3.80e-23 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 101.07 E-value: 3.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQqhvrPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGESLLH 80
Cdd:PRK11607 15 ALTPLLEIRNLTKSFDGQ----HAVDDVSLTIYKGEIFALLGASGCGKS-TLLRMLAGFEQPTA----GQIMLDGVDLSH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTlrgvrgNKIAMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRRE-AAR-AEMIGCldrVGIRQASQRlrdYPHQLS 158
Cdd:PRK11607 86 VPPYQ------RPINMMFQS--YALFPHMTVEQNIAFGLKQDKLPKAEiASRvNEMLGL---VHMQEFAKR---KPHQLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQI-LSLLRELQReLNMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMqLEVVDILER-VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230
|
250 260
....*....|....*....|..
gi 804913277 238 NQRADTLLSAPTHPYTQKLLNS 259
Cdd:PRK11607 231 IGEPEEIYEHPTTRYSAEFIGS 252
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
28-262 |
4.21e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 99.13 E-value: 4.21e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSV-----TALsilrLLPTppavylSGDIRFHGESL-LHASEQTLRGVRgNKIAMIFQEP 101
Cdd:PRK13641 26 ISFELEEGSFVALVGHTGSGKSTlmqhfNAL----LKPS------SGTITIAGYHItPETGNKNLKKLR-KKVSLVFQFP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 102 mvslnplhtlEKQLYE--VLS------LHRGMRREAARAEMIGCLDRVGIRQasQRLRDYPHQLSGGERQRVMIAMALLT 173
Cdd:PRK13641 95 ----------EAQLFEntVLKdvefgpKNFGFSEDEAKEKALKWLKKVGLSE--DLISKSPFELSGGQMRRVAIAGVMAY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 174 RPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLfITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPThpYT 253
Cdd:PRK13641 163 EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL-VTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE--WL 239
|
....*....
gi 804913277 254 QKLLNSEPT 262
Cdd:PRK13641 240 KKHYLDEPA 248
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
25-257 |
4.50e-23 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 101.26 E-value: 4.50e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 25 VNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEpmV 103
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIePT------RGQVLIDGVDIAKISDAELREVRRKKIAMVFQS--F 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 104 SLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQASQrlrDYPHQLSGGERQRVMIAMALLTRPELLIADEP 183
Cdd:PRK10070 116 ALMPHMTVLDNTAFGMEL-AGINAEERREKALDALRQVGLENYAH---SYPDELSGGMRQRVGLARALAINPDILLMDEA 191
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 184 TTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQKLL 257
Cdd:PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF 265
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
307-508 |
5.23e-23 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 97.73 E-value: 5.23e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 307 FTLH--PGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQsldtlNRRQLLPVRHRIQVVFQDPNssLNPRL 379
Cdd:PRK10771 18 FDLTveRGERVAILGPSGAGKST----LLNLIAgfltpASGSLTLNGQ-----DHTTTPPSRRPVSMLFQENN--LFSHL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIeeGLRVHqP--TLSGAQReQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK10771 87 TVAQNI--GLGLN-PglKLNAAQR-EKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:PRK10771 162 PALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDG 212
|
|
| MsbA_rel |
TIGR02204 |
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ... |
256-516 |
5.72e-23 |
|
ABC transporter, permease/ATP-binding protein; This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Pssm-ID: 131259 [Multi-domain] Cd Length: 576 Bit Score: 102.47 E-value: 5.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 256 LLNSEPT----GDPVPLPAGQAPLLEVDKLRVAFPIRKGILkrvvdhnvVVNNISFTLHPGETLGLVGESGSGKSTTGLA 331
Cdd:TIGR02204 314 LLQAEPDikapAHPKTLPVPLRGEIEFEQVNFAYPARPDQP--------ALDGLNLTVRPGETVALVGPSGAGKSTLFQL 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 332 LLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPN---SSlnprlnvlqiIEEGLRVHQPTLSGAQ-REQQVK 406
Cdd:TIGR02204 386 LLRFYDpQSGRILLDGVDLRQLDPAEL---RARMALVPQDPVlfaAS----------VMENIRYGRPDATDEEvEAAARA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 407 AVMME-VGLDPETRHRYPAE----FSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLqQKHRLAYIf 481
Cdd:TIGR02204 453 AHAHEfISALPEGYDTYLGErgvtLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGRTTLI- 530
|
250 260 270
....*....|....*....|....*....|....*
gi 804913277 482 ISHDLHVVRAlCHQVIVLRQGEVVEQGQCERVFTA 516
Cdd:TIGR02204 531 IAHRLATVLK-ADRIVVMDQGRIVAQGTHAELIAK 564
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
305-507 |
5.79e-23 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 100.30 E-value: 5.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNrrqllPVRHRIQVVFQdpNSSLNPRL 379
Cdd:PRK11650 23 IDLDVADGEFIVLVGPSGCGKST----LLRMVAgleriTSGEIWIGGRVVNELE-----PADRDIAMVFQ--NYALYPHM 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQptLSGAQREQQVKAV--MMEVG--LDpetrhRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:PRK11650 92 SVRENMAYGLKIRG--MPKAEIEERVAEAarILELEplLD-----RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 804913277 456 LDKTVQAQILALLKSLQQKHRLAYIFISHDLhvVRA--LCHQVIVLRQGeVVEQ 507
Cdd:PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ--VEAmtLADRVVVMNGG-VAEQ 215
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-255 |
5.93e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 98.20 E-value: 5.93e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPT-PPAVYLSGDIRFHGESLLHASEQTLRgvrgNKIAMIFQE 100
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIyDSKIKVDGKVLYFGKDIFQIDAIKLR----KEVGMVFQQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 101 PmvslNPLHTLE--KQLYEVLSLHRGMRREAARAEMIGCLDRVGI-RQASQRLRDYPHQLSGGERQRVMIAMALLTRPEL 177
Cdd:PRK14246 99 P----NPFPHLSiyDNIAYPLKSHGIKEKREIKKIVEECLRKVGLwKEVYDRLNSPASQLSGGQQQRLTIARALALKPKV 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 178 LIADEPTTALDVSVQAQILSLLRELQRElnMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQK 255
Cdd:PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
3-217 |
6.09e-23 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 97.85 E-value: 6.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVgFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAVylSGDIRFHGESLLH 80
Cdd:COG1119 1 DPLLELRNVTV-RRGG---KTILDDISWTVKPGEHWAILGPNGAGKS----TLLSLITgdLPPTY--GNDVRLFGERRGG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLR---GVRGNKIAMIFQepmVSLNPLHTLEKQLYEVLSLHRG----MRREAARAemigcLDRVGIrqasQRLRDY 153
Cdd:COG1119 71 EDVWELRkriGLVSPALQLRFP---RDETVLDVVLSGFFDSIGLYREptdeQRERAREL-----LELLGL----AHLADR 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 154 P-HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNL 217
Cdd:COG1119 139 PfGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHV 203
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
22-234 |
6.55e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 99.03 E-value: 6.55e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGESLlhaSEQTLRGV------RGnki 94
Cdd:COG4152 14 KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILaPD------SGEVLWDGEPL---DPEDRRRIgylpeeRG--- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 95 amifqepmvsLNPLHTLEKQLYEVLSLHrGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQRVMIAMALLTR 174
Cdd:COG4152 82 ----------LYPKMKVGEQLVYLARLK-GLSKAEAKRRADEWLERLGL---GDRANKKVEELSKGNQQKVQLIAALLHD 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 175 PELLIADEPTTALD-VSVQAqILSLLRELQRElnmG--LLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:COG4152 148 PELLILDEPFSGLDpVNVEL-LKDVIRELAAK---GttVIFSSHQMELVEELCDRIVIINKGR 206
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
305-505 |
9.00e-23 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 101.44 E-value: 9.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRS-------EGRIVFDGQSLDTLNRRQllPVRHRIQVVFQDpnSSLNP 377
Cdd:TIGR02633 20 IDLEVRPGECVGLCGENGAGKST----LMKILSGvyphgtwDGEIYWSGSPLKASNIRD--TERAGIVIIHQE--LTLVP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 RLNVLQIIEEGlrvHQPTLSGAQRE-----QQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:TIGR02633 92 ELSVAENIFLG---NEITLPGGRMAynamyLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEP 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 804913277 453 TSSLDKTVQAQILALLKSLQQkHRLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:TIGR02633 169 SSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
305-527 |
9.55e-23 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 101.85 E-value: 9.55e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQdpnsslNPRLnVLQI 384
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESW---RKHLSWVGQ------NPQL-PHGT 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 IEEGLRVHQPTLSGAQREQQVKAV-------MMEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK11174 439 LRDNVLLGNPDASDEQLQQALENAwvseflpLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 458 KTVQAQILALLKSLQQKHrlAYIFISHDLHVVRAlCHQVIVLRQGEVVEQGQCERVftAPQQAYTRQLLA 527
Cdd:PRK11174 518 AHSEQLVMQALNAASRRQ--TTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAEL--SQAGGLFATLLA 582
|
|
| NHLM_micro_ABC1 |
TIGR03796 |
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes ... |
306-517 |
1.02e-22 |
|
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein; This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274788 [Multi-domain] Cd Length: 710 Bit Score: 102.33 E-value: 1.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDpnsslnprLNVLQ- 383
Cdd:TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQpWSGEILFDGIPREEIPREVL---ANSVAMVDQD--------IFLFEg 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQPTLSGAQREQQVK--AVMMEVGLDPETRHRYPAE----FSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:TIGR03796 568 TVRDNLTLWDPTIPDADLVRACKdaAIHDVITSRPGGYDAELAEgganLSGGQRQRLEIARALVRNPSILILDEATSALD 647
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 458 KTVQAQILALLKslqqKHRLAYIFISHDLHVVRAlCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:TIGR03796 648 PETEKIIDDNLR----RRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAVG 702
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
3-241 |
1.11e-22 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 101.72 E-value: 1.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHAS 82
Cdd:PRK10535 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKS-TLMNILGCLDKPT----SGTYRVAGQDVATLD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGVRGNKIAMIFQEpmVSLNPlHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGER 162
Cdd:PRK10535 77 ADALAQLRREHFGFIFQR--YHLLS-HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGL---EDRVEYQPSQLSGGQQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKlADSVAVMQHGKCVENQRA 241
Cdd:PRK10535 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDPQVAAQ-AERVIEIRDGEIVRNPPA 227
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
8-247 |
1.13e-22 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 101.72 E-value: 1.13e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLPTppaVYL--SGDIRFHGESLLHASEQT 85
Cdd:TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKS----TLVNLIPR---FYEpdSGQILLDGHDLADYTLAS 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRgvrgNKIAMIFQEpmvslnpLHTLEKQLYEvlSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQ--------L 157
Cdd:TIGR02203 404 LR----RQVALVSQD-------VVLFNDTIAN--NIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTpigengvlL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVE 237
Cdd:TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEK-ADRIVVMDDGRIVE 547
|
250
....*....|
gi 804913277 238 NQRADTLLSA 247
Cdd:TIGR02203 548 RGTHNELLAR 557
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
273-508 |
2.04e-22 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 95.82 E-value: 2.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRV---AFPIRKGIlkrvvdhnvvvnniSFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQS 348
Cdd:COG0410 1 MPMLEVENLHAgygGIHVLHGV--------------SLEVEEGEIVALLGRNGAGKTTLLKAISGLLPpRSGSIRFDGED 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 349 LDTLNRRQLlpVRHRI-QV-----VFqdpnsslnPRLNVlqiiEEGLRVHQPTLSGAQREQQVKAVMMEvgLDP---ETR 419
Cdd:COG0410 67 ITGLPPHRI--ARLGIgYVpegrrIF--------PSLTV----EENLLLGAYARRDRAEVRADLERVYE--LFPrlkERR 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 420 HRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKhRLAYIFISHDLHVVRALCHQVIVL 499
Cdd:COG0410 131 RQRAGTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVL 209
|
....*....
gi 804913277 500 RQGEVVEQG 508
Cdd:COG0410 210 ERGRIVLEG 218
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
23-234 |
2.09e-22 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 95.55 E-value: 2.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGESLLHASEQTLRGVRgNKIAMIFQE 100
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKS-TLLKLIykEELPT------SGTIRVNGQDVSDLRGRAIPYLR-RKIGVVFQD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 101 PMVSLNpLHTLEKQLYEVLSLHRGMRREAARAEMIgcLDRVGIrqaSQRLRDYPHQLSGGERQRVMIAMALLTRPELLIA 180
Cdd:cd03292 87 FRLLPD-RNVYENVAFALEVTGVPPREIRKRVPAA--LELVGL---SHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 181 DEPTTALDVSVQAQILSLLRELQRelnMG--LLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLLKKINK---AGttVVVATHAKELVDTTRHRVIALERGK 213
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
3-235 |
3.34e-22 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 95.95 E-value: 3.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILrllptppavylsgdirfhgeSLLHAS 82
Cdd:PRK09544 2 TSLVSLENVSVSFGQ----RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL--------------------GLVAPD 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGVRGNKIAMIFQEpmVSLNPlhTLEKQLYEVLSLHRGMRReaarAEMIGCLDRVgirQASQrLRDYPHQ-LSGGE 161
Cdd:PRK09544 58 EGVIKRNGKLRIGYVPQK--LYLDT--TLPLTVNRFLRLRPGTKK----EDILPALKRV---QAGH-LIDAPMQkLSGGE 125
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKC 235
Cdd:PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHIC 199
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
29-246 |
3.45e-22 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 95.42 E-value: 3.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 29 SLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESllHASEQTLRgvrgNKIAMIFQEPmvSLNPL 108
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKS-TLLNLIAGFLTPA----SGSLTLNGQD--HTTTPPSR----RPVSMLFQEN--NLFSH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 109 HTLEKQLyeVLSLHRGMRREAA-RAEMIGCLDRVGIRQASQRLrdyPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187
Cdd:PRK10771 86 LTVAQNI--GLGLNPGLKLNAAqREKLHAIARQMGIEDLLARL---PGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 188 DVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLS 246
Cdd:PRK10771 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-236 |
4.62e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 96.07 E-value: 4.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQHVrpvVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPpavyLSGDIRFHGESLLH 80
Cdd:PRK13636 1 MEDYILKVEELNYNYSDGTHA---LKGININIKKGEVTAILGGNGAGKS-TLFQNLNGILKP----SSGRILFDGKPIDY 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 aSEQTLRGVRGNkIAMIFQEPMVSLNPLHTLEKQLYEVLSLhrGMRREAARAEMIGCLDRVGIrqasQRLRDYP-HQLSG 159
Cdd:PRK13636 73 -SRKGLMKLRES-VGMVFQDPDNQLFSASVYQDVSFGAVNL--KLPEDEVRKRVDNALKRTGI----EHLKDKPtHCLSF 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK13636 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
24-238 |
4.94e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 95.91 E-value: 4.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 24 VVNAISLQVNAGETLALVGESGSGKSVTAL---SILRllPTPPAVYLSGD-IRFHGESLLHASEqtlrgvrgnKIAMIFQ 99
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLhfnGILK--PTSGEVLIKGEpIKYDKKSLLEVRK---------TVGIVFQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 100 EPMVSLNPLHTLEKQLYEVLSLhrGMRREAARAEMIGCLDRVGIRQASQRLrdyPHQLSGGERQRVMIAMALLTRPELLI 179
Cdd:PRK13639 86 NPDDQLFAPTVEEDVAFGPLNL--GLSKEEVEKRVKEALKAVGMEGFENKP---PHHLSGGQKKRVAIAGILAMKPEIIV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVEN 238
Cdd:PRK13639 161 LDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
276-508 |
5.11e-22 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 94.71 E-value: 5.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 276 LEVDKLRVAFPIR----------KGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVF 344
Cdd:cd03267 1 IEVSNLSKSYRVYskepgligslKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQpTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 345 DGqsLDTLNRRQLLpvRHRIQVVFQDPNS---SLNPRlnvlqiieEGLRVHQPT--LSGAQREQQVK--AVMMEVG--LD 415
Cdd:cd03267 81 AG--LVPWKRRKKF--LRRIGVVFGQKTQlwwDLPVI--------DSFYLLAAIydLPPARFKKRLDelSELLDLEelLD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 416 PETRhrypaEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQ 495
Cdd:cd03267 149 TPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR 223
|
250
....*....|...
gi 804913277 496 VIVLRQGEVVEQG 508
Cdd:cd03267 224 VLVIDKGRLLYDG 236
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
305-486 |
7.44e-22 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 94.77 E-value: 7.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTlnrrqllPVRHRiQVVFQdpNSSLNPRL 379
Cdd:PRK11248 20 INLTLESGELLVVLGPSGCGKTT----LLNLIAgfvpyQHGSITLDGKPVEG-------PGAER-GVVFQ--NEGLLPWR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVhqPTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:PRK11248 86 NVQDNVAFGLQL--AGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162
|
170 180
....*....|....*....|....*..
gi 804913277 460 VQAQILALLKSLQQKHRLAYIFISHDL 486
Cdd:PRK11248 163 TREQMQTLLLKLWQETGKQVLLITHDI 189
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
305-516 |
8.52e-22 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 94.70 E-value: 8.52e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQSLDTLNRRQL------LPVRHriqvvfqdpnssLNP 377
Cdd:PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQsGTVFLGDKPISMLSSRQLarrlalLPQHH------------LTP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 rlnvlqiieEGLRVHQ-------PTLS-----GAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPS 445
Cdd:PRK11231 89 ---------EGITVRElvaygrsPWLSlwgrlSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTP 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 446 LIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTA 516
Cdd:PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGK-TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
305-517 |
9.45e-22 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 94.15 E-value: 9.45e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQllpvRHRIQVVFQDPNSSLNPRLNVLQ 383
Cdd:cd03218 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKpDSGKILLDGQDITKLPMHK----RARLGIGYLPQEASIFRKLTVEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHqpTLSGAQREQQVKAVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:cd03218 95 NILAVLEIR--GLSKKEREEKLEELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 464 ILALLKSLqqKHRLAYIFIS-HDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:cd03218 172 IQKIIKIL--KDRGIGVLITdHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
305-518 |
1.03e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 95.28 E-value: 1.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST-----TGLallrLIRSEGRIVFDGQSLdTLN--RRQLLPVRHRIQVVFQDPNSSLNP 377
Cdd:PRK13641 26 ISFELEEGSFVALVGHTGSGKSTlmqhfNAL----LKPSSGTITIAGYHI-TPEtgNKNLKKLRKKVSLVFQFPEAQLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 RlNVLQIIEEGLRvhqpTLSGAQREQQVKAV--MMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:PRK13641 101 N-TVLKDVEFGPK----NFGFSEDEAKEKALkwLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 456 LDKTVQAQILALLKSLQQK-HRLayIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:PRK13641 176 LDPEGRKEMMQLFKDYQKAgHTV--ILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
7-258 |
1.16e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 94.87 E-value: 1.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 7 AIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtpPAVYLSGDIRFHGESLlhaSEQTL 86
Cdd:PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL--PDDNPNSKITVDGITL---TAKTV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 87 RGVRgNKIAMIFQEP-------MVSLNPLHTLEKqlyevlslhrgmrREAARAEMIGCLDRVgirQASQRLRDY----PH 155
Cdd:PRK13640 80 WDIR-EKVGIVFQNPdnqfvgaTVGDDVAFGLEN-------------RAVPRPEMIKIVRDV---LADVGMLDYidsePA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSiVKKLADSVAVMQHGKC 235
Cdd:PRK13640 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EANMADQVLVLDDGKL 221
|
250 260 270
....*....|....*....|....*....|.
gi 804913277 236 VENQRADTLLSAPTH--------PYTQKLLN 258
Cdd:PRK13640 222 LAQGSPVEIFSKVEMlkeigldiPFVYKLKN 252
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
15-291 |
1.30e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 95.54 E-value: 1.30e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 15 FRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILR--LLPTppavylSGDIRFHGeslLHASEQTLRGVRgn 92
Cdd:COG4586 28 FRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKS-TTIKMLTgiLVPT------SGEVRVLG---YVPFKRRKEFAR-- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 93 KIAMIF---QEPMVSLNPLHTLE--KQLYEVlslhrgMRREAAR--AEMIGCLDrVGiRQASQRLRdyphQLSGGERQRV 165
Cdd:COG4586 96 RIGVVFgqrSQLWWDLPAIDSFRllKAIYRI------PDAEYKKrlDELVELLD-LG-ELLDTPVR----QLSLGQRMRC 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 166 MIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLL 245
Cdd:COG4586 164 ELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELK 243
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 804913277 246 SAPTHPYTQKLLNSEPTgDPVPLPAGqAPLLEVDKLRVAFPIRKGI 291
Cdd:COG4586 244 ERFGPYKTIVLELAEPV-PPLELPRG-GEVIEREGNRVRLEVDPRE 287
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-234 |
1.40e-21 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 93.03 E-value: 1.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvrpVVNAISLQVNAGeTLALVGESGSGKSvtalSILRLLPT--PPAvylSGDIRFHGESLLhASE 83
Cdd:cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKT----TLMRILATltPPS---SGTIRIDGQDVL-KQP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVrgnkIAMIFQEPMVSlnPLHTLEKQLYEVLSLHrGMRREAARAEMIGCLDRVGIrqaSQRLRDYPHQLSGGERQ 163
Cdd:cd03264 68 QKLRRR----IGYLPQEFGVY--PNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNL---GDRAKKKIGSLSGGMRR 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGK 206
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
13-247 |
1.42e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 93.70 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 13 VGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHASEQTLRgvrgN 92
Cdd:cd03252 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE-----NGRVLVDGHDLALADPAWLR----R 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 93 KIAMIFQEPMVslnplhtLEKQLYEVLSLHR---GMRREAARAEMIGCLD-----------RVGIRQASqrlrdyphqLS 158
Cdd:cd03252 77 QVGVVLQENVL-------FNRSIRDNIALADpgmSMERVIEAAKLAGAHDfiselpegydtIVGEQGAG---------LS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVEN 238
Cdd:cd03252 141 GGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQ 217
|
....*....
gi 804913277 239 QRADTLLSA 247
Cdd:cd03252 218 GSHDELLAE 226
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
305-508 |
1.51e-21 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 92.86 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP-------NSSLN 376
Cdd:cd03369 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEaEEGKIEIDGIDISTIPLEDL---RSSLTIIPQDPtlfsgtiRSNLD 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PrlnvlqiieeglrvhqptlSGAQREQQVKAVM--MEVGLDpetrhrypaeFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:cd03369 104 P-------------------FDEYSDEEIYGALrvSEGGLN----------LSQGQRQLLCLARALLKRPRVLVLDEATA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 804913277 455 SLDKTVQAQILALLKSLQQKHRLayIFISHDLHVVrALCHQVIVLRQGEVVEQG 508
Cdd:cd03369 155 SIDYATDALIQKTIREEFTNSTI--LTIAHRLRTI-IDYDKILVMDAGEVKEYD 205
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
307-519 |
1.76e-21 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 92.99 E-value: 1.76e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 307 FTLHPGETLGLVGESGSGKSTTGLALLRLI-RSEGRIVFDGQSLDTLNRR-QLLPVRHRIQVVFQdpnsslnprLNVLQI 384
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIpPAKGTVKVAGASPGKGWRHiGYVPQRHEFAWDFP---------ISVAHT 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 IEEGLRVHQPTL--SGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQA 462
Cdd:TIGR03771 72 VMSGRTGHIGWLrrPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQE 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 463 QILALLKSLQQKHrLAYIFISHDLHVVRALCHQViVLRQGEVVEQGqcervftAPQQ 519
Cdd:TIGR03771 151 LLTELFIELAGAG-TAILMTTHDLAQAMATCDRV-VLLNGRVIADG-------TPQQ 198
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
6-215 |
2.42e-21 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 97.57 E-value: 2.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVgfrQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvtalSILR----LLPtppavYLSGDIRFHgesllha 81
Cdd:COG4178 363 LALEDLTL---RTPDGRPLLEDLSLSLKPGERLLITGPSGSGKS----TLLRaiagLWP-----YGSGRIARP------- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 seqtlrgvRGNKIAMIFQEPMVslnPLHTLEKQLyevlsLHRGMRREAARAEMIGCLDRVGIRQASQRL---RDYPHQLS 158
Cdd:COG4178 424 --------AGARVLFLPQRPYL---PLGTLREAL-----LYPATAEAFSDAELREALEAVGLGHLAERLdeeADWDQVLS 487
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRElqRELNMGLLFITH 215
Cdd:COG4178 488 LGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLRE--ELPGTTVISVGH 542
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
305-505 |
2.74e-21 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 92.63 E-value: 2.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRL 379
Cdd:PRK10908 21 VTFHMRPGEMAFLTGHSGAGKST----LLKLIcgierPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 --NV-LQIIEEGLrvhqptlSGAQREQQVKAVMMEVGLDPETRHrYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:PRK10908 97 ydNVaIPLIIAGA-------SGDDIRRRVSAALDKVGLLDKAKN-FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 804913277 457 DKTVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:PRK10908 169 DDALSEGILRLFEEFNRVG-VTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
8-234 |
3.29e-21 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 91.55 E-value: 3.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRqqqHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTppavylSGDIRFHGEsllhaseQTL 86
Cdd:cd03226 2 IENISFSYK---KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIkES------SGSILLNGK-------PIK 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 87 RGVRGNKIAMIFQEPmvslnplhtlEKQLYE--VLS-LHRGMRREAARAEMIGC-LDRVGIRQASQRlrdYPHQLSGGER 162
Cdd:cd03226 66 AKERRKSIGYVMQDV----------DYQLFTdsVREeLLLGLKELDAGNEQAETvLKDLDLYALKER---HPLSLSGGQK 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLfITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03226 133 QRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV-ITHDYEFLAKVCDRVLLLANGA 203
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
6-236 |
3.46e-21 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 93.15 E-value: 3.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQqhvrPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLpTPpavyLSGDIRFHGESLLHASEQT 85
Cdd:PRK11231 3 LRTENLTVGYGTK----RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TP----QSGTVFLGDKPISMLSSRQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LrgvrGNKIAMIFQEPMVslnPLHTLEKQLYEV-----LSLHrGMRREAARAEMIGCLDRVGIRQ-ASQRLRDyphqLSG 159
Cdd:PRK11231 74 L----ARRLALLPQHHLT---PEGITVRELVAYgrspwLSLW-GRLSAEDNARVNQAMEQTRINHlADRRLTD----LSG 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElnmGLLFIT--HNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ---GKTVVTvlHDLNQASRYCDHLVVLANGHVM 217
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
4-215 |
3.56e-21 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 93.00 E-value: 3.56e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPpavyLSGDIRFHGESLLHASE 83
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKT-TLLNLIAGFLAP----SSGEITLDGVPVTGPGA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QtlRGVrgnkiamIFQEP--MVSLNPLHTLEkqlyevLSLH-RGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGG 160
Cdd:COG4525 77 D--RGV-------VFQKDalLPWLNVLDNVA------FGLRlRGVPKAERRARAEELLALVGLADFARR---RIWQLSGG 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITH 215
Cdd:COG4525 139 MRQRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITH 193
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
305-508 |
4.11e-21 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 91.57 E-value: 4.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRS-EGRIVFDGQSLDTLnrrqllpVRHRIQVVFQDpnSSLNPRLNVLQ 383
Cdd:cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPdSGEVLFDGKPLDIA-------ARNRIGYLPEE--RGLYPKMKVID 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIeeglrVHQPTLSGAQREQ---QVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTV 460
Cdd:cd03269 90 QL-----VYLAQLKGLKKEEarrRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 804913277 461 QAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03269 164 VELLKDVIRELARAGK-TVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
305-517 |
4.37e-21 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 95.29 E-value: 4.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQllpVRHRIQVVFQDpnSSLNPRL 379
Cdd:PRK09536 22 VDLSVREGSLVGLVGPNGAGKTT----LLRAINgtltpTAGTVLVAGDDVEALSARA---ASRRVASVPQD--TSLSFEF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPTLSGAQR--EQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK09536 93 DVRQVVEMGRTPHRSRFDTWTEtdRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYIFIsHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:PRK09536 172 INHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
28-237 |
4.94e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 93.31 E-value: 4.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSVTALSILRLL-PTPPAVYLsGDIRFHGESllhaSEQTLRGVRgNKIAMIFQEPmvsln 106
Cdd:PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLkPTTGTVTV-DDITITHKT----KDKYIRPVR-KRIGMVFQFP----- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 107 plhtlEKQLYEVlSLHR---------GMRREAARAEMIGCLDRVGIRQASQRLRdyPHQLSGGERQRVMIAMALLTRPEL 177
Cdd:PRK13646 95 -----ESQLFED-TVEReiifgpknfKMNLDEVKNYAHRLLMDLGFSRDVMSQS--PFQMSGGQMRKIAIVSILAMNPDI 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 178 LIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:PRK13646 167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
273-516 |
6.00e-21 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 92.07 E-value: 6.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRVAFPIRKGI---LKRVVDHNVVVNN--------ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR---- 337
Cdd:COG1134 2 SSMIEVENVSKSYRLYHEPsrsLKELLLRRRRTRReefwalkdVSFEVERGESVGIIGRNGAGKST----LLKLIAgile 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 338 -SEGRIVFDGqsldtlnrrqllpvrhRIqvvfqdpnSSLnprlnvlqiIEEGLRVHqPTLSGaqREQ-QVKAVMMevGLD 415
Cdd:COG1134 78 pTSGRVEVNG----------------RV--------SAL---------LELGAGFH-PELTG--RENiYLNGRLL--GLS 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 416 P-ETRHRYP--AEFSG--------------GQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlA 478
Cdd:COG1134 120 RkEIDEKFDeiVEFAElgdfidqpvktyssGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGR-T 198
|
250 260 270
....*....|....*....|....*....|....*...
gi 804913277 479 YIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTA 516
Cdd:COG1134 199 VIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIAA 236
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
5-246 |
7.21e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 92.46 E-value: 7.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVRPVvNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLLHASEQ 84
Cdd:PRK13642 4 ILEVENLVFKYEKESDVNQL-NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-----FEGKVKIDGELLTAENVW 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRgvrgNKIAMIFQEPMVSLNPLhTLEKQLYEVLSlHRGMRREaaraEMIGCLDR--VGIRQASQRLRDyPHQLSGGER 162
Cdd:PRK13642 78 NLR----RKIGMVFQNPDNQFVGA-TVEDDVAFGME-NQGIPRE----EMIKRVDEalLAVNMLDFKTRE-PARLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKlADSVAVMQHGKCVENQRAD 242
Cdd:PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPS 225
|
....
gi 804913277 243 TLLS 246
Cdd:PRK13642 226 ELFA 229
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
29-234 |
7.73e-21 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 91.08 E-value: 7.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 29 SLQVNAGETLALVGESGSGKSvTALSILRLLPTPpavyLSGDIRFHGESLLHASEQTlrgvrgNKIAMIFQEPmvSLNPL 108
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKS-TLLNLIAGFIEP----ASGSIKVNDQSHTGLAPYQ------RPVSMLFQEN--NLFAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 109 HTLEKQLyeVLSLHRGMRREAARAEMIGCLDR-VGIRQASQRLrdyPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187
Cdd:TIGR01277 85 LTVRQNI--GLGLHPGLKLNAEQQEKVVDAAQqVGIADYLDRL---PEQLSGGQRQRVALARCLVRPNPILLLDEPFSAL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 804913277 188 DVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:TIGR01277 160 DPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
22-234 |
8.61e-21 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 91.03 E-value: 8.61e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGESLlhaseQTLRGVRGNKIAMIFQ 99
Cdd:cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKT-TTLKMLtgELRPT------SGTAYINGYSI-----RTDRKAARQSLGYCPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 100 EPMvsLNPLHTLEKQLYeVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLrdyPHQLSGGERQRVMIAMALLTRPELLI 179
Cdd:cd03263 83 FDA--LFDELTVREHLR-FYARLKGLPKSEIKEEVELLLRVLGLTDKANKR---ARTLSGGMKRKLSLAIALIGGPSVLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQRELNMglLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03263 157 LDEPTSGLDPASRRAIWDLILEVRKGRSI--ILTTHSMDEAEALCDRIAIMSDGK 209
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
8-234 |
1.04e-20 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 91.24 E-value: 1.04e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTLR 87
Cdd:cd03267 20 IGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKT-TTLKILSGLLQPT----SGEVRVAGLVPWKRRKKFLR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 gvrgnKIAMIF-QEPMVS--LNPLHTLE--KQLYEVLSLHRGMRREAArAEMIGCldrvgirqasQRLRDYP-HQLSGGE 161
Cdd:cd03267 95 -----RIGVVFgQKTQLWwdLPVIDSFYllAAIYDLPPARFKKRLDEL-SELLDL----------EELLDTPvRQLSLGQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03267 159 RMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
22-247 |
1.06e-20 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 95.66 E-value: 1.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGESLLHASEQTLRGVrgnkIAM 96
Cdd:COG5265 371 RPILKGVSFEVPAGKTVAIVGPSGAGKS----TLARLLfrfydVT------SGRILIDGQDIRDVTQASLRAA----IGI 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 97 IFQEPmVSLN-----------PLHTLEkqlyEVlslhrgmrREAARA----EMIGCL-----DRVGIRQasqrLRdyphq 156
Cdd:COG5265 437 VPQDT-VLFNdtiayniaygrPDASEE----EV--------EAAARAaqihDFIESLpdgydTRVGERG----LK----- 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLS-IVKklADSVAVMQHGKC 235
Cdd:COG5265 495 LSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVAR--GRTTLVIAHRLStIVD--ADEILVLEAGRI 570
|
250
....*....|..
gi 804913277 236 VENQRADTLLSA 247
Cdd:COG5265 571 VERGTHAELLAQ 582
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
4-217 |
1.16e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 95.12 E-value: 1.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQQQhvrPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLLHASE 83
Cdd:TIGR02868 333 PTLELRDLSAGYPGAP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP-----LQGEVTLDGVPVSSLDQ 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVrgnkIAMIFQEPmvslnplHTLEKQLYEVLSLHRGmrrEAARAEMIGCLDRVGIRQASQRLRDYPH-------- 155
Cdd:TIGR02868 405 DEVRRR----VSVCAQDA-------HLFDTTVRENLRLARP---DATDEELWAALERVGLADWLRALPDGLDtvlgegga 470
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELnmGLLFITHNL 217
Cdd:TIGR02868 471 RLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGR--TVVLITHHL 530
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-254 |
1.23e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 91.77 E-value: 1.23e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGFRQQQHVRPVvnaiSLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLlHA 81
Cdd:PRK14243 7 TETVLRTENLNVYYGSFLAVKNV----WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL-YA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRGVRgNKIAMIFQEPmvslNPLhtlEKQLYEVLSLhrGMRREAARAEMIGCLDRvGIRQAS------QRLRDYPH 155
Cdd:PRK14243 82 PDVDPVEVR-RRIGMVFQKP----NPF---PKSIYDNIAY--GARINGYKGDMDELVER-SLRQAAlwdevkDKLKQSGL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNmgLLFITHNLSIVKKLADSVAVM----- 230
Cdd:PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT--IIIVTHNMQQAARVSDMTAFFnvelt 228
|
250 260
....*....|....*....|....*...
gi 804913277 231 ----QHGKCVENQRADTLLSAPTHPYTQ 254
Cdd:PRK14243 229 egggRYGYLVEFDRTEKIFNSPQQQATR 256
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
312-504 |
1.39e-20 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 91.28 E-value: 1.39e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 312 GETLGLVGESGSGKSTtglaLLRLIrsegrivfdgQSLDTLNRRQLLP-------VRHRIQVVFQDpnSSLNPRLNVLQI 384
Cdd:PRK11247 38 GQFVAVVGRSGCGKST----LLRLL----------AGLETPSAGELLAgtaplaeAREDTRLMFQD--ARLLPWKKVIDN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 IEEGLRvhqptlsGAQREQQVKAvMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQI 464
Cdd:PRK11247 102 VGLGLK-------GQWRDAALQA-LAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 804913277 465 LALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:PRK11247 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
8-234 |
1.43e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 91.35 E-value: 1.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLlptppAVYLSGDIRFHGESLlhaSEQTLR 87
Cdd:PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI-----EKVKSGEIFYNNQAI---TDDNFE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRgNKIAMIFQEP-------MVSLNPLHTLEKQLYEvlslHRGMRREAARA-EMIGCLDRvgirqasqrlRDY-PHQLS 158
Cdd:PRK13648 80 KLR-KHIGIVFQNPdnqfvgsIVKYDVAFGLENHAVP----YDEMHRRVSEAlKQVDMLER----------ADYePNALS 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKlADSVAVMQHGK 234
Cdd:PRK13648 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGT 219
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
23-505 |
1.50e-20 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 94.47 E-value: 1.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNA---ISLQVNAGETLALVGESGSGKSvTALSILRllptppAVY----LSGDIRFHGE----SLLHASEQtlrgvRG 91
Cdd:NF040905 12 PGVKAlddVNLSVREGEIHALCGENGAGKS-TLMKVLS------GVYphgsYEGEILFDGEvcrfKDIRDSEA-----LG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 92 nkIAMIFQE----PMVSL--NPLHTLEKQLYEVLSLHRGMRREAaraEMigcLDRVGirqasqrLRDYPHQLSG----GE 161
Cdd:NF040905 80 --IVIIHQElaliPYLSIaeNIFLGNERAKRGVIDWNETNRRAR---EL---LAKVG-------LDESPDTLVTdigvGK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENqra 241
Cdd:NF040905 145 QQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDGRTIET--- 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 242 dtlLSAPTHPYTQ----------KLLNSEPTGDPvplPAGQaPLLEVDKLRVAFPI---RKgILKRvvdhnvvvnnISFT 308
Cdd:NF040905 221 ---LDCRADEVTEdriirgmvgrDLEDRYPERTP---KIGE-VVFEVKNWTVYHPLhpeRK-VVDD----------VSLN 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 309 LHPGETLGLVGESGSGKstTGLALLRLIRSEGR-----IVFDGQSLDTLNRRQllPVRHRIQVVFQDpnsslnpR----L 379
Cdd:NF040905 283 VRRGEIVGIAGLMGAGR--TELAMSVFGRSYGRnisgtVFKDGKEVDVSTVSD--AIDAGLAYVTED-------RkgygL 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGlrVHQPTLSG--------AQREQQV----------KA--VMMEVGldpetrhrypaEFSGGQRQRIAVARA 439
Cdd:NF040905 352 NLIDDIKRN--ITLANLGKvsrrgvidENEEIKVaeeyrkkmniKTpsVFQKVG-----------NLSGGNQQKVVLSKW 418
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 440 LILKPSLIILDEPTSSLDKTVQAQILALLKSL--QQKhrlAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:NF040905 419 LFTDPDVLILDEPTRGIDVGAKYEIYTIINELaaEGK---GVIVISSELPELLGMCDRIYVMNEGRIT 483
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
305-514 |
1.60e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 91.72 E-value: 1.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRI-VFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRlNVL 382
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQpTEGKVtVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEE-TVL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 383 QIIEEGlrvhqPTLSGAQREQ--QVKAVMME-VGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:PRK13643 104 KDVAFG-----PQNFGIPKEKaeKIAAEKLEmVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 460 VQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVF 514
Cdd:PRK13643 179 ARIEMMQLFESIHQSGQ-TVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
6-234 |
1.62e-20 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 91.28 E-value: 1.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSvgfrQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGESLLHASEQT 85
Cdd:PRK11247 13 LLLNAVS----KRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKS-TLLRLLAGLETPSA----GELLAGTAPLAEAREDT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 lrgvrgnkiAMIFQEpmVSLNPLhtleKQLYEVLSLH-RGMRREAARAemigCLDRVGIrqaSQRLRDYPHQLSGGERQR 164
Cdd:PRK11247 84 ---------RLMFQD--ARLLPW----KKVIDNVGLGlKGQWRDAALQ----ALAAVGL---ADRANEWPAALSGGQKQR 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-234 |
1.66e-20 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 93.09 E-value: 1.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHG 75
Cdd:PRK09452 10 SLSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKT----TVLRLIagfetPD------SGRIMLDG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 76 ESLLHAS-EQtlRGVRgnkiaMIFQEpmVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMiGCLDRVGIRQASQRlrdYP 154
Cdd:PRK09452 76 QDITHVPaEN--RHVN-----TVFQS--YALFPHMTVFENVAFGLRMQKTPAAEITPRVM-EALRMVQLEEFAQR---KP 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK09452 143 HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-236 |
1.68e-20 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 90.12 E-value: 1.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGESLLHASEQ 84
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKT-TTLRMLAGLLEPDA----GFATVDGFDVVKEPAE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLR--GVRGNKIAmifqepmvsLNPLHTLEKQLYEVLSLHrGMRREAARAEMIGCLDRVGIRQasqrLRDYP-HQLSGGE 161
Cdd:cd03266 76 ARRrlGFVSDSTG---------LYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGMEE----LLDRRvGGFSTGM 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:cd03266 142 RQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
305-509 |
1.73e-20 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 94.89 E-value: 1.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSLn 376
Cdd:PRK11160 359 LSLQIKAGEKVALLGRTGCGKST----LLQLLTrawdpQQGEILLNGQPIADYSEAAL---RQAISVVSQRVhlfSATL- 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 prlnvlqiiEEGLRVHQPTLSgaqrEQQVKAVMMEVGLDP--ETRHRYPA-------EFSGGQRQRIAVARALILKPSLI 447
Cdd:PRK11160 431 ---------RDNLLLAAPNAS----DEALIEVLQQVGLEKllEDDKGLNAwlgeggrQLSGGEQRRLGIARALLHDAPLL 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 448 ILDEPTSSLDKTVQAQILALLKSLQQKHRLayIFISHDLhvvRALCH--QVIVLRQGEVVEQGQ 509
Cdd:PRK11160 498 LLDEPTEGLDAETERQILELLAEHAQNKTV--LMITHRL---TGLEQfdRICVMDNGQIIEQGT 556
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
6-215 |
1.74e-20 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 89.85 E-value: 1.74e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVgfrqQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALS-ILRLLPtpPAVYLSGDIRFHGESLLH-ASE 83
Cdd:COG4136 2 LSLENLTI----TLGGRPLLAPLSLTVAPGEILTLMGPSGSGKS-TLLAaIAGTLS--PAFSASGEVLLNGRRLTAlPAE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QtlrgvrgNKIAMIFQEPMvsLNPLHTLEKQLyeVLSLHRGMRREAARAEMIGCLDRVGIrqASQRLRDyPHQLSGGERQ 163
Cdd:COG4136 75 Q-------RRIGILFQDDL--LFPHLSVGENL--AFALPPTIGRAQRRARVEQALEEAGL--AGFADRD-PATLSGGQRA 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITH 215
Cdd:COG4136 141 RVALLRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTH 192
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
274-522 |
1.91e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 90.61 E-value: 1.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 274 PLLEVDKLRVAFPIRKGIlkrvvdhnvvvNNISFTLHPGETLGLVGESGSGKSTTGLALLRL------IRSEGRIVFDGQ 347
Cdd:PRK14239 4 PILQVSDLSVYYNKKKAL-----------NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndlnpeVTITGSIVYNGH 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 348 SLDTlNRRQLLPVRHRIQVVFQDPNSSlnPrLNVLQIIEEGLRVH------------QPTLSGAQREQQVKAVMMEVGLD 415
Cdd:PRK14239 73 NIYS-PRTDTVDLRKEIGMVFQQPNPF--P-MSIYENVVYGLRLKgikdkqvldeavEKSLKGASIWDEVKDRLHDSALG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 416 petrhrypaeFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLayIFISHDLHVVRALCHQ 495
Cdd:PRK14239 149 ----------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTM--LLVTRSMQQASRISDR 216
|
250 260
....*....|....*....|....*..
gi 804913277 496 VIVLRQGEVVEQGQCERVFTAPQQAYT 522
Cdd:PRK14239 217 TGFFLDGDLIEYNDTKQMFMNPKHKET 243
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
4-249 |
2.22e-20 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 93.37 E-value: 2.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQQqhvrPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGESLLHASE 83
Cdd:PRK09536 2 PMIDVSDLSVEFGDT----TVLDGVDLSVREGSLVGLVGPNGAGKT-TLLRAINGTLTPTA----GTVLVAGDDVEALSA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLrgvrGNKIAMIFQEPMVSLNplHTLEKQLYEVLSLHRG---MRREAARAEMIGCLDRVGIRQASQRLRDyphQLSGG 160
Cdd:PRK09536 73 RAA----SRRVASVPQDTSLSFE--FDVRQVVEMGRTPHRSrfdTWTETDRAAVERAMERTGVAQFADRPVT---SLSGG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFItHNLSIVKKLADSVAVMQHGKCVENQR 240
Cdd:PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRAAGP 222
|
....*....
gi 804913277 241 ADTLLSAPT 249
Cdd:PRK09536 223 PADVLTADT 231
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
305-527 |
2.94e-20 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 89.51 E-value: 2.94e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTL--NRRqllpVRHRIQVVFQdpNSSLNP 377
Cdd:TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTT----LLKTLmgllpVKSGSIRLDGEDITKLppHER----ARAGIAYVPQ--GREIFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 RLNVLQIIEEGLRVHqptlsgAQREQQVKAVMMEvgLDP---ETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:TIGR03410 89 RLTVEENLLTGLAAL------PRRSRKIPDEIYE--LFPvlkEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 455 SLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVftapQQAYTRQLLA 527
Cdd:TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL----DEDKVRRYLA 229
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
305-521 |
3.47e-20 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 90.23 E-value: 3.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLlpVRHRIQVVFQDPNSSlnpRL 379
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKST----LLKMLgrhqpPSEGEILLDAQPLESWSSKAF--ARKVAYLPQQLPAAE---GM 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPTLS--GAQREQQVKAVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK10575 101 TVRELVAIGRYPWHGALGrfGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP--QQAY 521
Cdd:PRK10575 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGEtlEQIY 245
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
28-234 |
4.01e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 90.85 E-value: 4.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvTALSILR--LLPTppavylSGDIRFhGESLLHA--SEQTLRGVRgNKIAMIFQEPmv 103
Cdd:PRK13634 26 VNVSIPSGSYVAIIGHTGSGKS-TLLQHLNglLQPT------SGTVTI-GERVITAgkKNKKLKPLR-KKVGIVFQFP-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 104 slnplhtlEKQLYE--VLS------LHRGMRREAARAEMIGCLDRVGIrqaSQRLRDY-PHQLSGGERQRVMIAMALLTR 174
Cdd:PRK13634 95 --------EHQLFEetVEKdicfgpMNFGVSEEDAKQKAREMIELVGL---PEELLARsPFELSGGQMRRVAIAGVLAME 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 175 PELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK13634 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
305-514 |
4.14e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 90.57 E-value: 4.14e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTgLALLR--LIRSEGRIVFDGQSLDTLNR-RQLLPVRHRIQVVFQDPNSSLNPRlNV 381
Cdd:PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTI-MQLLNglHVPTQGSVRVDDTLITSTSKnKDIKQIRKKVGLVFQFPESQLFEE-TV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 382 LQIIEEGlrvhqPTLSGAQREQQVKAV---MMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDK 458
Cdd:PRK13649 104 LKDVAFG-----PQNFGVSQEEAEALArekLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 459 TVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVF 514
Cdd:PRK13649 179 KGRKELMTLFKKLHQSG-MTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
272-502 |
4.40e-20 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 93.72 E-value: 4.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 272 QAPLLEVDKLRVAFPIRKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVF-D 345
Cdd:COG4178 359 EDGALALEDLTLRTPDGRPLLE----------DLSLSLKPGERLLITGPSGSGKST----LLRAIaglwpYGSGRIARpA 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 346 GQS-----------LDTLnRRQLLPvrhriqvvfqdpnsslnprlnvlqiieeglrvhqPTLSGAQREQQVKAVMMEVGL 414
Cdd:COG4178 425 GARvlflpqrpylpLGTL-REALLY----------------------------------PATAEAFSDAELREALEAVGL 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 415 DP-----ETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKslQQKHRLAYIFISHDlHVV 489
Cdd:COG4178 470 GHlaerlDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLLR--EELPGTTVISVGHR-STL 546
|
250
....*....|...
gi 804913277 490 RALCHQVIVLRQG 502
Cdd:COG4178 547 AAFHDRVLELTGD 559
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
305-508 |
4.44e-20 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 93.63 E-value: 4.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPnsslnprlnVL- 382
Cdd:TIGR02203 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEpDSGQILLDGHDLADYTLASL---RRQVALVSQDV---------VLf 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 383 -QIIEEGLRVHQPtlSGAQREQQVKAVMMEVGLD-----PETRHRYPAE----FSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:TIGR02203 419 nDTIANNIAYGRT--EQADRAEIERALAAAYAQDfvdklPLGLDTPIGEngvlLSGGQRQRLAIARALLKDAPILILDEA 496
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 453 TSSLDKTVQAQILALLKSLQQKHrlAYIFISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:TIGR02203 497 TSALDNESERLVQAALERLMQGR--TTLVIAHRLSTIEK-ADRIVVMDDGRIVERG 549
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
10-236 |
5.78e-20 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 87.99 E-value: 5.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 10 NLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLlptpPAVYLSGDIRFHGESLlhaSEQTLR 87
Cdd:cd03213 10 TVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKS-TLLNALagRR----TGLGVSGEVLINGRPL---DKRSFR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GvrgnKIAMIFQEPMvslnplhtlekqLYEVLSLHRGMRREAaraemigcldrvgirqasqRLRdyphQLSGGERQRVMI 167
Cdd:cd03213 82 K----IIGYVPQDDI------------LHPTLTVRETLMFAA-------------------KLR----GLSGGERKRVSI 122
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 168 AMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSI-VKKLADSVAVMQHGKCV 236
Cdd:cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-ADTGRTIICSIHQPSSeIFELFDKLLLLSQGRVI 191
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-234 |
6.15e-20 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 87.49 E-value: 6.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGfrqqqhvrPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtppavYLSGDIRFHGESLLHASe 83
Cdd:cd03215 3 PVLEVRGLSVK--------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTRRS- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 qtLRGVRGNKIAMIFQEPMVS-LNPLHTLekqlYEVLSLhrgmrreaaraemigcldrvgirqasqrlrdyPHQLSGGER 162
Cdd:cd03215 69 --PRDAIRAGIAYVPEDRKREgLVLDLSV----AENIAL--------------------------------SSLLSGGNQ 110
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03215 111 QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGR 181
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
305-517 |
6.44e-20 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 93.24 E-value: 6.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLnrrQLLPVRHRIQVVFQDP-------- 371
Cdd:PRK10789 334 VNFTLKPGQMLGICGPTGSGKST----LLSLIQrhfdvSEGDIRFHDIPLTKL---QLDSWRSRLAVVSQTPflfsdtva 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 372 -NSSLNPRLNVLQIIEEGLR---VHQPTL---SGAQREQQVKAVMMevgldpetrhrypaefSGGQRQRIAVARALILKP 444
Cdd:PRK10789 407 nNIALGRPDATQQEIEHVARlasVHDDILrlpQGYDTEVGERGVML----------------SGGQKQRISIARALLLNA 470
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 445 SLIILDEPTSSLDKTVQAQIlalLKSLQQKHRLAYIFIShdLHVVRAL--CHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:PRK10789 471 EILILDDALSAVDGRTEHQI---LHNLRQWGEGRTVIIS--AHRLSALteASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
28-233 |
7.63e-20 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 88.68 E-value: 7.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHAseqtlrgvrGNKIAMIFQEpmVSLNP 107
Cdd:TIGR01184 4 VNLTIQQGEFISLIGHSGCGKS-TLLNLISGLAQPT----SGGVILEGKQITEP---------GPDRMVVFQN--YSLLP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 108 LHTLEKQLY-EVLSLHRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQRVMIAMALLTRPELLIADEPTTA 186
Cdd:TIGR01184 68 WLTVRENIAlAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK---RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 804913277 187 LDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHG 233
Cdd:TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
305-508 |
8.59e-20 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 92.88 E-value: 8.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP----NSSLNprl 379
Cdd:TIGR01193 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARsGEILLNGFSLKDIDRHTL---RQFINYLPQEPyifsGSILE--- 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGlrVHQPTLSGAQREQQVKAVM--MEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:TIGR01193 567 NLLLGAKEN--VSQDEIWAACEIAEIKDDIenMPLGYQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 804913277 458 KTVQAQILALLKSLQQKhrlAYIFISHDLHVVRaLCHQVIVLRQGEVVEQG 508
Cdd:TIGR01193 644 TITEKKIVNNLLNLQDK---TIIFVAHRLSVAK-QSDKIIVLDHGKIIEQG 690
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
305-508 |
9.59e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 89.78 E-value: 9.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQL--LP-VRhriqvvfqdpnsSLNPRLN 380
Cdd:COG4152 20 VSFTVPKGEIFGLLGPNGAGKTTTIRIILGILApDSGEVLWDGEPLDPEDRRRIgyLPeER------------GLYPKMK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLdPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDkTV 460
Cdd:COG4152 88 VGEQLVYLARLKG--LSKAEAKRRADEWLERLGL-GDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFSGLD-PV 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 804913277 461 QAQILA-LLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:COG4152 164 NVELLKdVIRELAAKGT-TVIFSSHQMELVEELCDRIVIINKGRKVLSG 211
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
259-486 |
9.74e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 92.42 E-value: 9.74e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 259 SEPTGDPVPLPAGQAPLLEVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLI-R 337
Cdd:TIGR02868 308 VEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLdP 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 338 SEGRIVFDGQSLDTLNRRQllpVRHRIQVVFQDPN---SSlnprlnvlqiIEEGLRVHQPTLSgaqrEQQVKAVMMEVGL 414
Cdd:TIGR02868 388 LQGEVTLDGVPVSSLDQDE---VRRRVSVCAQDAHlfdTT----------VRENLRLARPDAT----DEELWAALERVGL 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 415 DPETR----------HRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLksLQQKHRLAYIFISH 484
Cdd:TIGR02868 451 ADWLRalpdgldtvlGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITH 528
|
..
gi 804913277 485 DL 486
Cdd:TIGR02868 529 HL 530
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
24-248 |
1.15e-19 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 90.55 E-value: 1.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 24 VVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGESLLHASEQTlrgvrgNKIAMIF 98
Cdd:PRK11432 21 VIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVaglekPT------EGQIFIDGEDVTHRSIQQ------RDICMVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 99 QE----PMVSL--NPLHTLEKQlyEVLSLHRGMR-REA-ARAEMIGCLDRvgirqasqrlrdYPHQLSGGERQRVMIAMA 170
Cdd:PRK11432 85 QSyalfPHMSLgeNVGYGLKML--GVPKEERKQRvKEAlELVDLAGFEDR------------YVDQISGGQQQRVALARA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 171 LLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAP 248
Cdd:PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
6-237 |
1.35e-19 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 87.08 E-value: 1.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVgfRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHASEQT 85
Cdd:cd03369 7 IEVENLSV--RYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE-----EGKIEIDGIDISTIPLED 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRgvrgNKIAMIFQEPMV-------SLNPL-HTLEKQLYEVLSLHRGmrreaaraemigcldrvgirqasqrlrdyPHQL 157
Cdd:cd03369 80 LR----SSLTIIPQDPTLfsgtirsNLDPFdEYSDEEIYGALRVSEG-----------------------------GLNL 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKLaDSVAVMQHGKCVE 237
Cdd:cd03369 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAHRLRTIIDY-DKILVMDAGEVKE 203
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
6-237 |
1.56e-19 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 87.82 E-value: 1.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGfrqqqhV--RPVVNAISLQVNAGETLALVGESGSGKSVTALSIL---RLLPTppavylSGDIRFHGESLLH 80
Cdd:COG0396 1 LEIKNLHVS------VegKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMghpKYEVT------SGSILLDGEDILE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 AS--EQTLRGvrgnkIAMIFQEPM----VSL-NPLHT-LEKQLYEVLSLhrgmrrEAARAEMIGCLDRVGIRQasqrlrD 152
Cdd:COG0396 69 LSpdERARAG-----IFLAFQYPVeipgVSVsNFLRTaLNARRGEELSA------REFLKLLKEKMKELGLDE------D 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 153 YPHQ-----LSGGERQRVMIA-MALLtRPELLIADEPTTALDVSVqAQILS-LLRELQRElNMGLLFITHN---LSIVKk 222
Cdd:COG0396 132 FLDRyvnegFSGGEKKRNEILqMLLL-EPKLAILDETDSGLDIDA-LRIVAeGVNKLRSP-DRGILIITHYqriLDYIK- 207
|
250
....*....|....*
gi 804913277 223 lADSVAVMQHGKCVE 237
Cdd:COG0396 208 -PDFVHVLVDGRIVK 221
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
6-237 |
1.59e-19 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 86.81 E-value: 1.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAVylSGDIRFHGESLLHAS--E 83
Cdd:cd03217 1 LEIKDLHVSVGG----KEILKGVNLTIKKGEVHALMGPNGSGKS-TLAKTIMGHPKYEVT--EGEILFKGEDITDLPpeE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGvrgnkIAMIFQEPM----VSLNPLhtlekqlyevlslhrgmrreaaraemigcldrvgirqasqrLRDYPHQLSG 159
Cdd:cd03217 74 RARLG-----IFLAFQYPPeipgVKNADF-----------------------------------------LRYVNEGFSG 107
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKL-ADSVAVMQHGKCVE 237
Cdd:cd03217 108 GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVK 185
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
22-249 |
1.95e-19 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 92.09 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTPPAVYLSG-DIRFHGESLLHaseqtlrgvrgNKIAMIFQ 99
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYqPTGGQVLLDGvPLVQYDHHYLH-----------RQVALVGQ 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 100 EPM-----VSLNPLHTLEKQlyevlslhrGMRREAARAEMIGCLDRVGIRQASQRLRDYPH--QLSGGERQRVMIAMALL 172
Cdd:TIGR00958 563 EPVlfsgsVRENIAYGLTDT---------PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKgsQLSGGQKQRIAIARALV 633
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 173 TRPELLIADEPTTALDVSVQAqilsLLRELQRELNMGLLFITHNLSIVKKlADSVAVMQHGKCVENQRADTLLSAPT 249
Cdd:TIGR00958 634 RKPRVLILDEATSALDAECEQ----LLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQG 705
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
254-516 |
2.41e-19 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 91.26 E-value: 2.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 254 QKLLNSEPTGDP-VPLPAGQAPLlEVDKLRVAFPI-RKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTtgla 331
Cdd:TIGR01842 295 NELLANYPSRDPaMPLPEPEGHL-SVENVTIVPPGgKKPTLR----------GISFSLQAGEALAIIGPSGSGKST---- 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 332 LLRLI-----RSEGRIVFDGQSLDTLNRRQL------LP---------VRHRIQVVFQDPNSSlnprlnvlQIIEEGlrv 391
Cdd:TIGR01842 360 LARLIvgiwpPTSGSVRLDGADLKQWDRETFgkhigyLPqdvelfpgtVAENIARFGENADPE--------KIIEAA--- 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 392 hqpTLSGAQR-----EQQVKAVMMEVGldpetrhrypAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILA 466
Cdd:TIGR01842 429 ---KLAGVHElilrlPDGYDTVIGPGG----------ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 804913277 467 LLKSLQQKHRLAyIFISHDLHVVrALCHQVIVLRQGEVVEQGQCERVFTA 516
Cdd:TIGR01842 496 AIKALKARGITV-VVITHRPSLL-GCVDKILVLQDGRIARFGERDEVLAK 543
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
8-245 |
2.75e-19 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 91.23 E-value: 2.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLlhaSEQTLR 87
Cdd:PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID-----EGEILLDGHDL---RDYTLA 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRgNKIAMIFQEpmVSL------NPLHTLEKQLYEvlslhRGMRREAARA----EMIGCLDR-----VGIRQASqrlrd 152
Cdd:PRK11176 414 SLR-NQVALVSQN--VHLfndtiaNNIAYARTEQYS-----REQIEEAARMayamDFINKMDNgldtvIGENGVL----- 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 153 yphqLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQH 232
Cdd:PRK11176 481 ----LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEK-ADEILVVED 553
|
250
....*....|...
gi 804913277 233 GKCVENQRADTLL 245
Cdd:PRK11176 554 GEIVERGTHAELL 566
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
318-524 |
3.17e-19 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 87.53 E-value: 3.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 318 VGESGSGKSTtglaLLR-------LI---RSEGRIVFDGQSLdtlNRRQLLP--VRHRIQVVFQDPNS---------SLN 376
Cdd:PRK14243 42 IGPSGCGKST----ILRcfnrlndLIpgfRVEGKVTFHGKNL---YAPDVDPveVRRRIGMVFQKPNPfpksiydniAYG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLQ-----IIEEGLRvhQPTLSgaqreQQVKAVMMEVGLdpetrhrypaEFSGGQRQRIAVARALILKPSLIILDE 451
Cdd:PRK14243 115 ARINGYKgdmdeLVERSLR--QAALW-----DEVKDKLKQSGL----------SLSGGQQQRLCIARAIAVQPEVILMDE 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 452 PTSSLDKTVQAQILALLKSLQQKHRLayIFISHDLHVVRALCHQVIVL---------RQGEVVEQGQCERVFTAPQQAYT 522
Cdd:PRK14243 178 PCSALDPISTLRIEELMHELKEQYTI--IIVTHNMQQAARVSDMTAFFnveltegggRYGYLVEFDRTEKIFNSPQQQAT 255
|
..
gi 804913277 523 RQ 524
Cdd:PRK14243 256 RD 257
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
305-509 |
3.30e-19 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 89.32 E-value: 3.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNrrqllPVRHRIQVVFQdpNSSLNPRL 379
Cdd:PRK11000 22 INLDIHEGEFVVFVGPSGCGKST----LLRMIAglediTSGDLFIGEKRMNDVP-----PAERGVGMVFQ--SYALYPHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRvhqptLSGA---QREQQVKAVMMEVGLDpetrH---RYPAEFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:PRK11000 91 SVAENMSFGLK-----LAGAkkeEINQRVNQVAEVLQLA----HlldRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 454 SSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQ 509
Cdd:PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
22-242 |
4.39e-19 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 86.08 E-value: 4.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGESLLHASEQTLRGVRgNKIAMIFQEP 101
Cdd:PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKS-TLLKLICGIERPSA----GKIWFSGHDITRLKNREVPFLR-RQIGMIFQDH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 102 MVslnplhTLEKQLYEVLSLH---RGMRREAARAEMIGCLDRVGIRQasqRLRDYPHQLSGGERQRVMIAMALLTRPELL 178
Cdd:PRK10908 89 HL------LMDRTVYDNVAIPliiAGASGDDIRRRVSAALDKVGLLD---KAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 179 IADEPTTALDVSVQAQILSLLRELQReLNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRAD 242
Cdd:PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVGGE 222
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
319-518 |
4.47e-19 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 88.78 E-value: 4.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 319 GESGSGKSTTGLALLRLIR-SEGRIVFDGQSL-DTLNRRQLLPVRHRIQVVFQDpnSSLNPRLNVLQIIEEGLRvhqptl 396
Cdd:PRK11144 31 GRSGAGKTSLINAISGLTRpQKGRIVLNGRVLfDAEKGICLPPEKRRIGYVFQD--ARLFPHYKVRGNLRYGMA------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 397 sgAQREQQVKAVMMEVGLDPETRhRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHR 476
Cdd:PRK11144 103 --KSMVAQFDKIVALLGIEPLLD-RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 804913277 477 LAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:PRK11144 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
6-237 |
4.64e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 84.67 E-value: 4.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRllptppavylsGDIR-FHGESLLHASE- 83
Cdd:cd03247 1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKS-TLLQLLT-----------GDLKpQQGEITLDGVPv 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVRGNKIAMIFQEPmvslnplHTLEKQLYEvlslhrgmrreaaraemigcldRVGIRqasqrlrdyphqLSGGERQ 163
Cdd:cd03247 67 SDLEKALSSLISVLNQRP-------YLFDTTLRN----------------------NLGRR------------FSGGERQ 105
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVE 237
Cdd:cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITHHLTGIEH-MDKILFLENGKIIM 176
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
305-508 |
6.29e-19 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 90.08 E-value: 6.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLdtlNRRQLLPVRHRIQVVFQdpnsslNPRL---- 379
Cdd:PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDiDEGEILLDGHDL---RDYTLASLRNQVALVSQ------NVHLfndt 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 ---NVLQIIEEglrvhqpTLSGAQREQQVKA--VM-----MEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIIL 449
Cdd:PRK11176 433 ianNIAYARTE-------QYSREQIEEAARMayAMdfinkMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILIL 504
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 450 DEPTSSLDKTVQAQILALLKSLqQKHRLAYIfISHDLHVVRAlCHQVIVLRQGEVVEQG 508
Cdd:PRK11176 505 DEATSALDTESERAIQAALDEL-QKNRTSLV-IAHRLSTIEK-ADEILVVEDGEIVERG 560
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-234 |
7.66e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 86.29 E-value: 7.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGF-RQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHGESLLHAS 82
Cdd:COG1101 2 LELKNLSKTFnPGTVNEKRALDGLNLTIEEGDFVTVIGSNGAGKS-TLLNAIagSLPPD------SGSILIDGKDVTKLP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQtlrgVRGNKIAMIFQEPMVSLNPLHTLEKQLyeVLSLHRGMRREAARAEMIGCLDRVGIRQAS------QRLRDYPHQ 156
Cdd:COG1101 75 EY----KRAKYIGRVFQDPMMGTAPSMTIEENL--ALAYRRGKRRGLRRGLTKKRRELFRELLATlglgleNRLDTKVGL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:COG1101 149 LSGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGR 226
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
305-508 |
7.90e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 84.29 E-value: 7.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRqllpVRHRIQVVFQDP---NSSLn 376
Cdd:cd03247 21 LSLELKQGEKIALLGRSGSGKST----LLQLLTgdlkpQQGEITLDGVPVSDLEKA----LSSLISVLNQRPylfDTTL- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 pRLNVlqiieeGLRvhqptlsgaqreqqvkavmmevgldpetrhrypaeFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:cd03247 92 -RNNL------GRR-----------------------------------FSGGERQRLALARILLQDAPIVLLDEPTVGL 129
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 457 DKTVQAQILALLKSLQQKHRLayIFISHDLHVVRALcHQVIVLRQGEVVEQG 508
Cdd:cd03247 130 DPITERQLLSLIFEVLKDKTL--IWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
305-526 |
9.19e-19 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 86.36 E-value: 9.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRSE-----GRIVFDGQSLDTLNRRQLLPVRHRIQVVFQdpNSSLNPRL 379
Cdd:PRK11831 26 ISLTVPRGKITAIMGPSGIGKTT----LLRLIGGQiapdhGEILFDGENIPAMSRSRLYTVRKRMSMLFQ--SGALFTDM 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVH----QPTLSgaqreqqvKAVMME---VGLDPETrHRYPAEFSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:PRK11831 100 NVFDNVAYPLREHtqlpAPLLH--------STVMMKleaVGLRGAA-KLMPSELSGGMARRAALARAIALEPDLIMFDEP 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 453 TSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVfTAPQQAYTRQLL 526
Cdd:PRK11831 171 FVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL-QANPDPRVRQFL 243
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
305-517 |
9.75e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 87.21 E-value: 9.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTT------------GLALLRLIRSEGRIVFDGQSLDTLNRR--QLLPVRHRIQVVFQD 370
Cdd:PRK13631 45 ISYTFEKNKIYFIIGNSGSGKSTLvthfnglikskyGTIQVGDIYIGDKKNNHELITNPYSKKikNFKELRRRVSMVFQF 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 371 PNSSLnprlnVLQIIEEGLrVHQPTLSGAQRE---QQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLI 447
Cdd:PRK13631 125 PEYQL-----FKDTIEKDI-MFGPVALGVKKSeakKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 448 ILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIfISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:PRK13631 199 IFDEPTAGLDPKGEHEMMQLILDAKANNKTVFV-ITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
6-248 |
1.21e-18 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 85.40 E-value: 1.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHASEQt 85
Cdd:TIGR04406 2 LVAENLIKSYKK----RKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPD-----AGKILIDGQDITHLPMH- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGVRGnkIAMIFQEPmvSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIrqasQRLRDYPHQ-LSGGERQR 164
Cdd:TIGR04406 72 ERARLG--IGYLPQEA--SIFRKLTVEENIMAVLEIRKDLDRAEREERLEALLEEFQI----SHLRDNKAMsLSGGERRR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTL 244
Cdd:TIGR04406 144 VEIARALATNPKFILLDEPFAGVDPIAVGDIKKIIKHL-KERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEI 222
|
....
gi 804913277 245 LSAP 248
Cdd:TIGR04406 223 VANE 226
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
305-517 |
1.26e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 86.01 E-value: 1.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLR-----LIRSEGRIVFDGQSLDTLNRRQllpVRHRIQVVFQDPNSSL-NPr 378
Cdd:PRK13652 23 INFIAPRNSRIAVIGPNGAGKST----LFRhfngiLKPTSGSVLIRGEPITKENIRE---VRKFVGLVFQNPDDQIfSP- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 lNVLQIIEEGlrvhqPT---LSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:PRK13652 95 -TVEQDIAFG-----PInlgLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 456 LDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:PRK13652 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
27-234 |
1.45e-18 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 87.24 E-value: 1.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 27 AISLQVNAGETLALVGESGSGKS--VTALSILrllpTPPAvylSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEpmVS 104
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTslINAISGL----TRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD--AR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 105 LNPLHTLEKqlyevlSLHRGMRREaaraeMIGCLDRV----GIRQAsqrLRDYPHQLSGGERQRVMIAMALLTRPELLIA 180
Cdd:PRK11144 87 LFPHYKVRG------NLRYGMAKS-----MVAQFDKIvallGIEPL---LDRYPGSLSGGEKQRVAIGRALLTAPELLLM 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 804913277 181 DEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK11144 153 DEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGK 206
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-228 |
2.13e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 85.09 E-value: 2.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLHASE 83
Cdd:PRK14258 6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVRgnKIAMIFQEPmvSLNPLHTLEKQLYEVLSLhrGMRreaARAEMIGCLDRvGIRQAS------QRLRDYPHQL 157
Cdd:PRK14258 82 NLNRLRR--QVSMVHPKP--NLFPMSVYDNVAYGVKIV--GWR---PKLEIDDIVES-ALKDADlwdeikHKIHKSALDL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVA 228
Cdd:PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-234 |
2.13e-18 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 88.16 E-value: 2.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVgfrQQQHVRPVVNAISLQVNAGETLALVGESGSGKS--VTALSILRllptPPAvylSGDIRFHGESLLHA 81
Cdd:COG3845 256 VVLEVENLSV---RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSelAEALAGLR----PPA---SGSIRLDGEDITGL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SeqtLRGVRGNKIAMIFQEPM-VSLNPLHTLEKQLyeVLSLHRG--------MRREAARAEMIGCLDRVGIRQASQRLRd 152
Cdd:COG3845 326 S---PRERRRLGVAYIPEDRLgRGLVPDMSVAENL--ILGRYRRppfsrggfLDRKAIRAFAEELIEEFDVRTPGPDTP- 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 153 yPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQH 232
Cdd:COG3845 400 -ARSLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLEL-RDAGAAVLLISEDLDEILALSDRIAVMYE 477
|
..
gi 804913277 233 GK 234
Cdd:COG3845 478 GR 479
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
273-505 |
2.57e-18 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 88.24 E-value: 2.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRVAFPIRKGILKrvvdhnvVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDT 351
Cdd:PRK10535 2 TALLELKDIRRSYPSGEEQVE-------VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKpTSGTYRVAGQDVAT 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 352 LNRRQLLPVRHR-IQVVFQdpNSSLNPRLNVLQIIEegLRVHQPTLSGAQREQQVKAVMMEVGLDPETRHRyPAEFSGGQ 430
Cdd:PRK10535 75 LDADALAQLRREhFGFIFQ--RYHLLSHLTAAQNVE--VPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-PSQLSGGQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 431 RQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK-HRLayIFISHDLHVVrALCHQVIVLRQGEVV 505
Cdd:PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRgHTV--IIVTHDPQVA-AQAERVIEIRDGEIV 222
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
305-508 |
2.70e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 85.17 E-value: 2.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRL-IRSEGRIVFDGQSLDTLNRRQllpVRHRIQVVFQDPNSSL-------- 375
Cdd:PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIyLPQRGRVKVMGREVNAENEKW---VRSKVGLVFQDPDDQVfsstvwdd 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 376 ------NPRLNVLQIIEeglRVhqptlsgaqrEQQVKAVMMEvgldpETRHRYPAEFSGGQRQRIAVARALILKPSLIIL 449
Cdd:PRK13647 101 vafgpvNMGLDKDEVER---RV----------EEALKAVRMW-----DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 450 DEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGK-TVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
7-236 |
2.74e-18 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 83.79 E-value: 2.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 7 AIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTPPAVYLSG-DIRfhgesLLHASEq 84
Cdd:cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYkPTSGSVLLDGtDIR-----QLDPAD- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 tlrgVRGNkIAMIFQEPmvslnplHTLEKQLYEVLSLHRGMRREAA--RAEMIGCLDrvgirqasQRLRDYPH------- 155
Cdd:cd03245 76 ----LRRN-IGYVPQDV-------TLFYGTLRDNITLGAPLADDERilRAAELAGVT--------DFVNKHPNgldlqig 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 ----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNmgLLFITHNLSIVkKLADSVAVMQ 231
Cdd:cd03245 136 ergrGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKT--LIIITHRPSLL-DLVDRIIVMD 212
|
....*
gi 804913277 232 HGKCV 236
Cdd:cd03245 213 SGRIV 217
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
305-509 |
3.24e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 85.52 E-value: 3.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST-----TGLallrLIRSEGRI--VFDGQSLDTLNRR-------------------QLL 358
Cdd:PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTfiehlNAL----LLPDTGTIewIFKDEKNKKKTKEkekvleklviqktrfkkikKIK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 359 PVRHRIQVVFQDPNSSLnprlnVLQIIEEGLrVHQPTLSGAQREQQVK--AVMME-VGLDPETRHRYPAEFSGGQRQRIA 435
Cdd:PRK13651 102 EIRRRVGVVFQFAEYQL-----FEQTIEKDI-IFGPVSMGVSKEEAKKraAKYIElVGLDESYLQRSPFELSGGQKRRVA 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 436 VARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQ 509
Cdd:PRK13651 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK-TIILVTHDLDNVLEWTKRTIFFKDGKIIKDGD 248
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
9-236 |
3.40e-18 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 83.47 E-value: 3.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 9 ENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAvyLSGDIRFHGESLlhASEQTLRg 88
Cdd:cd03234 7 WDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT--TSGQILFNGQPR--KPDQFQK- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 89 vrgnKIAMIFQEPMvsLNPLHTLEKQLY--EVLSLHRGMRrEAARAEMIgclDRVGIRQ-ASQRLRD-YPHQLSGGERQR 164
Cdd:cd03234 82 ----CVAYVRQDDI--LLPGLTVRETLTytAILRLPRKSS-DAIRKKRV---EDVLLRDlALTRIGGnLVKGISGGERRR 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
21-234 |
3.67e-18 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 83.35 E-value: 3.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 21 VRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL-----PTppavylSGDIRFHGesllhaseqtlrgvrgnKIA 95
Cdd:cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKS----TLLRLLagiypPD------SGTVTVRG-----------------RVS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 96 MIFqEPMVSLNPLHTLEKQLYEVLSLHrGMRREAARAEMIGCLDRVGIRQA-SQRLRDYphqlSGGERQRVMIAMALLTR 174
Cdd:cd03220 87 SLL-GLGGGFNPELTGRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGDFiDLPVKTY----SSGMKARLAFAIATALE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 175 PELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGK 219
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
22-230 |
5.97e-18 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 81.90 E-value: 5.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtpPAvylSGdirfhgesllhaseqTLRGVRGNKIAMIFQEP 101
Cdd:NF040873 5 RPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLR--PT---SG---------------TVRRAGGARVAYVPQRS 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 102 MVSlnplHTLEKQLYEVLSL----HRGMRRE---AARAEMIGCLDRVGIRQ-ASQRLRDyphqLSGGERQRVMIAMALLT 173
Cdd:NF040873 65 EVP----DSLPLTVRDLVAMgrwaRRGLWRRltrDDRAAVDDALERVGLADlAGRQLGE----LSGGQRQRALLAQGLAQ 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 174 RPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVkKLADSVAVM 230
Cdd:NF040873 137 EADLLLLDEPTTGLDAESRERIIALLAEEHAR-GATVVVVTHDLELV-RRADPCVLL 191
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
288-520 |
6.15e-18 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 87.02 E-value: 6.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 288 RKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTTGLALLRLIRS----EGRIVFDGQSLDtlnRRQLlpvRHR 363
Cdd:TIGR00955 37 RKHLLKN----------VSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkgSGSVLLNGMPID---AKEM---RAI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 364 IQVVFQDpnsSLN-PRLNVLQ--IIEEGLRVHQpTLSGAQREQQVKAVMMEVGLDP--ETRHRYPAE---FSGGQRQRIA 435
Cdd:TIGR00955 101 SAYVQQD---DLFiPTLTVREhlMFQAHLRMPR-RVTKKEKRERVDEVLQALGLRKcaNTRIGVPGRvkgLSGGERKRLA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 436 VARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGqcervft 515
Cdd:TIGR00955 177 FASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG------- 249
|
....*
gi 804913277 516 APQQA 520
Cdd:TIGR00955 250 SPDQA 254
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
4-234 |
6.66e-18 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 83.15 E-value: 6.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtpPAvylSGDIRFHGESL----L 79
Cdd:COG1137 2 MTLEAENLVKSYGK----RTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVK--PD---SGRIFLDGEDIthlpM 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 80 HaseqtLRGVRGnkIAMIFQEPMV--SLnplhTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIrqasQRLRDYP-HQ 156
Cdd:COG1137 73 H-----KRARLG--IGYLPQEASIfrKL----TVEDNILAVLEL-RKLSKKEREERLEELLEEFGI----THLRKSKaYS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALD-VSVqAQILSLLRELqRELNMGLLfIT-HN----LSIVkklaDSVAVM 230
Cdd:COG1137 137 LSGGERRRVEIARALATNPKFILLDEPFAGVDpIAV-ADIQKIIRHL-KERGIGVL-ITdHNvretLGIC----DRAYII 209
|
....
gi 804913277 231 QHGK 234
Cdd:COG1137 210 SEGK 213
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
305-521 |
7.01e-18 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 83.06 E-value: 7.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLNRRQLlpVRHRIQVVFQDPNSSLNPrlnVLQI 384
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAEL--ARHRAYLSQQQTPPFAMP---VFQY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 ieegLRVHQPTLSG-AQREQQVKAVMMEVGLDPETrHRYPAEFSGGQRQRIAVArALILK--PS------LIILDEPTSS 455
Cdd:PRK03695 90 ----LTLHQPDKTRtEAVASALNEVAEALGLDDKL-GRSVNQLSGGEWQRVRLA-AVVLQvwPDinpagqLLLLDEPMNS 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 456 LDKTVQAQILALLKSLQQKHRlAYIFISHDL-HVVRAlCHQVIVLRQGEVVEQGQCERVFTAP--QQAY 521
Cdd:PRK03695 164 LDVAQQAALDRLLSELCQQGI-AVVMSSHDLnHTLRH-ADRVWLLKQGKLLASGRRDEVLTPEnlAQVF 230
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
5-217 |
8.88e-18 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 83.21 E-value: 8.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtppavYLSGDIRFHGESLLHASEQ 84
Cdd:PRK11248 1 MLQISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEGPGAE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 tlRGVrgnkiamIFQEPmvSLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQASQRlrdYPHQLSGGERQR 164
Cdd:PRK11248 72 --RGV-------VFQNE--GLLPWRNVQDNVAFGLQL-AGVEKMQRLEIAHQMLKKVGLEGAEKR---YIWQLSGGQRQR 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNL 217
Cdd:PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
305-508 |
9.17e-18 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 82.20 E-value: 9.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSldtlnrRQLLpvrhriqvvfqDPNSSLNPRL 379
Cdd:cd03220 41 VSFEVPRGERIGLIGRNGAGKST----LLRLLAgiyppDSGTVTVRGRV------SSLL-----------GLGGGFNPEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHqptlsGAQREQqVKAVMMEVgldpetrhrypAEFSG--------------GQRQRIAVARALILKPS 445
Cdd:cd03220 100 TGRENIYLNGRLL-----GLSRKE-IDEKIDEI-----------IEFSElgdfidlpvktyssGMKARLAFAIATALEPD 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 446 LIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:cd03220 163 ILLIDEVLAVGDAAFQEKCQRRLRELLKQGK-TVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
277-508 |
9.82e-18 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 84.37 E-value: 9.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 277 EVDKLRVAFPIR----------KGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTT-----GLallrLIRSEGR 341
Cdd:COG4586 3 EVENLSKTYRVYekepglkgalKGLFRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTikmltGI----LVPTSGE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 342 IVFDGqsLD-TLNRRQLLpvrHRIQVVF-QdpNSSLNPRLNVLqiieEGLRVHQPT--LSGAQREQQVKAV--MMEVG-- 413
Cdd:COG4586 79 VRVLG--YVpFKRRKEFA---RRIGVVFgQ--RSQLWWDLPAI----DSFRLLKAIyrIPDAEYKKRLDELveLLDLGel 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 414 LDPETRhrypaEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALC 493
Cdd:COG4586 148 LDTPVR-----QLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALC 222
|
250
....*....|....*
gi 804913277 494 HQVIVLRQGEVVEQG 508
Cdd:COG4586 223 DRVIVIDHGRIIYDG 237
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
305-485 |
1.52e-17 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 81.68 E-value: 1.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRS-----EGRIVFDGQSLDTLNrrqllPVRHRIQV--VFQDP---NSS 374
Cdd:PRK10247 26 ISFSLRAGEFKLITGPSGCGKST----LLKIVASlisptSGTLLFEGEDISTLK-----PEIYRQQVsyCAQTPtlfGDT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 375 LNPRLnvlqIIEEGLRVHQPtlsgaqREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:PRK10247 97 VYDNL----IFPWQIRNQQP------DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166
|
170 180 190
....*....|....*....|....*....|.
gi 804913277 455 SLDKTVQAQILALLKSLQQKHRLAYIFISHD 485
Cdd:PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
28-236 |
1.58e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 82.87 E-value: 1.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASE-QTLRGVRgNKIAMIFQEPmvsln 106
Cdd:PRK13649 26 VNLTIEDGSYTAFIGHTGSGKS-TIMQLLNGLHVPT----QGSVRVDDTLITSTSKnKDIKQIR-KKVGLVFQFP----- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 107 plhtlEKQLYEVLSL--------HRGMRREAARAEMIGCLDRVGIrqaSQRLRDY-PHQLSGGERQRVMIAMALLTRPEL 177
Cdd:PRK13649 95 -----ESQLFEETVLkdvafgpqNFGVSQEEAEALAREKLALVGI---SESLFEKnPFELSGGQMRRVAIAGILAMEPKI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 178 LIADEPTTALDVSVQAQILSLLRELQrELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK13649 167 LVLDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
305-508 |
1.66e-17 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 81.92 E-value: 1.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALL---RLIRSEGRIVFDGQslDTLNrrqlLPVRHR----IQVVFQDPNSSlnP 377
Cdd:TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAghpSYEVTSGTILFKGQ--DLLE----LEPDERaragLFLAFQYPEEI--P 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 RLNVLQIIEEGLRVH-----QPTLSGAQREQQVKAVMMEVGLDPETRHRYPAE-FSGGQRQRIAVARALILKPSLIILDE 451
Cdd:TIGR01978 91 GVSNLEFLRSALNARrsargEEPLDLLDFEKLLKEKLALLDMDEEFLNRSVNEgFSGGEKKRNEILQMALLEPKLAILDE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 452 PTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVI-VLRQGEVVEQG 508
Cdd:TIGR01978 171 IDSGLDIDALKIVAEGINRLREPDR-SFLIITHYQRLLNYIKPDYVhVLLDGRIVKSG 227
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
312-516 |
1.69e-17 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 82.34 E-value: 1.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 312 GETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQllpVRHRIQVVFQdpNSSLNPRLNVLQIIEEGLR 390
Cdd:PRK10253 33 GHFTAIIGPNGCGKSTLLRTLSRLMTpAHGHVWLDGEHIQHYASKE---VARRIGLLAQ--NATTPGDITVQELVARGRY 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 391 VHQPTLSGAQREQQ--VKAVMMEVGLDPETRHRYPAeFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALL 468
Cdd:PRK10253 108 PHQPLFTRWRKEDEeaVTKAMQATGITHLADQSVDT-LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 804913277 469 KSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTA 516
Cdd:PRK10253 187 SELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
9-234 |
1.96e-17 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 81.36 E-value: 1.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 9 ENLSVGFRQQQHvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTPPAVYLSGD-IRFHGESLLHAseqtl 86
Cdd:cd03248 15 QNVTFAYPTRPD-TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYqPQGGQVLLDGKpISQYEHKYLHS----- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 87 rgvrgnKIAMIFQEPMVSLNPLHtlEKQLYEVLSLHRGMRREAARA----EMIGCLDRVGIRQASQRlrdyPHQLSGGER 162
Cdd:cd03248 89 ------KVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKahahSFISELASGYDTEVGEK----GSQLSGGQK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGK 234
Cdd:cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVER-ADQILVLDGGR 225
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
5-236 |
2.05e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 83.36 E-value: 2.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQ-HVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPA-------VYLSGDIRFHGE 76
Cdd:PRK13631 21 ILRVKNLYCVFDEKQeNELVALNNISYTFEKNKIYFIIGNSGSGKS-TLVTHFNGLIKSKYgtiqvgdIYIGDKKNNHEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 77 SLLHASEQTLRGVRGNK-IAMIFQEPMVSLNPlHTLEKQL-YEVLSLhrGMRREAARAEMIGCLDRVGIRqaSQRLRDYP 154
Cdd:PRK13631 100 ITNPYSKKIKNFKELRRrVSMVFQFPEYQLFK-DTIEKDImFGPVAL--GVKKSEAKKLAKFYLNKMGLD--DSYLERSP 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGK 253
|
..
gi 804913277 235 CV 236
Cdd:PRK13631 254 IL 255
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
5-236 |
2.64e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 82.16 E-value: 2.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHVrpvVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLlhaSEQ 84
Cdd:PRK13652 3 LIETRDLCYSYSGSKEA---LNNINFIAPRNSRIAVIGPNGAGKS-TLFRHFNGILKPT----SGSVLIRGEPI---TKE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRgNKIAMIFQEPMVSLnpLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLrdyPHQLSGGERQR 164
Cdd:PRK13652 72 NIREVR-KFVGLVFQNPDDQI--FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV---PHHLSGGEKKR 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
6-204 |
3.43e-17 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 80.10 E-value: 3.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVgfrqQQHVRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPavyLSGDIRFHGESLlhase 83
Cdd:TIGR01189 1 LAARNLAC----SRGERMLFEGLSFTLNAGEALQVTGPNGIGKT----TLLRILAglLRP---DSGEVRWNGTPL----- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVRGNKIAMIFQEPmvSLNPLHTLEKQLYEVLSLHRGMRREAARAemigcLDRVGIRQASQRLrdyPHQLSGGERQ 163
Cdd:TIGR01189 65 AEQRDEPHENILYLGHLP--GLKPELSALENLHFWAAIHGGAQRTIEDA-----LAAVGLTGFEDLP---AAQLSAGQQR 134
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRE-LQR 204
Cdd:TIGR01189 135 RLALARLWLSRRPLWILDEPTTALDKAGVALLAGLLRAhLAR 176
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
305-508 |
3.69e-17 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 81.60 E-value: 3.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR----SEGRIVFDGQSLDTLNR--RQLLPVRHRIQVVFQDPNssLNPR 378
Cdd:PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksAGSHIELLGRTVQREGRlaRDIRKSRANTGYIFQQFN--LVNR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQP----TLSGAQREQQVKAV--MMEVGLdPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:PRK09984 101 LSVLENVLIGALGSTPfwrtCFSWFTREQKQRALqaLTRVGM-VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEP 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 453 TSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:PRK09984 180 IASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
305-518 |
4.24e-17 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 80.71 E-value: 4.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLI-RSEGRIVFDGQSLdtlnrrQLLPV--RHRIQVVFQDPNSSLNPRLNV 381
Cdd:PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVpRDAGNIIIDDEDI------SLLPLhaRARRGIGYLPQEASIFRRLSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 382 LQIIEEGLRVHQpTLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQ 461
Cdd:PRK10895 96 YDNLMAVLQIRD-DLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 462 AQILALLKSLQQkHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAPQ 518
Cdd:PRK10895 174 IDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEH 229
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
305-505 |
5.41e-17 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 80.90 E-value: 5.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLN--RRQllpvrHRIQVVFQDPNSSLNP 377
Cdd:COG1101 25 LNLTIEEGDFVTVIGSNGAGKST----LLNAIAgslppDSGSILIDGKDVTKLPeyKRA-----KYIGRVFQDPMMGTAP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 RLNvlqiIEE------------GLRvhqPTLSGAQREQqVKAVMMEVGLDPETRHRYPAEF-SGGQRQRIAVARALILKP 444
Cdd:COG1101 96 SMT----IEEnlalayrrgkrrGLR---RGLTKKRREL-FRELLATLGLGLENRLDTKVGLlSGGQRQALSLLMATLTKP 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 445 SLIILDEPTSSLD-KTvQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:COG1101 168 KLLLLDEHTAALDpKT-AALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
1-247 |
5.81e-17 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 84.00 E-value: 5.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLH 80
Cdd:PRK10790 336 LQSGRIDIDNVSFAYRDD---NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT-----EGEIRLDGRPLSS 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRgvrgNKIAMIFQEPMVslnplhtLEKQLYEVLSLHRGMRREAaraeMIGCLDRVGIRQASQRLRDYPH----- 155
Cdd:PRK10790 408 LSHSVLR----QGVAMVQQDPVV-------LADTFLANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYtplge 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 ---QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLS-IVKklADSVAVMQ 231
Cdd:PRK10790 473 qgnNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLStIVE--ADTILVLH 548
|
250
....*....|....*.
gi 804913277 232 HGKCVENQRADTLLSA 247
Cdd:PRK10790 549 RGQAVEQGTHQQLLAA 564
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-234 |
6.07e-17 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 78.41 E-value: 6.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSvgFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtpPAvylSGDIRFHGESLlhasEQT 85
Cdd:cd03246 1 LEVENVS--FRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PT---SGRVRLDGADI----SQW 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRGVRGNKIAMIFQEpmvslnplhtleKQLYEvlslhrgmrreAARAEMIgcldrvgirqasqrlrdyphqLSGGERQRV 165
Cdd:cd03246 70 DPNELGDHVGYLPQD------------DELFS-----------GSIAENI---------------------LSGGQRQRL 105
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 166 MIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVkKLADSVAVMQHGK 234
Cdd:cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETL-ASADRILVLEDGR 172
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
6-249 |
6.08e-17 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 80.27 E-value: 6.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRqqqhvrpvVNAISLQVNAGETLALVGESGSGKSvTALSILR-LLPTppavylSGDIRFHGESLLHASEQ 84
Cdd:COG4138 1 LQLNDVAVAGR--------LGPISAQVNAGELIHLIGPNGAGKS-TLLARMAgLLPG------QGEILLNGRPLSDWSAA 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRGnkiamifqepMVSLNPLHTLEKQLYEVLSLHrgMRREAARAEMIGCLDRVgirqaSQRLRDYP------HQLS 158
Cdd:COG4138 66 ELARHRA----------YLSQQQSPPFAMPVFQYLALH--QPAGASSEAVEQLLAQL-----AEALGLEDklsrplTQLS 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 159 GGERQRVMIAMALLT-------RPELLIADEPTTALDVSVQAQILSLLRELQRElnmGLLFIT--HNLSIVKKLADSVAV 229
Cdd:COG4138 129 GGEWQRVRLAAVLLQvwptinpEGQLLLLDEPMNSLDVAQQAALDRLLRELCQQ---GITVVMssHDLNHTLRHADRVWL 205
|
250 260
....*....|....*....|
gi 804913277 230 MQHGKCVENQRADTLLSAPT 249
Cdd:COG4138 206 LKQGKLVASGETAEVMTPEN 225
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
305-503 |
6.83e-17 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 77.49 E-value: 6.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRseGRIVFDgqsldtlnrrqllpvrhriqvvfqdpnsslnprlnvlqi 384
Cdd:cd03221 19 ISLTINPGDRIGLVGRNGAGKST----LLKLIA--GELEPD--------------------------------------- 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 ieEGlrvhqptlsgaqreqqvkavmmEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQI 464
Cdd:cd03221 54 --EG----------------------IVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109
|
170 180 190
....*....|....*....|....*....|....*....
gi 804913277 465 LALLKSLQQkhrlAYIFISHDLHVVRALCHQVIVLRQGE 503
Cdd:cd03221 110 EEALKEYPG----TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
273-504 |
6.91e-17 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 78.63 E-value: 6.91e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 APLLEVDKLRVAFPIRkgilkrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQsldt 351
Cdd:cd03215 2 EPVLEVRGLSVKGAVR---------------DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAsGEITLDGK---- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 352 lnrrqllPVRHRiqvvfqdpnsslNPRlnvlqiieeglrvhqptlsgaqreqqvKAVMMEVGLDPETRHRY--------- 422
Cdd:cd03215 63 -------PVTRR------------SPR---------------------------DAIRAGIAYVPEDRKREglvldlsva 96
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 423 -----PAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKhRLAYIFISHDLHVVRALCHQVI 497
Cdd:cd03215 97 enialSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRIL 175
|
....*..
gi 804913277 498 VLRQGEV 504
Cdd:cd03215 176 VMYEGRI 182
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
305-513 |
8.22e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 83.30 E-value: 8.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLNRRqlLPVRHRIQVVFQDpnSSLNPRL 379
Cdd:PRK09700 24 VNLTVYPGEIHALLGENGAGKST----LMKVLSgihepTKGTITINNINYNKLDHK--LAAQLGIGIIYQE--LSVIDEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGlRVHQPTLSGAQ----REQQVKAVMM--EVGL--DPETRhryPAEFSGGQRQRIAVARALILKPSLIILDE 451
Cdd:PRK09700 96 TVLENLYIG-RHLTKKVCGVNiidwREMRVRAAMMllRVGLkvDLDEK---VANLSISHKQMLEIAKTLMLDAKVIIMDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 452 PTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERV 513
Cdd:PRK09700 172 PTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
317-515 |
8.27e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 80.82 E-value: 8.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 317 LVGESGSGKST-----TGLallrLIRSEGR-IVFDGQSLDTLNR-RQLLPVRHRIQVVFQDPNSSLnprlnVLQIIEEGL 389
Cdd:PRK13645 42 VIGTTGSGKSTmiqltNGL----IISETGQtIVGDYAIPANLKKiKEVKRLRKEIGLVFQFPEYQL-----FQETIEKDI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 390 rVHQPTLSGAQREQQVKAV---MMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILA 466
Cdd:PRK13645 113 -AFGPVNLGENKQEAYKKVpelLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 804913277 467 LLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFT 515
Cdd:PRK13645 192 LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
306-516 |
1.20e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 80.31 E-value: 1.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvrhrIQVVFQDPNSSLNPRLNVLQI 384
Cdd:PRK15056 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRlASGKISILGQPTRQALQKNL------VAYVPQSEEVDWSFPVLVEDV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 IEEGLRVHQPTLSGAQRE--QQVKAVMMEVGLdPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQA 462
Cdd:PRK15056 101 VMMGRYGHMGWLRRAKKRdrQIVTAALARVDM-VEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 804913277 463 QILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRqGEVVEQGQCERVFTA 516
Cdd:PRK15056 180 RIISLLRELRDEGK-TMLVSTHNLGSVTEFCDYTVMVK-GTVLASGPTETTFTA 231
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
6-248 |
1.36e-16 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 79.12 E-value: 1.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTPPAVYLSG-DIrfhgeSLLHASE 83
Cdd:cd03218 1 LRAENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVkPDSGKILLDGqDI-----TKLPMHK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGvrgnkIAMIFQEPMV--SLnplhTLEKQLYEVLSLHrGMRREAARAEMIGCLDRVGIrqasQRLRDYP-HQLSGG 160
Cdd:cd03218 72 RARLG-----IGYLPQEASIfrKL----TVEENILAVLEIR-GLSKKEREEKLEELLEEFHI----THLRKSKaSSLSGG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALD-VSVQaQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQ 239
Cdd:cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDpIAVQ-DIQKIIKIL-KDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEG 215
|
....*....
gi 804913277 240 RADTLLSAP 248
Cdd:cd03218 216 TPEEIAANE 224
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-237 |
1.54e-16 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 79.30 E-value: 1.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLPTPPAvY--LSGDIRFHGESL 78
Cdd:CHL00131 3 KNKPILEIKNLHASVNE----NEILKGLNLSINKGEIHAIMGPNGSGKS----TLSKVIAGHPA-YkiLEGDILFKGESI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 79 LHAsEQTLRGVRGnkIAMIFQEPM----VS--------------------LNPLhtlekQLYEVLSLHrgmrreaaraem 134
Cdd:CHL00131 74 LDL-EPEERAHLG--IFLAFQYPIeipgVSnadflrlaynskrkfqglpeLDPL-----EFLEIINEK------------ 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 135 igcLDRVGIrQASQRLRDYPHQLSGGERQRVMI-AMALLtRPELLIADEPTTALDVSVQAQILSLLRELQRELNmGLLFI 213
Cdd:CHL00131 134 ---LKLVGM-DPSFLSRNVNEGFSGGEKKRNEIlQMALL-DSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILI 207
|
250 260
....*....|....*....|....*..
gi 804913277 214 THN---LSIVKklADSVAVMQHGKCVE 237
Cdd:CHL00131 208 THYqrlLDYIK--PDYVHVMQNGKIIK 232
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
305-508 |
1.89e-16 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 77.59 E-value: 1.89e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-------RSEGRIVFDGQSLDTLNrrqllpVRHRIQVVFQDpnsslnp 377
Cdd:cd03213 28 VSGKAKPGELTAIMGPSGAGKST----LLNALagrrtglGVSGEVLINGRPLDKRS------FRKIIGYVPQD------- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 rlnvlqiieeglRVHQPTLSgaqreqqVKAVMMevgldpetrhrYPAE---FSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:cd03213 91 ------------DILHPTLT-------VRETLM-----------FAAKlrgLSGGERKRVSIALELVSNPSLLFLDEPTS 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 455 SLDKTVQAQILALLKSLQQKHRLayIFIShdLHVVRA----LCHQVIVLRQGEVVEQG 508
Cdd:cd03213 141 GLDSSSALQVMSLLRRLADTGRT--IICS--IHQPSSeifeLFDKLLLLSQGRVIYFG 194
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
257-523 |
2.21e-16 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 82.72 E-value: 2.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 257 LNS-EPTGDPVPLPAGQAPLLEVDKLRVAFPIRKGI------LKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTG 329
Cdd:PLN03232 1200 LNSvERVGNYIDLPSEATAIIENNRPVSGWPSRGSIkfedvhLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 330 LALLRLIRSE-GRIVFDGQSLDTLNrrqLLPVRHRIQVVFQDPN-SSLNPRLNVLQIIEEglrvHQPTLSGAQREQQVKA 407
Cdd:PLN03232 1280 NALFRIVELEkGRIMIDDCDVAKFG---LTDLRRVLSIIPQSPVlFSGTVRFNIDPFSEH----NDADLWEALERAHIKD 1352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 408 VMME--VGLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQIlalLKSLQQKHR-LAYIFISH 484
Cdd:PLN03232 1353 VIDRnpFGLDAEVSEG-GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI---QRTIREEFKsCTMLVIAH 1428
|
250 260 270
....*....|....*....|....*....|....*....
gi 804913277 485 DLHVVRAlCHQVIVLRQGEVVEQGQCERVFTAPQQAYTR 523
Cdd:PLN03232 1429 RLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-234 |
2.99e-16 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 78.49 E-value: 2.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGESLlh 80
Cdd:PRK11300 1 MSQPLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKT-TVFNCLTGFYKPTG----GTILLRGQHI-- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 aseqtlRGVRGNKIAM-----------IFQEPMVSLNPLHTLEKQ--------LYEVLSLHRGMRREAARAEMigCLDRV 141
Cdd:PRK11300 70 ------EGLPGHQIARmgvvrtfqhvrLFREMTVIENLLVAQHQQlktglfsgLLKTPAFRRAESEALDRAAT--WLERV 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 142 GIRQASQRlrdYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVK 221
Cdd:PRK11300 142 GLLEHANR---QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVM 218
|
250
....*....|...
gi 804913277 222 KLADSVAVMQHGK 234
Cdd:PRK11300 219 GISDRIYVVNQGT 231
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
311-509 |
3.21e-16 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 81.85 E-value: 3.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 311 PGETLGLVGESGSGKSTTGLALLRLIRSEGrivFDGQSLdTLNRRQLLPVRHRIQVVFQDpnSSLNPRLNVLQ--IIEEG 388
Cdd:PLN03211 93 PGEILAVLGPSGSGKSTLLNALAGRIQGNN---FTGTIL-ANNRKPTKQILKRTGFVTQD--DILYPHLTVREtlVFCSL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 389 LRVHQpTLSGAQREQQVKAVMMEVGL----DPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQI 464
Cdd:PLN03211 167 LRLPK-SLTKQEKILVAESVISELGLtkceNTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRL 245
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 804913277 465 LALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQ 509
Cdd:PLN03211 246 VLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGK 290
|
|
| chvA |
TIGR01192 |
glucan exporter ATP-binding protein; This model describes glucan exporter ATP binding protein ... |
25-267 |
3.46e-16 |
|
glucan exporter ATP-binding protein; This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 130260 [Multi-domain] Cd Length: 585 Bit Score: 81.47 E-value: 3.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 25 VNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTLRgvrgNKIAMIFQEPMVs 104
Cdd:TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKT-TLINLLQRVYDPT----VGQILIDGIDINTVTRESLR----KSIATVFQDAGL- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 105 lnplhtLEKQLYEVLSLHRgmrREAARAEMIGCLDRVGIRQ-ASQRLRDYP-------HQLSGGERQRVMIAMALLTRPE 176
Cdd:TIGR01192 421 ------FNRSIRENIRLGR---EGATDEEVYEAAKAAAAHDfILKRSNGYDtlvgergNRLSGGERQRLAIARAILKNAP 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 177 LLIADEPTTALDVSVQAQILSLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKCVENQRADTLLSAPTHPY---- 252
Cdd:TIGR01192 492 ILVLDEATSALDVETEARVKNAIDALRK--NRTTFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQELIQKDGRFYkllr 568
|
250
....*....|....*
gi 804913277 253 TQKLLNSEPTGDPVP 267
Cdd:TIGR01192 569 RSGLLTNQPATKPLR 583
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
30-247 |
3.75e-16 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 77.58 E-value: 3.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 30 LQVNAGETLALVGESGSGKSVTALSILRLlpTPPAvylSGDIRFHGESllhaseqtlRGVRGNKIAMIFQEPMVSLNPLH 109
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGL--IPPA---KGTVKVAGAS---------PGKGWRHIGYVPQRHEFAWDFPI 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 110 TLEKQLYEVLSLHRGMRREAARAEMIG---CLDRVGIrqasQRLRDYP-HQLSGGERQRVMIAMALLTRPELLIADEPTT 185
Cdd:TIGR03771 67 SVAHTVMSGRTGHIGWLRRPCVADFAAvrdALRRVGL----TELADRPvGELSGGQRQRVLVARALATRPSVLLLDEPFT 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 186 ALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVaVMQHGKCVENQRADTLLSA 247
Cdd:TIGR03771 143 GLDMPTQELLTELFIELAGA-GTAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQLQDP 202
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
305-468 |
4.31e-16 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 76.84 E-value: 4.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLnrrqllpvRHRIQVVFQDPNSSLNPRL 379
Cdd:PRK13539 21 LSFTLAAGEALVLTGPNGSGKTT----LLRLIAgllppAAGTIKLDGGDIDDP--------DVAEACHYLGHRNAMKPAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHqptlsgAQREQQVKAVMMEVGLDPETrHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:PRK13539 89 TVAENLEFWAAFL------GGEELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
|
....*....
gi 804913277 460 VQAQILALL 468
Cdd:PRK13539 162 AVALFAELI 170
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
6-234 |
4.34e-16 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 75.18 E-value: 4.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFrqqqHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRFHgesllhase 83
Cdd:cd03221 1 IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKS-TLLKLIagELEPD------EGIVTWG--------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 qtlrgvRGNKIAmifqepmvslnplhtlekqlyevlslhrgmrreaaraemigcldrvgirqasqrlrdYPHQLSGGERQ 163
Cdd:cd03221 61 ------STVKIG---------------------------------------------------------YFEQLSGGEKM 77
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRelnmGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:cd03221 78 RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
305-508 |
4.52e-16 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 79.08 E-value: 4.52e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQSLDTLNRRqllpVRHRIQVVFQDPNssLNPRLNVlq 383
Cdd:PRK13537 26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDaGSISLCGEPVPSRARH----ARQRVGVVPQFDN--LDPDFTV-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iiEEGLRVHQP--TLSGAQREQQVKAVMMEVGLDPETRHRYpAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQ 461
Cdd:PRK13537 98 --RENLLVFGRyfGLSAAAARALVPPLLEFAKLENKADAKV-GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 804913277 462 AQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:PRK13537 175 HLMWERLRSLLARGK-TILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
305-508 |
4.62e-16 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 80.87 E-value: 4.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIrsEGRIVFDGQSLDTLNRRQ--LLPVR-HR--IQVVFQDPNssLNPRL 379
Cdd:PRK15439 30 IDFTLHAGEVHALLGGNGAGKST----LMKII--AGIVPPDSGTLEIGGNPCarLTPAKaHQlgIYLVPQEPL--LFPNL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPTlsgaqrEQQVKAVMMEVG--LDPETRhryPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK15439 102 SVKENILFGLPKRQAS------MQKMKQLLAALGcqLDLDSS---AGSLEVADRQIVEILRGLMRDSRILILDEPTASLT 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 804913277 458 KTVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:PRK15439 173 PAETERLFSRIRELLAQG-VGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
305-491 |
5.26e-16 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 76.63 E-value: 5.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLDTLN---RRQLLPVRHRiqvvfqdpnSSLN 376
Cdd:TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTT----LLRILAgllrpDSGEVRWNGTPLAEQRdepHENILYLGHL---------PGLK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLqiieEGLRVHQPTLSGAQREqqVKAVMMEVGLDPETrHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:TIGR01189 86 PELSAL----ENLHFWAAIHGGAQRT--IEDALAAVGLTGFE-DLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTAL 158
|
170 180 190
....*....|....*....|....*....|....*
gi 804913277 457 DKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRA 491
Cdd:TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVEA 193
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
307-505 |
6.53e-16 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 80.76 E-value: 6.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 307 FTLHPGETLGLVGESGSGKSTtglaLLRLIRSE-----GRIVFDgQSLdTLNRRQLLPVR-------------------- 361
Cdd:PRK11147 24 LHIEDNERVCLVGRNGAGKST----LMKILNGEvllddGRIIYE-QDL-IVARLQQDPPRnvegtvydfvaegieeqaey 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 362 ----HRI-QVVFQDPNSSLnprLNVLQIIEEGLRvHQptlSGAQREQQVKAVMMEVGLDPETRHrypAEFSGGQRQRIAV 436
Cdd:PRK11147 98 lkryHDIsHLVETDPSEKN---LNELAKLQEQLD-HH---NLWQLENRINEVLAQLGLDPDAAL---SSLSGGWLRKAAL 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 437 ARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQkhrlAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:PRK11147 168 GRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG----SIIFISHDRSFIRNMATRIVDLDRGKLV 232
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
3-234 |
7.76e-16 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 77.04 E-value: 7.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQQQH------------------VRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL----- 59
Cdd:COG1134 2 SSMIEVENVSKSYRLYHEpsrslkelllrrrrtrreEFWALKDVSFEVERGESVGIIGRNGAGKS----TLLKLIagile 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 60 PTppavylSGDIRFHGesllhaseqtlrgvrgnKIAMIFqEPMVSLNPLHTLEKQLYEVLSLHrGMRREAARAemigCLD 139
Cdd:COG1134 78 PT------SGRVEVNG-----------------RVSALL-ELGAGFHPELTGRENIYLNGRLL-GLSRKEIDE----KFD 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 140 RV----GIRQA-SQRLRDYphqlSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFIT 214
Cdd:COG1134 129 EIvefaELGDFiDQPVKTY----SSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRES-GRTVIFVS 203
|
250 260
....*....|....*....|
gi 804913277 215 HNLSIVKKLADSVAVMQHGK 234
Cdd:COG1134 204 HSMGAVRRLCDRAIWLEKGR 223
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
25-237 |
8.24e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 78.13 E-value: 8.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 25 VNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRfhgeslLHASEQTLRGVRG--NKIAMIFQEPM 102
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA------IPANLKKIKEVKRlrKEIGLVFQFPE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 103 VSLNPlHTLEKQLyEVLSLHRGMRREAARAEMIGCLDRVgirqasQRLRDY----PHQLSGGERQRVMIAMALLTRPELL 178
Cdd:PRK13645 101 YQLFQ-ETIEKDI-AFGPVNLGENKQEAYKKVPELLKLV------QLPEDYvkrsPFELSGGQKRRVALAGIIAMDGNTL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 179 IADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:PRK13645 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
305-508 |
9.95e-16 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 80.59 E-value: 9.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRS-EGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSLnpRLN 380
Cdd:PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVcGGEIRVNGREIGAYGLREL---RRQFSMIPQDPvlfDGTV--RQN 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VlqiieeglrvhQPTLSGAQREqqVKAVMMEVGLdpetRHRYPAE--------------FSGGQRQRIAVARALILKPS- 445
Cdd:PTZ00243 1404 V-----------DPFLEASSAE--VWAALELVGL----RERVASEsegidsrvleggsnYSVGQRQLMCMARALLKKGSg 1466
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 446 LIILDEPTSSLDKTVQAQILALLKSLQQKHRLayIFISHDLHVVrALCHQVIVLRQGEVVEQG 508
Cdd:PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFSAYTV--ITIAHRLHTV-AQYDKIIVMDHGAVAEMG 1526
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
26-236 |
1.20e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 79.71 E-value: 1.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 26 NAISLQVNAGETLALVGESGSGKSvTALSILRLLpTPPAVYLSGDIRFHGESLlHASEQTLRGvrgnkiAMIFQEPMvsL 105
Cdd:TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKT-TLMNALAFR-SPKGVKGSGSVLLNGMPI-DAKEMRAIS------AYVQQDDL--F 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 106 NPLHTLEKQLY--EVLSLHRGMRREAARAEMIGCLDRVGIRQASQRLRDYPHQ---LSGGERQRVMIAMALLTRPELLIA 180
Cdd:TIGR00955 111 IPTLTVREHLMfqAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRvkgLSGGERKRLAFASELLTDPPLLFC 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 181 DEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:TIGR00955 191 DEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
28-236 |
1.38e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 77.47 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYLSGDIRFHGESllhaSEQTLRGVRgNKIAMIFQEPmvslnp 107
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS----KQKEIKPVR-KKVGVVFQFP------ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 108 lhtlEKQLYEVLSL--------HRGMRREAARAEMIGCLDRVGIrqASQRLRDYPHQLSGGERQRVMIAMALLTRPELLI 179
Cdd:PRK13643 94 ----ESQLFEETVLkdvafgpqNFGIPKEKAEKIAAEKLEMVGL--ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLV 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQrELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK13643 168 LDEPTAGLDPKARIEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
22-271 |
1.57e-15 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 76.73 E-value: 1.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL--PTPPAvylSGDIRFHGESLLHASEQTLRGVRgNKIAMIFQ 99
Cdd:PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKT----TLLRLIggQIAPD---HGEILFDGENIPAMSRSRLYTVR-KRMSMLFQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 100 EP--MVSLNPLHTLEKQLYEvlslHRGMRREAARAEMIGCLDRVGIRQASQRLrdyPHQLSGGERQRVMIAMALLTRPEL 177
Cdd:PRK11831 92 SGalFTDMNVFDNVAYPLRE----HTQLPAPLLHSTVMMKLEAVGLRGAAKLM---PSELSGGMARRAALARAIALEPDL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 178 LIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPThPYTQKLL 257
Cdd:PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPD-PRVRQFL 243
|
250
....*....|....*.
gi 804913277 258 NSEPTGdPVPL--PAG 271
Cdd:PRK11831 244 DGIADG-PVPFryPAG 258
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
28-249 |
1.80e-15 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 76.12 E-value: 1.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvTALS-ILRLLPTppavylSGDIRFHGESLLHASEQTLRGVRGnkiAMIFQEPMVSLN 106
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKS-TLLArMAGLLPG------SGSIQFAGQPLEAWSAAELARHRA---YLSQQQTPPFAM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 107 PlhtlekqLYEVLSLHRGMRREAARAEmiGCLDRVGIR-QASQRLRDYPHQLSGGERQRVMIAMALL-----TRPE--LL 178
Cdd:PRK03695 85 P-------VFQYLTLHQPDKTRTEAVA--SALNEVAEAlGLDDKLGRSVNQLSGGEWQRVRLAAVVLqvwpdINPAgqLL 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 179 IADEPTTALDVSVQAQILSLLRELQReLNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPT 249
Cdd:PRK03695 156 LLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
4-234 |
2.18e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 78.55 E-value: 2.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLS-VGFRQqqhvrpvvnaISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESllhas 82
Cdd:PRK15439 267 PVLTVEDLTgEGFRN----------ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-----RGGRIMLNGKE----- 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 eqtlrgVRGNKIAMIFQEPMVSL------NPLHtLEKQLY-EVLSLHRGMR-------REAARaemigcLDR----VGIR 144
Cdd:PRK15439 327 ------INALSTAQRLARGLVYLpedrqsSGLY-LDAPLAwNVCALTHNRRgfwikpaRENAV------LERyrraLNIK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 145 --QASQRLRdyphQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKK 222
Cdd:PRK15439 394 fnHAEQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQ 468
|
250
....*....|..
gi 804913277 223 LADSVAVMQHGK 234
Cdd:PRK15439 469 MADRVLVMHQGE 480
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
305-508 |
2.21e-15 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 75.84 E-value: 2.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRS-EGRIVFDGQSLDTL--NRR-QL----LPvrhriqvvfQDPnsSLN 376
Cdd:COG1137 22 VSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPdSGRIFLDGEDITHLpmHKRaRLgigyLP---------QEA--SIF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:COG1137 91 RKLTVEDNILAVLELRK--LSKKEREERLEELLEEFGIT-HLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPFAGV 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 457 D-KTVqAQILALLKSLqqKHRLAYIFIShDlHVVR---ALCHQVIVLRQGEVVEQG 508
Cdd:COG1137 168 DpIAV-ADIQKIIRHL--KERGIGVLIT-D-HNVRetlGICDRAYIISEGKVLAEG 218
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
309-514 |
2.74e-15 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 75.72 E-value: 2.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 309 LHPGETLGLVGESGSGKSTTGLALLRLIRS-EGRIVFDGQSLDTLnrrQLLPVRHRIQVVFQDPN-SSLNPRLNvlqiIE 386
Cdd:cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIfDGKIVIDGIDISKL---PLHTLRSRLSIILQDPIlFSGSIRFN----LD 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 387 EGLRVHQPTLSGAQREQQVKAVMMEV--GLDPETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDktvqaqi 464
Cdd:cd03288 117 PECKCTDDRLWEALEIAQLKNMVKSLpgGLDAVVTEG-GENFSVGQRQLFCLARAFVRKSSILIMDEATASID------- 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 465 LALLKSLQQKHRLAY-----IFISHDLHVVRAlCHQVIVLRQGEVVEQGQCERVF 514
Cdd:cd03288 189 MATENILQKVVMTAFadrtvVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLL 242
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
5-234 |
2.81e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 76.20 E-value: 2.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLsvGFRQQQhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHaSEQ 84
Cdd:PRK13638 1 MLATSDL--WFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-----KGAVLWQGKPLDY-SKR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 85 TLRGVRgNKIAMIFQEPmvslnplhtlEKQLYEV-------LSLhRGMrrEAARAEMIGCLDRVGIRQASQRLRDYPHQ- 156
Cdd:PRK13638 71 GLLALR-QQVATVFQDP----------EQQIFYTdidsdiaFSL-RNL--GVPEAEITRRVDEALTLVDAQHFRHQPIQc 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMgLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK13638 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH-VIISSHDIDLIYEISDAVYVLRQGQ 213
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
305-508 |
3.11e-15 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 75.00 E-value: 3.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRS----EGRIVFDGQSLDtlnrRQLlpVRHRIQVVFQDPNssLNPRLN 380
Cdd:cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggttSGQILFNGQPRK----PDQ--FQKCVAYVRQDDI--LLPGLT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VlqiiEEGL------RVHQPTlSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:cd03234 98 V----RETLtytailRLPRKS-SDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTS 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 455 SLDKTVQAQILALLKSLQQKHRLAYIFIshdlHVVRA----LCHQVIVLRQGEVVEQG 508
Cdd:cd03234 173 GLDSFTALNLVSTLSQLARRNRIVILTI----HQPRSdlfrLFDRILLLSSGEIVYSG 226
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
9-236 |
3.24e-15 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 75.79 E-value: 3.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 9 ENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPpavyLSGDIRFHGESLLH-ASEQTLR 87
Cdd:PRK10253 11 EQLTLGYGK----YTVAENLTVEIPDGHFTAIIGPNGCGKS-TLLRTLSRLMTP----AHGHVWLDGEHIQHyASKEVAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 gvrgnKIAMIFQEPMV--SLNPLHTLEKQLYEVLSLHRGMRREAARAeMIGCLDRVGIRQASQRLRDyphQLSGGERQRV 165
Cdd:PRK10253 82 -----RIGLLAQNATTpgDITVQELVARGRYPHQPLFTRWRKEDEEA-VTKAMQATGITHLADQSVD---TLSGGQRQRA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 166 MIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
305-517 |
3.38e-15 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 75.50 E-value: 3.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLL----RLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPNssLNPRL 379
Cdd:COG4604 20 VSLTIPKGGITALIGPNGAGKST----LLsmisRLLPpDSGEVLVDGLDVATTPSREL---AKRLAILRQENH--INSRL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGlRV--HQPTLSgAQREQQVKAVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:COG4604 91 TVRELVAFG-RFpySKGRLT-AEDREIIDEAIAYLDLED-LADRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFTAP 517
Cdd:COG4604 168 MKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPE 227
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-234 |
4.30e-15 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 76.00 E-value: 4.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLsvgfRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTaLSILRLLPTPPAvylsGDIRFHGESLLH 80
Cdd:PRK13537 3 MSVAPIDFRNV----EKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTT-LRMLLGLTHPDA----GSISLCGEPVPS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 ASEQTLRgvrgnKIAMIFQepMVSLNPLHTLEKQLyEVLSLHRGMRREAARAEMIGCLDRVGIRQ-ASQRLRDyphqLSG 159
Cdd:PRK13537 74 RARHARQ-----RVGVVPQ--FDNLDPDFTVRENL-LVFGRYFGLSAAAARALVPPLLEFAKLENkADAKVGE----LSG 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqreLNMG--LLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK13537 142 GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL---LARGktILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
305-497 |
5.49e-15 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 73.42 E-value: 5.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSldtlnRRQLLPVRHRIQVVFQdpnsslnprLNVLQ 383
Cdd:NF040873 11 VDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRpTSGTVRRAGGA-----RVAYVPQRSEVPDSLP---------LTVRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQPTLSGAQRE--QQVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQ 461
Cdd:NF040873 77 LVAMGRWARRGLWRRLTRDdrAAVDDALERVGLA-DLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESR 155
|
170 180 190
....*....|....*....|....*....|....*.
gi 804913277 462 AQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVI 497
Cdd:NF040873 156 ERIIALLAEEHARGA-TVVVVTHDLELVRRADPCVL 190
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
23-504 |
9.04e-15 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 76.69 E-value: 9.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNA---ISLQVNAGETLALVGESGSGKSVtalsilrLLPTPPAVYL--SGDIRFHGESL-LHASEQTLRgvrgNKIAM 96
Cdd:PRK10982 9 PGVKAldnVNLKVRPHSIHALMGENGAGKST-------LLKCLFGIYQkdSGSILFQGKEIdFKSSKEALE----NGISM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 97 IFQEpmvsLNplHTLEKQLYEVLSLHR----GMRREAARA--EMIGCLDRVGIRQASqrlRDYPHQLSGGERQRVMIAMA 170
Cdd:PRK10982 78 VHQE----LN--LVLQRSVMDNMWLGRyptkGMFVDQDKMyrDTKAIFDELDIDIDP---RAKVATLSVSQMQMIEIAKA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 171 LLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRA-----DTLL 245
Cdd:PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLagltmDKII 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 246 SAPT-HPYTQKLlnsePTGDPVPlpagQAPLLEVDKLrvafpirkgilkrVVDHNVVVNNISFTLHPGETLGLVGESGSg 324
Cdd:PRK10982 228 AMMVgRSLTQRF----PDKENKP----GEVILEVRNL-------------TSLRQPSIRDVSFDLHKGEILGIAGLVGA- 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 325 KSTTGLALLRLIR--SEGRIVFDGQSLDtlNRRQLLPVRHRIQVVFQDPNSS-----LNPRLNVLQIIEEGLRVHQPTLS 397
Cdd:PRK10982 286 KRTDIVETLFGIRekSAGTITLHGKKIN--NHNANEAINHGFALVTEERRSTgiyayLDIGFNSLISNIRNYKNKVGLLD 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 398 GAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRl 477
Cdd:PRK10982 364 NSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK- 442
|
490 500
....*....|....*....|....*..
gi 804913277 478 AYIFISHDLHVVRALCHQVIVLRQGEV 504
Cdd:PRK10982 443 GIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
22-275 |
1.09e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 74.05 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAvylSGDIRFHGESLLHASEQTLrgvrGNKIAMIFQ 99
Cdd:PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKS----TLLKMLGrhQPPS---EGEILLDAQPLESWSSKAF----ARKVAYLPQ 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 100 EpmvsLNPLHTLekQLYEVLSLHR-------GMRREAARAEMIGCLDRVGIRQASQRLRDyphQLSGGERQRVMIAMALL 172
Cdd:PRK10575 93 Q----LPAAEGM--TVRELVAIGRypwhgalGRFGAADREKVEEAISLVGLKPLAHRLVD---SLSGGERQRAWIAMLVA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 173 TRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSAPthpy 252
Cdd:PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE---- 239
|
250 260
....*....|....*....|...
gi 804913277 253 TQKLLNSEPTGdPVPLPAGQAPL 275
Cdd:PRK10575 240 TLEQIYGIPMG-ILPHPAGAAPV 261
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
23-249 |
1.17e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 74.25 E-value: 1.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSVTALSILRLL-PTPPAVYLSGdirfhgesLLHASEQTLRGVRgNKIAMIFQEP 101
Cdd:PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLrPQKGKVLVSG--------IDTGDFSKLQGIR-KLVGIVFQNP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 102 mvslnplhtlEKQLyevlsLHRGMRREAARAEMIGCLDRVGIRQ------ASQRLRDY----PHQLSGGERQRVMIAMAL 171
Cdd:PRK13644 87 ----------ETQF-----VGRTVEEDLAFGPENLCLPPIEIRKrvdralAEIGLEKYrhrsPKTLSGGQGQCVALAGIL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 172 LTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVkKLADSVAVMQHGKCVENQRADTLLSAPT 249
Cdd:PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDVS 227
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-245 |
1.31e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 75.25 E-value: 1.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSV---GFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLlpTPPAVylsGDIRFHGES 77
Cdd:PRK13536 30 KASIPGSMSTVAIdlaGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM--TSPDA---GKITVLGVP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 78 LlhasEQTLRGVRGnKIAMIFQepMVSLNPLHTLEKQLYeVLSLHRGMRREAARAEMIGCLDRVGI-RQASQRLRDyphq 156
Cdd:PRK13536 105 V----PARARLARA-RIGVVPQ--FDNLDLEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLeSKADARVSD---- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVLEAGRKI 251
|
....*....
gi 804913277 237 ENQRADTLL 245
Cdd:PRK13536 252 AEGRPHALI 260
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
305-508 |
1.38e-14 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 76.91 E-value: 1.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRS-EGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP---NSSLNPRLN 380
Cdd:TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESaEGEIIIDGLNIAKIGLHDL---RFKITIIPQDPvlfSGSLRMNLD 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VL-QIIEEGLRVhqpTLSGAQREQQVKAvmMEVGLDPETrhrypAE----FSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:TIGR00957 1382 PFsQYSDEEVWW---ALELAHLKTFVSA--LPDKLDHEC-----AEggenLSVGQRQLVCLARALLRKTKILVLDEATAA 1451
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 804913277 456 LDKTVQAQILALLKSlqQKHRLAYIFISHDLHVVRALChQVIVLRQGEVVEQG 508
Cdd:TIGR00957 1452 VDLETDNLIQSTIRT--QFEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFG 1501
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
8-232 |
1.71e-14 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 72.68 E-value: 1.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLptppavylsgdirfhgesllhaseqtLR 87
Cdd:COG2401 31 LEAFGVELRVVE--RYVLRDLNLEIEPGEIVLIVGASGSGKS----TLLRLL--------------------------AG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRReaaraemigcLDRVGIRQASQRLRDYPHqLSGGERQRVMI 167
Cdd:COG2401 79 ALKGTPVAGCVDVPDNQFGREASLIDAIGRKGDFKDAVEL----------LNAVGLSDAVLWLRRFKE-LSTGQKFRFRL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 168 AMALLTRPELLIADEPTTALDVSVqAQILSL-LRELQRELNMGLLFITHNLSIVKKLADSVAVMQH 232
Cdd:COG2401 148 ALLLAERPKLLVIDEFCSHLDRQT-AKRVARnLQKLARRAGITLVVATHHYDVIDDLQPDLLIFVG 212
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
422-484 |
2.00e-14 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 71.03 E-value: 2.00e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 422 YP--AEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKslqqKHRLAYIFISH 484
Cdd:cd03223 86 YPwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK----ELGITVISVGH 146
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
8-236 |
2.23e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 73.62 E-value: 2.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVrpvVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHASEQTLR 87
Cdd:PRK13647 7 VEDLHFRYKDGTKA---LKGLSLSIPEGSKTALLGPNGAGKS-TLLLHLNGIYLPQ----RGRVKVMGREVNAENEKWVR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 gvrgNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLhrGMRREAARAEMIGCLDRVGIrqasQRLRDY-PHQLSGGERQRVM 166
Cdd:PRK13647 79 ----SKVGLVFQDPDDQVFSSTVWDDVAFGPVNM--GLDKDEVERRVEEALKAVRM----WDFRDKpPYHLSYGQKKRVA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 167 IAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVL 217
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
3-231 |
2.34e-14 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 72.44 E-value: 2.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENlsVGFrqQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLHAS 82
Cdd:PRK10247 5 SPLLQLQN--VGY--LAGDAKILNNISFSLRAGEFKLITGPSGCGKS-TLLKIVASLISPT----SGTLLFEGEDISTLK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRgvrgNKIAMIFQEPMVslnplhtLEKQLYEVLSLHRGMRREAA-RAEMIGCLDRVGIRQASqrLRDYPHQLSGGE 161
Cdd:PRK10247 76 PEIYR----QQVSYCAQTPTL-------FGDTVYDNLIFPWQIRNQQPdPAIFLDDLERFALPDTI--LTKNIAELSGGE 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKlADSVAVMQ 231
Cdd:PRK10247 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITLQ 211
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
10-236 |
2.86e-14 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 71.52 E-value: 2.86e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 10 NLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL--PTPPAVYLSGDIRFHGESLLHASEQTLR 87
Cdd:cd03233 8 NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCS----TLLKALanRTEGNVSVEGDIHYNGIPYKEFAEKYPG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GVrgnkiamIFqepmVSLNPLH----TLEKQLYEVLSLhrgmrreaaraemigcldrvgirQASQRLRDyphqLSGGERQ 163
Cdd:cd03233 84 EI-------IY----VSEEDVHfptlTVRETLDFALRC-----------------------KGNEFVRG----ISGGERK 125
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLS-IVKKLADSVAVMQHGKCV 236
Cdd:cd03233 126 RVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASdEIYDLFDKVLVLYEGRQI 199
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
305-509 |
3.07e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 74.10 E-value: 3.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRqllpVRHRIQVVFQDPNssLNPRLNVlq 383
Cdd:PRK13536 60 LSFTVASGECFGLLGPNGAGKSTIARMILGMTSpDAGKITVLGVPVPARARL----ARARIGVVPQFDN--LDLEFTV-- 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iiEEGLRVHQPTLSGAQRE-QQVKAVMMEVG-LDPETRHRYpAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQ 461
Cdd:PRK13536 132 --RENLLVFGRYFGMSTREiEAVIPSLLEFArLESKADARV-SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 804913277 462 AQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQ 509
Cdd:PRK13536 209 HLIWERLRSLLARGK-TILLTTHFMEEAERLCDRLCVLEAGRKIAEGR 255
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-237 |
3.50e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 75.10 E-value: 3.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLLPTppavylSGDIRfHGESLlha 81
Cdd:COG0488 314 KVLELEGLSKSYGD----KTLLDDLSLRIDRGDRIGLIGPNGAGKS-TLLKLLagELEPD------SGTVK-LGETV--- 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 seqtlrgvrgnKIAMIFQEPMvSLNPlhtlEKQLYEVLS-LHRGMRREAARaemiGCLDRVGIRQAsqRLRDYPHQLSGG 160
Cdd:COG0488 379 -----------KIGYFDQHQE-ELDP----DKTVLDELRdGAPGGTEQEVR----GYLGRFLFSGD--DAFKPVGVLSGG 436
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQrelnmG-LLFITHNLSIVKKLADSVAVMQHGKCVE 237
Cdd:COG0488 437 EKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEALDDFP-----GtVLLVSHDRYFLDRVATRILEFEDGGVRE 509
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
6-233 |
4.67e-14 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 74.69 E-value: 4.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQHvrPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPtppavYLSGDIRFHGESLLHASEQT 85
Cdd:TIGR01842 317 LSVENVTIVPPGGKK--PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP-----PTSGSVRLDGADLKQWDRET 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LrgvrGNKIAMIFQEpmVSLNPlHTLEKQLYEvlslhrgMRR--------EAARA----EMIGCLDR-----VGIRQASq 148
Cdd:TIGR01842 390 F----GKHIGYLPQD--VELFP-GTVAENIAR-------FGEnadpekiiEAAKLagvhELILRLPDgydtvIGPGGAT- 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 149 rlrdyphqLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVkKLADSVA 228
Cdd:TIGR01842 455 --------LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLL-GCVDKIL 524
|
....*
gi 804913277 229 VMQHG 233
Cdd:TIGR01842 525 VLQDG 529
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1-247 |
4.89e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 72.22 E-value: 4.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQhvrPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESllh 80
Cdd:PRK15056 2 MQQAGIVVNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-----SGKISILGQP--- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 aseqTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAA---RAEMIGCLDRVGirqasqrLRDYPH-- 155
Cdd:PRK15056 71 ----TRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKkrdRQIVTAALARVD-------MVEFRHrq 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 --QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADsVAVMQHG 233
Cdd:PRK15056 140 igELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCD-YTVMVKG 217
|
250
....*....|....
gi 804913277 234 KCVENQRADTLLSA 247
Cdd:PRK15056 218 TVLASGPTETTFTA 231
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
28-234 |
5.55e-14 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 73.53 E-value: 5.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvtalSILRLLPTPPAVyLSGDIrFHGESLLHASEQTLRGVrgnkiAMIFQEpmvslnp 107
Cdd:PRK11000 22 INLDIHEGEFVVFVGPSGCGKS----TLLRMIAGLEDI-TSGDL-FIGEKRMNDVPPAERGV-----GMVFQS------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 108 lhtleKQLYEVLSLHRGMR-----REAARAEMIGCLDRVG-IRQASQRLRDYPHQLSGGERQRVMIAMALLTRPELLIAD 181
Cdd:PRK11000 84 -----YALYPHLSVAENMSfglklAGAKKEEINQRVNQVAeVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 804913277 182 EPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
15-248 |
6.47e-14 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 74.36 E-value: 6.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 15 FRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALS-ILRLLPTPpavylSGDIRFHGESLLHASEQTLRGvrgnK 93
Cdd:PRK10789 321 FTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKS-TLLSlIQRHFDVS-----EGDIRFHDIPLTKLQLDSWRS----R 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 94 IAMIFQEPM-----VSLN-----PLHTLEK--QLYEVLSLHRGMRREAAraemiGCLDRVGIRQAsqrlrdyphQLSGGE 161
Cdd:PRK10789 391 LAVVSQTPFlfsdtVANNialgrPDATQQEieHVARLASVHDDILRLPQ-----GYDTEVGERGV---------MLSGGQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNmgLLFITHNLSIVKKlADSVAVMQHGKCVENQRA 241
Cdd:PRK10789 457 KQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRT--VIISAHRLSALTE-ASEILVMQHGHIAQRGNH 533
|
....*..
gi 804913277 242 DTLLSAP 248
Cdd:PRK10789 534 DQLAQQS 540
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
5-270 |
6.66e-14 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 72.17 E-value: 6.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPA---VYLSGDIRFHGESLLHA 81
Cdd:PRK13547 1 MLTADHLHVARRH----RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAprgARVTGDVTLNGEPLAAI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRGVRgnkiAMIFQ--EPMVSLNplhtlekqLYEVLSLhrGMRREAARAEMIGCLDRVGIRQASQRL-------RD 152
Cdd:PRK13547 77 DAPRLARLR----AVLPQaaQPAFAFS--------AREIVLL--GRYPHARRAGALTHRDGEIAWQALALAgatalvgRD 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 153 YPhQLSGGERQRVMIAMAL---------LTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKL 223
Cdd:PRK13547 143 VT-TLSGGELARVQFARVLaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARH 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 804913277 224 ADSVAVMQHGKCV-ENQRADTLLSAP---THPYTQKLLNSEPTGDPVPLPA 270
Cdd:PRK13547 222 ADRIAMLADGAIVaHGAPADVLTPAHiarCYGFAVRLVDAGDGVPPVIVPA 272
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
6-234 |
6.72e-14 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 74.01 E-value: 6.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLLHASEQT 85
Cdd:COG4618 331 LSVENLTVVPPGSK--RPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPP-----TAGSVRLDGADLSQWDREE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRG---------------VRGNkIAMiFQEPmvslNPlhtlEKqlyeVLslhrgmrrEAARA----EMIgcldrvgirqa 146
Cdd:COG4618 404 LGRhigylpqdvelfdgtIAEN-IAR-FGDA----DP----EK----VV--------AAAKLagvhEMI----------- 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 147 sQRLRD-Y-------PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLS 218
Cdd:COG4618 451 -LRLPDgYdtrigegGARLSGGQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRAL-KARGATVVVITHRPS 528
|
250
....*....|....*.
gi 804913277 219 IVkKLADSVAVMQHGK 234
Cdd:COG4618 529 LL-AAVDKLLVLRDGR 543
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
8-236 |
7.53e-14 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 71.27 E-value: 7.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQqhvrPVVNAISLQVNAGETLALVGESGSGKSvTALSIL-RLLPtppavYLSGDIRFHGESLLHASEQTL 86
Cdd:COG4604 4 IKNVSKRYGGK----VVLDDVSLTIPKGGITALIGPNGAGKS-TLLSMIsRLLP-----PDSGEVLVDGLDVATTPSREL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 87 rgvrGNKIAMIFQEPMVSLNpLhTLEkqlyEVLSL-----HRGMRREAARA---EMIGCLDRVGIRQAsqrlrdYPHQLS 158
Cdd:COG4604 74 ----AKRLAILRQENHINSR-L-TVR----ELVAFgrfpySKGRLTAEDREiidEAIAYLDLEDLADR------YLDELS 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:COG4604 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVV 215
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
272-521 |
1.12e-13 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 71.17 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 272 QAPLLEVDKLRVAFpirKGILkrvvdhnvVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLD 350
Cdd:PRK11300 2 SQPLLSVSGLMMRF---GGLL--------AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKpTGGTILLRGQHIE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 351 TLNRRQLlpVRHRIQVVFQdpNSSLNPRLNVLQ--IIEEGLRVHQPTLSG---------AQREQQVKAVMM--EVGLDpE 417
Cdd:PRK11300 71 GLPGHQI--ARMGVVRTFQ--HVRLFREMTVIEnlLVAQHQQLKTGLFSGllktpafrrAESEALDRAATWleRVGLL-E 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 418 TRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVI 497
Cdd:PRK11300 146 HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIY 225
|
250 260
....*....|....*....|....*.
gi 804913277 498 VLRQGEVVEQGQCERVFTAPQ--QAY 521
Cdd:PRK11300 226 VVNQGTPLANGTPEEIRNNPDviKAY 251
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
29-457 |
1.13e-13 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 73.13 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 29 SLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLLHASEQTLRGVrgnkIAMIFQE---PMVSL 105
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPL-----LSGERQSQFSHITRLSFEQLQKL----VSDEWQRnntDMLSP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 106 NPLHTlEKQLYEVLSLHRgmrREAARAEMIGCLdrVGIRQASQRLRDYphqLSGGERQRVMIAMALLTRPELLIADEPTT 185
Cdd:PRK10938 94 GEDDT-GRTTAEIIQDEV---KDPARCEQLAQQ--FGITALLDRRFKY---LSTGETRKTLLCQALMSEPDLLILDEPFD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 186 ALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLSaptHPYTQKLLNSEPTGDp 265
Cdd:PRK10938 165 GLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ---QALVAQLAHSEQLEG- 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 266 VPLPAGQAPL----LEVDKLRvaFPIRKGILKrvVDHNVVVNNISFTLHPGETLGLVGESGSGKSTtglaLLRLIRSEGR 341
Cdd:PRK10938 240 VQLPEPDEPSarhaLPANEPR--IVLNNGVVS--YNDRPILHNLSWQVNPGEHWQIVGPNGAGKST----LLSLITGDHP 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 342 ivfDGQSLD-TLNRRQ------LLPVRHRIQVVfqdpNSSL--NPRLN--VLQIIEEG----LRVHQpTLSGAQReQQVK 406
Cdd:PRK10938 312 ---QGYSNDlTLFGRRrgsgetIWDIKKHIGYV----SSSLhlDYRVStsVRNVILSGffdsIGIYQ-AVSDRQQ-KLAQ 382
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 407 AVMMEVGLDPETRHRYPAEFSGGQrQRIA-VARALILKPSLIILDEPTSSLD 457
Cdd:PRK10938 383 QWLDILGIDKRTADAPFHSLSWGQ-QRLAlIVRALVKHPTLLILDEPLQGLD 433
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
23-233 |
1.26e-13 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 72.18 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLPTPPAVyLSGDIRFhGESLLHASEQTLRGvrgnkIAMIFQEpm 102
Cdd:PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKS----TLLRMVAGLERI-TSGEIWI-GGRVVNELEPADRD-----IAMVFQN-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 103 VSLNPLHTLEKQLYEVLSLhRGM------RR--EAARA-EMIGCLDRvgirqasqrlrdYPHQLSGGERQRVMIAMALLT 173
Cdd:PRK11650 85 YALYPHMSVRENMAYGLKI-RGMpkaeieERvaEAARIlELEPLLDR------------KPRELSGGQRQRVAMGRAIVR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 174 RPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHG 233
Cdd:PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGG 211
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
156-498 |
1.29e-13 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 73.28 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMqHGKc 235
Cdd:COG1245 212 ELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEE-GKYVLVVEHDLAILDYLADYVHIL-YGE- 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 236 venqradtllsaP------THPY-TQKLLNSEPTG-----------DPV-----PLPAGQ--APLLEVDKLRVAFPirkg 290
Cdd:COG1245 289 ------------PgvygvvSKPKsVRVGINQYLDGylpeenvrirdEPIefevhAPRREKeeETLVEYPDLTKSYG---- 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 291 ilkrvvdhnvvvnniSFTL-------HPGETLGLVGESGSGKSTtglaLLRLIrsEGRIVFDGQSLDTlnrrqLLPVRHR 363
Cdd:COG1245 353 ---------------GFSLeveggeiREGEVLGIVGPNGIGKTT----FAKIL--AGVLKPDEGEVDE-----DLKISYK 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 364 IQVVFQDPNSSlnprlnvlqiIEEGLR-VHQPTLSGAQREQQvkaVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALIL 442
Cdd:COG1245 407 PQYISPDYDGT----------VEEFLRsANTDDFGSSYYKTE---IIKPLGLEK-LLDKNVKDLSGGELQRVAIAACLSR 472
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 443 KPSLIILDEPTSSLDktVQAQILA--LLKSLQQKHRLAYIFISHDLHVVRALCHQVIV 498
Cdd:COG1245 473 DADLYLLDEPSAHLD--VEQRLAVakAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
317-516 |
1.33e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 73.21 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 317 LVGESGSGKSTtgLALLRL---IRSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPnsslnprlnvlQIIEEGLRVHQ 393
Cdd:PRK10790 372 LVGHTGSGKST--LASLLMgyyPLTEGEIRLDGRPLSSLSHSVL---RQGVAMVQQDP-----------VVLADTFLANV 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 394 pTLSGAQREQQVKAVMMEVGLD------PETRHRYPAE----FSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQ 463
Cdd:PRK10790 436 -TLGRDISEEQVWQALETVQLAelarslPDGLYTPLGEqgnnLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 804913277 464 ILALLKSLQQKHRLayIFISHDLH-VVRAlcHQVIVLRQGEVVEQGQCERVFTA 516
Cdd:PRK10790 515 IQQALAAVREHTTL--VVIAHRLStIVEA--DTILVLHRGQAVEQGTHQQLLAA 564
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
6-215 |
1.50e-13 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 68.72 E-value: 1.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL----PtppavYLSGDIRFHgesllha 81
Cdd:cd03223 1 IELENLSLATPDG---RVLLKDLSFEIKPGDRLLITGPSGTGKS----SLFRALaglwP-----WGSGRIGMP------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 seqtlrgvRGNKIAMIFQEPMVslnPLHTLEKQLYevlslhrgmrreaaraemigcldrvgirqasqrlrdYP--HQLSG 159
Cdd:cd03223 62 --------EGEDLLFLPQRPYL---PLGTLREQLI------------------------------------YPwdDVLSG 94
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQrelnMGLLFITH 215
Cdd:cd03223 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG----ITVISVGH 146
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
35-486 |
1.55e-13 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 72.92 E-value: 1.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 35 GETLALVGESGSGKSvTALSILrllptppavylSGDI------------------RFHGESLlhaseQT-LRGVRGN--- 92
Cdd:PRK13409 99 GKVTGILGPNGIGKT-TAVKIL-----------SGELipnlgdyeeepswdevlkRFRGTEL-----QNyFKKLYNGeik 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 93 ---KIAMIFQEPMVSLNPLHTLEKQLYEvlslhRGMRRE-AARAEMIGCLDRvGIRQasqrlrdyphqLSGGERQRVMIA 168
Cdd:PRK13409 162 vvhKPQYVDLIPKVFKGKVRELLKKVDE-----RGKLDEvVERLGLENILDR-DISE-----------LSGGELQRVAIA 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 169 MALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMglLFITHNLSIVKKLADSVAVMqHGKcvenqradtllsaP 248
Cdd:PRK13409 225 AALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYV--LVVEHDLAVLDYLADNVHIA-YGE-------------P 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 249 ------THPY-TQKLLN---------------SEP----TGDPVPLPAGQaPLLEVDKLRVAFPirkgilkrvvdhnvvv 302
Cdd:PRK13409 289 gaygvvSKPKgVRVGINeylkgylpeenmrirPEPiefeERPPRDESERE-TLVEYPDLTKKLG---------------- 351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 303 nniSFTL-------HPGETLGLVGESGSGKSTtglaLLRLIrsEGRIVFDGQSLDTlnrrqLLPVRHRIQVVFQDPN--- 372
Cdd:PRK13409 352 ---DFSLeveggeiYEGEVIGIVGPNGIGKTT----FAKLL--AGVLKPDEGEVDP-----ELKISYKPQYIKPDYDgtv 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 373 ----SSLNPRLNVLQIIEE---GLRVHQptlsgaqreqqvkavMMEvgldpetrhRYPAEFSGGQRQRIAVARALILKPS 445
Cdd:PRK13409 418 edllRSITDDLGSSYYKSEiikPLQLER---------------LLD---------KNVKDLSGGELQRVAIAACLSRDAD 473
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 804913277 446 LIILDEPTSSLDktVQAQILA--LLKSLQQKHRLAYIFISHDL 486
Cdd:PRK13409 474 LYLLDEPSAHLD--VEQRLAVakAIRRIAEEREATALVVDHDI 514
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
28-248 |
1.75e-13 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 72.96 E-value: 1.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSVTALSILRLLPtppavYlSGDIRFHGESLLHASEQTLRgvrgNKIAMIFQEPmvslnp 107
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP-----Y-QGSLKINGIELRELDPESWR----KHLSWVGQNP------ 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 108 lHTLEKQLYEVLSLHRGmrrEAARAEMIGCLDRVGIRQASQRLR---DYPHQ-----LSGGERQRVMIAMALLTRPELLI 179
Cdd:PRK11174 433 -QLPHGTLRDNVLLGNP---DASDEQLQQALENAWVSEFLPLLPqglDTPIGdqaagLSVGQAQRLALARALLQPCQLLL 508
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 180 ADEPTTALDVSVQAQILSLLRELQRELNmgLLFITHNLSIVKKLaDSVAVMQHGKCVENQRADTLLSAP 248
Cdd:PRK11174 509 LDEPTASLDAHSEQLVMQALNAASRRQT--TLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAELSQAG 574
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
305-468 |
2.51e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 69.06 E-value: 2.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLN---RRQLLPVRHRiqvvfqdpnSSLN 376
Cdd:PRK13538 20 LSFTLNAGELVQIEGPNGAGKTS----LLRILaglarPDAGEVLWQGEPIRRQRdeyHQDLLYLGHQ---------PGIK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVlqiiEEGLRVHQPtLSGAQREQQVKAVMMEVGLdpETRHRYPAE-FSGGQRQRIAVARALILKPSLIILDEPTSS 455
Cdd:PRK13538 87 TELTA----LENLRFYQR-LHGPGDDEALWEALAQVGL--AGFEDVPVRqLSAGQQRRVALARLWLTRAPLWILDEPFTA 159
|
170
....*....|...
gi 804913277 456 LDKTVQAQILALL 468
Cdd:PRK13538 160 IDKQGVARLEALL 172
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
305-492 |
2.64e-13 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 69.22 E-value: 2.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRsegrivfdGQSLDTlnrrqllPVRHRIQVvfqdPNSSLNPRLNVLQI 384
Cdd:COG2401 49 LNLEIEPGEIVLIVGASGSGKST----LLRLLA--------GALKGT-------PVAGCVDV----PDNQFGREASLIDA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 IeegLRVHQPTlsgaqreqQVKAVMMEVGL-DPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVqAQ 463
Cdd:COG2401 106 I---GRKGDFK--------DAVELLNAVGLsDAVLWLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQT-AK 173
|
170 180 190
....*....|....*....|....*....|
gi 804913277 464 ILAL-LKSLQQKHRLAYIFISHDLHVVRAL 492
Cdd:COG2401 174 RVARnLQKLARRAGITLVVATHHYDVIDDL 203
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
5-246 |
3.04e-13 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 69.54 E-value: 3.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGE--SLLHAS 82
Cdd:PRK10895 3 TLTAKNLAKAYKG----RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD-----AGNIIIDDEdiSLLPLH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRGvrgnkIAMIFQEPmvSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIrqasQRLRDYPHQ-LSGGE 161
Cdd:PRK10895 74 ARARRG-----IGYLPQEA--SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI----EHLRDSMGQsLSGGE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRA 241
Cdd:PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTP 221
|
....*
gi 804913277 242 DTLLS 246
Cdd:PRK10895 222 TEILQ 226
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
276-508 |
4.53e-13 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 67.94 E-value: 4.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 276 LEVDKLRVAFpIRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTTGLALL---RLIRSEGRIVFDGQslDTL 352
Cdd:cd03217 1 LEIKDLHVSV-GGKEILKG----------VNLTIKKGEVHALMGPNGSGKSTLAKTIMghpKYEVTEGEILFKGE--DIT 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 353 NrrqlLPVRHR----IQVVFQDPnsslnprlnvlqiieeglrvhqPTLSGAQREQQVKAVmmEVGldpetrhrypaeFSG 428
Cdd:cd03217 68 D----LPPEERarlgIFLAFQYP----------------------PEIPGVKNADFLRYV--NEG------------FSG 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 429 GQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVI-VLRQGEVVEQ 507
Cdd:cd03217 108 GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK-SVLIITHYQRLLDYIKPDRVhVLYDGRIVKS 186
|
.
gi 804913277 508 G 508
Cdd:cd03217 187 G 187
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
22-200 |
4.67e-13 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 67.90 E-value: 4.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAvylSGDIRFHGESLlhaseQTLRGVRGNKIAMIFQ 99
Cdd:cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKT----TLLRILAglSPPL---AGRVLLNGGPL-----DFQRDSIARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 100 EPMVslnplhtleKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQasqrLRDYP-HQLSGGERQRVMIAMALLTRPELL 178
Cdd:cd03231 81 APGI---------KTTLSVLENLRFWHADHSDEQVEEALARVGLNG----FEDRPvAQLSAGQQRRVALARLLLSGRPLW 147
|
170 180
....*....|....*....|..
gi 804913277 179 IADEPTTALDVSVQAQILSLLR 200
Cdd:cd03231 148 ILDEPTTALDKAGVARFAEAMA 169
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
5-233 |
4.72e-13 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 69.27 E-value: 4.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLptppAVYLSGD--IRFHGESLLHAS 82
Cdd:PRK09984 4 IIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKS----TLLRHL----SGLITGDksAGSHIELLGRTV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQT---LRGVRGNK--IAMIFQEPMVsLNPLHTLEKQLYEVLS-----------LHRGMRREAARAemigcLDRVGIRQ- 145
Cdd:PRK09984 72 QREgrlARDIRKSRanTGYIFQQFNL-VNRLSVLENVLIGALGstpfwrtcfswFTREQKQRALQA-----LTRVGMVHf 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 146 ASQRLRdyphQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLAD 225
Cdd:PRK09984 146 AHQRVS----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCE 221
|
....*...
gi 804913277 226 SVAVMQHG 233
Cdd:PRK09984 222 RIVALRQG 229
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
305-490 |
4.80e-13 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 71.98 E-value: 4.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVF-DGQSLDTLNRRQLlpvRHRIQVVFQDP----NSS 374
Cdd:PTZ00265 404 LNFTLTEGKTYAFVGESGCGKST----ILKLIErlydpTEGDIIInDSHNLKDINLKWW---RSKIGVVSQDPllfsNSI 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 375 LNP------RLNVLQIIEEGLRVH-QPTLSGAQREQQVKAV------MMEVGLDP----ETRHRY--------------- 422
Cdd:PTZ00265 477 KNNikyslySLKDLEALSNYYNEDgNDSQENKNKRNSCRAKcagdlnDMSNTTDSneliEMRKNYqtikdsevvdvskkv 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 423 --------------------PAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFI 482
Cdd:PTZ00265 557 lihdfvsalpdkyetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIII 636
|
....*...
gi 804913277 483 SHDLHVVR 490
Cdd:PTZ00265 637 AHRLSTIR 644
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
305-506 |
1.07e-12 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 70.20 E-value: 1.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglalLRLIRS--------EGRIVFDGQsldtlnrrqllpVRHriqvvFQDPNSSln 376
Cdd:NF040905 20 VNLSVREGEIHALCGENGAGKST-----LMKVLSgvyphgsyEGEILFDGE------------VCR-----FKDIRDS-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLqIIeeglrvHQ-----PTLSGAQ-----REQQVKAV-------------MMEVGLD--PETRhryPAEFSGGQR 431
Cdd:NF040905 76 EALGIV-II------HQelaliPYLSIAEniflgNERAKRGVidwnetnrrarelLAKVGLDesPDTL---VTDIGVGKQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 432 QRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLqQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVE 506
Cdd:NF040905 146 QLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDGRTIE 219
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
6-234 |
1.26e-12 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 66.72 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGF-RQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSIL-RLLPTPPAVYLSGDIRFHGES--LLHA 81
Cdd:cd03250 1 ISVEDASFTWdSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLgELEKLSGSVSVPGSIAYVSQEpwIQNG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SeqtlrgVRGNkiaMIFQEPMvslnplhtlEKQLYE-VLslhrgmrrEAAraemigCLDR------------VGIRQASq 148
Cdd:cd03250 81 T------IREN---ILFGKPF---------DEERYEkVI--------KAC------ALEPdleilpdgdlteIGEKGIN- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 149 rlrdyphqLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLreLQRELNMG--LLFITHNLSIVKKlADS 226
Cdd:cd03250 128 --------LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC--ILGLLLNNktRILVTHQLQLLPH-ADQ 196
|
....*...
gi 804913277 227 VAVMQHGK 234
Cdd:cd03250 197 IVVLDNGR 204
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
22-201 |
1.63e-12 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 66.37 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAvylSGDIRFHGESLLHASEQTLRgvrgnkiAMIFQ 99
Cdd:PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKT----SLLRILAglARPD---AGEVLWQGEPIRRQRDEYHQ-------DLLYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 100 EPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAemigCLDRVGIRqasqRLRDYP-HQLSGGERQRVMIAMALLTRPELL 178
Cdd:PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWE----ALAQVGLA----GFEDVPvRQLSAGQQRRVALARLWLTRAPLW 151
|
170 180
....*....|....*....|...
gi 804913277 179 IADEPTTALDVSVQAQILSLLRE 201
Cdd:PRK13538 152 ILDEPFTAIDKQGVARLEALLAQ 174
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
305-505 |
1.76e-12 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 69.37 E-value: 1.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLNRRQLLpvRHRIQVVFQDPNSSLnpRL 379
Cdd:PRK10982 17 VNLKVRPHSIHALMGENGAGKST----LLKCLfgiyqKDSGSILFQGKEIDFKSSKEAL--ENGISMVHQELNLVL--QR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQII------EEGLRVHQptlsgAQREQQVKAVMMEVGLDPETRHRYpAEFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:PRK10982 89 SVMDNMwlgrypTKGMFVDQ-----DKMYRDTKAIFDELDIDIDPRAKV-ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 454 SSLDKTVQAQILALLKSLQQKHrLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:PRK10982 163 SSLTEKEVNHLFTIIRKLKERG-CGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
305-501 |
1.81e-12 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 67.45 E-value: 1.81e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQsldtlnrrqlLPVRHRIQVVFQDPNSSLNprLNVLQ 383
Cdd:PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVApDEGVIKRNGK----------LRIGYVPQKLYLDTTLPLT--VNRFL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQ--PTLSGAQREQQVKAVMMEVgldpetrhrypaefSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQ 461
Cdd:PRK09544 91 RLRPGTKKEDilPALKRVQAGHLIDAPMQKL--------------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 804913277 462 AQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQ 501
Cdd:PRK09544 157 VALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
305-504 |
1.82e-12 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 70.32 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLN----RRQLLPVRHRIQVVFQDPNSSLNPRln 380
Cdd:TIGR01271 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTlqtwRKAFGVIPQKVFIFSGTFRKNLDPY-- 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 vlqiieeglrvhqptlsgAQ-REQQVKAVMMEVGLDpETRHRYPAE-----------FSGGQRQRIAVARALILKPSLII 448
Cdd:TIGR01271 1316 ------------------EQwSDEEIWKVAEEVGLK-SVIEQFPDKldfvlvdggyvLSNGHKQLMCLARSILSKAKILL 1376
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 449 LDEPTSSLDKtVQAQILAllKSLQQKHRLAYIFISHdlHVVRAL--CHQVIVLRQGEV 504
Cdd:TIGR01271 1377 LDEPSAHLDP-VTLQIIR--KTLKQSFSNCTVILSE--HRVEALleCQQFLVIEGSSV 1429
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
305-523 |
2.01e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 70.15 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDP-------NSSLN 376
Cdd:PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELErGRILIDGCDISKFGLMDL---RKVLGIIPQAPvlfsgtvRFNLD 1334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 P--RLNVLQIIEEGLRVHqptLSGAQREQqvkavmmEVGLDPETrhrypAE----FSGGQRQRIAVARALILKPSLIILD 450
Cdd:PLN03130 1335 PfnEHNDADLWESLERAH---LKDVIRRN-------SLGLDAEV-----SEagenFSVGQRQLLSLARALLRRSKILVLD 1399
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 451 EPTSSLDKTVQAQIlalLKSLQQKHR-LAYIFISHDLHVVRAlCHQVIVLRQGEVVEQGQCERVFTAPQQAYTR 523
Cdd:PLN03130 1400 EATAAVDVRTDALI---QKTIREEFKsCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEGSAFSK 1469
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
305-504 |
3.62e-12 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 66.80 E-value: 3.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDpnsslnprlnvLQI 384
Cdd:cd03289 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKW---RKAFGVIPQK-----------VFI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 IEEGLRVH-QPtlSGAQREQQVKAVMMEVGLDpETRHRYPAE-----------FSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:cd03289 89 FSGTFRKNlDP--YGKWSDEEIWKVAEEVGLK-SVIEQFPGQldfvlvdggcvLSHGHKQLMCLARSVLSKAKILLLDEP 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 804913277 453 TSSLDKtVQAQILAllKSLQQKHRLAYIFISHdlHVVRAL--CHQVIVLRQGEV 504
Cdd:cd03289 166 SAHLDP-ITYQVIR--KTLKQAFADCTVILSE--HRIEAMleCQRFLVIEENKV 214
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-246 |
1.07e-11 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 64.90 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 1 MTSPLLAIENLSVGFRQQQhvrpVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLPTPPAVyLSGDIRFHGESLLH 80
Cdd:PRK11614 1 MEKVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKT----TLLGTLCGDPRA-TSGRIVFDGKDITD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 81 AseQTLRGVRgNKIAMIFQEpmvslnplhtleKQLYEVLSLHRGMRREAARAEMIGCLDRVG-IRQASQRLRDYPHQ--- 156
Cdd:PRK11614 72 W--QTAKIMR-EAVAIVPEG------------RRVFSRMTVEENLAMGGFFAERDQFQERIKwVYELFPRLHERRIQrag 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 -LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKC 235
Cdd:PRK11614 137 tMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHV 215
|
250
....*....|.
gi 804913277 236 VENQRADTLLS 246
Cdd:PRK11614 216 VLEDTGDALLA 226
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
305-491 |
1.18e-11 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 64.05 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVFDGQSLDTLN---RRQLLPVRHRiqvvfqdpnSSLN 376
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTT----LLRILaglspPLAGRVLLNGGPLDFQRdsiARGLLYLGHA---------PGIK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLqiieEGLRVHQPTLSGAQREQqvkaVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:cd03231 86 TTLSVL----ENLRFWHADHSDEQVEE----ALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156
|
170 180 190
....*....|....*....|....*....|....*
gi 804913277 457 DKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRA 491
Cdd:cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEA 191
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
4-236 |
2.02e-11 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 66.44 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--RLlptpPAVYLSGDIRFHGESLlha 81
Cdd:PLN03211 63 RILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKS-TLLNALagRI----QGNNFTGTILANNRKP--- 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRgvrgnKIAMIFQEPMvsLNPLHTLEKQLY--EVLSLHRGMRREAARAEMIGCLDRVGIRQASQRL--RDYPHQL 157
Cdd:PLN03211 135 TKQILK-----RTGFVTQDDI--LYPHLTVRETLVfcSLLRLPKSLTKQEKILVAESVISELGLTKCENTIigNSFIRGI 207
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PLN03211 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
305-508 |
2.16e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 63.05 E-value: 2.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLI--------RSEGRIVFDGQSLDTLNRrqllpvRHRIQVVFQDPNSSLN 376
Cdd:cd03233 26 FSGVVKPGEMVLVLGRPGSGCST----LLKALanrtegnvSVEGDIHYNGIPYKEFAE------KYPGEIIYVSEEDVHF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNVLQIIEEGLRvhqptlsgAQREQQVKAVmmevgldpetrhrypaefSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:cd03233 96 PTLTVRETLDFALR--------CKGNEFVRGI------------------SGGERKRVSIAEALVSRASVLCWDNSTRGL 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 457 DKTVQAQILALLKSLQQKHRLAYIFI----SHDLHvvrALCHQVIVLRQGEVVEQG 508
Cdd:cd03233 150 DSSTALEILKCIRTMADVLKTTTFVSlyqaSDEIY---DLFDKVLVLYEGRQIYYG 202
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
305-523 |
4.03e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 65.82 E-value: 4.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRL--IRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPN--SSLNPR-- 378
Cdd:PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFydLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNefSLTKEGgs 1266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 --------------LNVLQIIEEGLR---------VHQPTL-------------SGAQREQqVKAVMMEVGLD------P 416
Cdd:PTZ00265 1267 gedstvfknsgkilLDGVDICDYNLKdlrnlfsivSQEPMLfnmsiyenikfgkEDATRED-VKRACKFAAIDefieslP 1345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 417 ETRHR----YPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRAl 492
Cdd:PTZ00265 1346 NKYDTnvgpYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR- 1424
|
250 260 270
....*....|....*....|....*....|....*.
gi 804913277 493 CHQVIVL----RQGEVVE-QGQCERVFTAPQQAYTR 523
Cdd:PTZ00265 1425 SDKIVVFnnpdRTGSFVQaHGTHEELLSVQDGVYKK 1460
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
274-511 |
4.16e-11 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 63.51 E-value: 4.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 274 PLLEVDKLRVA---FPIRKGIlkrvvdhnvvvnniSFTLHPGETLGLVGESGSGKSTtglaLLRLIRS-------EGRIV 343
Cdd:CHL00131 6 PILEIKNLHASvneNEILKGL--------------NLSINKGEIHAIMGPNGSGKST----LSKVIAGhpaykilEGDIL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 344 FDGQS---LDTLNRRQLlpvrhRIQVVFQDP----------------NS--------SLNPrLNVLQIIEEGLRVhqptl 396
Cdd:CHL00131 68 FKGESildLEPEERAHL-----GIFLAFQYPieipgvsnadflrlayNSkrkfqglpELDP-LEFLEIINEKLKL----- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 397 sgaqreqqvkavmmeVGLDPETRHRYPAE-FSGGQRQRIAVARALILKPSLIILDEPTSSLD----KTVQAQILALLKSL 471
Cdd:CHL00131 137 ---------------VGMDPSFLSRNVNEgFSGGEKKRNEILQMALLDSELAILDETDSGLDidalKIIAEGINKLMTSE 201
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 804913277 472 QqkhrlAYIFISH-----DlHVVRALCHqviVLRQGEVVEQGQCE 511
Cdd:CHL00131 202 N-----SIILITHyqrllD-YIKPDYVH---VMQNGKIIKTGDAE 237
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
13-261 |
4.16e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 65.77 E-value: 4.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 13 VGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHASEQTLRGVrgn 92
Cdd:PLN03232 1240 VHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE-----KGRIMIDDCDVAKFGLTDLRRV--- 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 93 kIAMIFQEPMV-------SLNPL--HTlEKQLYEvlSLHRGMRREAARAEMIGcLDrvgirqasQRLRDYPHQLSGGERQ 163
Cdd:PLN03232 1312 -LSIIPQSPVLfsgtvrfNIDPFseHN-DADLWE--ALERAHIKDVIDRNPFG-LD--------AEVSEGGENFSVGQRQ 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMglLFITHNLSIVKKlADSVAVMQHGKCVENQRADT 243
Cdd:PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM--LVIAHRLNTIID-CDKILVLSSGQVLEYDSPQE 1455
|
250
....*....|....*...
gi 804913277 244 LLSAPTHPYTQKLLNSEP 261
Cdd:PLN03232 1456 LLSRDTSAFFRMVHSTGP 1473
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-234 |
6.47e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 64.46 E-value: 6.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQQHvRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPA--VYLSG---DIRFHGESLL 79
Cdd:TIGR02633 257 ILEARNLTCWDVINPH-RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEgnVFINGkpvDIRNPAQAIR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 80 HaseqtlrgvrgnKIAMIFQE-------PMVSLNPLHTLEkqlyeVLSLHRGMRREAARAEMiGCldrvgIRQASQRLR- 151
Cdd:TIGR02633 336 A------------GIAMVPEDrkrhgivPILGVGKNITLS-----VLKSFCFKMRIDAAAEL-QI-----IGSAIQRLKv 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 152 -----DYP-HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLAD 225
Cdd:TIGR02633 393 ktaspFLPiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSD 471
|
....*....
gi 804913277 226 SVAVMQHGK 234
Cdd:TIGR02633 472 RVLVIGEGK 480
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
24-236 |
7.44e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 63.18 E-value: 7.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 24 VVNAISLQVNAGETLALVGESGSGKS--VTALSILrLLPTPPAV-YLSGDIRFHGESLLHASEQT--------------L 86
Cdd:PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTtfIEHLNAL-LLPDTGTIeWIFKDEKNKKKTKEKEKVLEklviqktrfkkikkI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 87 RGVRgNKIAMIFQEPMVSLNPlHTLEKQL-YEVLSLhrGMRREAARAEMIGCLDRVGIRQasQRLRDYPHQLSGGERQRV 165
Cdd:PRK13651 101 KEIR-RRVGVVFQFAEYQLFE-QTIEKDIiFGPVSM--GVSKEEAKKRAAKYIELVGLDE--SYLQRSPFELSGGQKRRV 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 166 MIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHGKCV 236
Cdd:PRK13651 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDGKII 244
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
305-503 |
8.43e-11 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 61.33 E-value: 8.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALL-RLIRSEGRIVFDGqsldtlnrrqllpvrhRIQVVFQDP---NSSLnpRLN 380
Cdd:cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLgELEKLSGSVSVPG----------------SIAYVSQEPwiqNGTI--REN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VL---QIIEEglRVHQpTLSGAQREQQVKAV----MMEVG-----LdpetrhrypaefSGGQRQRIAVARALILKPSLII 448
Cdd:cd03250 86 ILfgkPFDEE--RYEK-VIKACALEPDLEILpdgdLTEIGekginL------------SGGQKQRISLARAVYSDADIYL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 449 LDEPTSSLDKTVQAQIL--ALLKSLQ-QKHRlayIFISHDLHVVRAlCHQVIVLRQGE 503
Cdd:cd03250 151 LDDPLSAVDAHVGRHIFenCILGLLLnNKTR---ILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
26-457 |
9.57e-11 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 64.38 E-value: 9.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 26 NAISLQVNAGETLALVGESGSGKSvTALSIL---RLLPTPPAVYLSGDI--RFHGESLLHaseqtlrgvrgnKIAMIFQe 100
Cdd:NF033858 18 DDVSLDIPAGCMVGLIGPDGVGKS-SLLSLIagaRKIQQGRVEVLGGDMadARHRRAVCP------------RIAYMPQ- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 101 pmvslnplhTLEKQLYEVLSLHR---------GMRREAARAEMIGCLDRVGIrqasQRLRDYPH-QLSGGERQRVMIAMA 170
Cdd:NF033858 84 ---------GLGKNLYPTLSVFEnldffgrlfGQDAAERRRRIDELLRATGL----APFADRPAgKLSGGMKQKLGLCCA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 171 LLTRPELLIADEPTTALDVSVQAQILSLLRELQREL-NMGLLFIThnlsivkklA--------DSVAVMQHGKCV----- 236
Cdd:NF033858 151 LIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAERpGMSVLVAT---------AymeeaerfDWLVAMDAGRVLatgtp 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 237 ----ENQRADTLLSAPTHpytqkLLNSEPTGD-------PVPLPAGQAPLLEVDKL-----------RVAFPIRKGilkr 294
Cdd:NF033858 222 aellARTGADTLEAAFIA-----LLPEEKRRGhqpvvipPRPADDDDEPAIEARGLtmrfgdftavdHVSFRIRRG---- 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 295 vvdhnvvvnnisftlhpgETLGLVGESGSGKSTT-----GLallrLIRSEGRIVFDGQSLDTLNrrqlLPVRHRI----Q 365
Cdd:NF033858 293 ------------------EIFGFLGSNGCGKSTTmkmltGL----LPASEGEAWLFGQPVDAGD----IATRRRVgymsQ 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 366 VvFqdpnsSLNPRLNVLQIIEEGLRVHQptLSGAQREQQVKAVMMEVGLDPETRHRyPAEFSGGQRQRIAVARALILKPS 445
Cdd:NF033858 347 A-F-----SLYGELTVRQNLELHARLFH--LPAAEIAARVAEMLERFDLADVADAL-PDSLPLGIRQRLSLAVAVIHKPE 417
|
490
....*....|..
gi 804913277 446 LIILDEPTSSLD 457
Cdd:NF033858 418 LLILDEPTSGVD 429
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
279-485 |
1.17e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.80 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 279 DKLRVAFPIRKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTtglaLLRL---IRSEgrivFDGQSLDTLNRR 355
Cdd:TIGR03719 8 NRVSKVVPPKKEILK----------DISLSFFPGAKIGVLGLNGAGKST----LLRImagVDKD----FNGEARPQPGIK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 356 -QLLPvrhriqvvfQDPnsSLNPRLNVLQIIEEGLRVHQPTLS----------------------GAQREQQVKAV---- 408
Cdd:TIGR03719 70 vGYLP---------QEP--QLDPTKTVRENVEEGVAEIKDALDrfneisakyaepdadfdklaaeQAELQEIIDAAdawd 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 409 ---MMEVGLDPetrHRYP------AEFSGGQRQRIAVARALILKPSLIILDEPTSSLDktvqAQILALLKSLQQKHRLAY 479
Cdd:TIGR03719 139 ldsQLEIAMDA---LRCPpwdadvTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD----AESVAWLERHLQEYPGTV 211
|
....*.
gi 804913277 480 IFISHD 485
Cdd:TIGR03719 212 VAVTHD 217
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
22-485 |
1.42e-10 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 63.80 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvTALSILR-------------------LLPTPPAVYLSGDIRFHGESLLHAS 82
Cdd:TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKS-TLLRIMAgvdkdfngearpqpgikvgYLPQEPQLDPTKTVRENVEEGVAEI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EQTLRgvRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLslhrgmrrEAARAEMigcLDRvGIRQASQRLR----DYP-HQL 157
Cdd:TIGR03719 97 KDALD--RFNEISAKYAEPDADFDKLAAEQAELQEII--------DAADAWD---LDS-QLEIAMDALRcppwDADvTKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDvsvqAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCV- 236
Cdd:TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLD----AESVAWLERHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIp 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 237 ---------ENQRADTLLSAPTHPYTQKLLNSE-------PTG--------------------------DPVPLPAGQ-- 272
Cdd:TIGR03719 239 wegnysswlEQKQKRLEQEEKEESARQKTLKRElewvrqsPKGrqakskarlaryeellsqefqkrnetAEIYIPPGPrl 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 273 -APLLEVDKLRVAFPIRKGIlkrvvdhnvvvNNISFTLHPGETLGLVGESGSGKSTtglaLLRLIRSE-----GRIVFdG 346
Cdd:TIGR03719 319 gDKVIEAENLTKAFGDKLLI-----------DDLSFKLPPGGIVGVIGPNGAGKST----LFRMITGQeqpdsGTIEI-G 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 347 QSldtlnrrqllpvrhrIQVVFQDPN-SSLNPRLNVLQIIEEGLRVhqptLSGAQREQQVKAVMMEVGLDPETRHRYPAE 425
Cdd:TIGR03719 383 ET---------------VKLAYVDQSrDALDPNKTVWEEISGGLDI----IKLGKREIPSRAYVGRFNFKGSDQQKKVGQ 443
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 426 FSGGQRQRIAVARALILKPSLIILDEPTSSLD-KTVQAQILALLKslqqkhrlayiF------ISHD 485
Cdd:TIGR03719 444 LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDvETLRALEEALLN-----------FagcavvISHD 499
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
305-474 |
1.50e-10 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 61.43 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLLpvRHRIQVVfqdPNSSlnpRLNVLQ 383
Cdd:PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRaTSGRIVFDGKDITDWQTAKIM--REAVAIV---PEGR---RVFSRM 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLRVHQPTLSGAQREQQVKAVMmevGLDP---ETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTV 460
Cdd:PRK11614 96 TVEENLAMGGFFAERDQFQERIKWVY---ELFPrlhERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
|
170
....*....|....
gi 804913277 461 QAQILALLKSLQQK 474
Cdd:PRK11614 173 IQQIFDTIEQLREQ 186
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
305-487 |
2.95e-10 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 60.42 E-value: 2.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLnprLNVlqI 384
Cdd:cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWL---LNA--T 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 385 IEEGLRVHQPTlsgaqREQQVKAVMMEVGLDP-----------ETRHRyPAEFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:cd03290 95 VEENITFGSPF-----NKQRYKAVTDACSLQPdidllpfgdqtEIGER-GINLSGGQRQRICVARALYQNTNIVFLDDPF 168
|
170 180 190
....*....|....*....|....*....|....*.
gi 804913277 454 SSLDKTVQAQIL--ALLKSLQQKHRlAYIFISHDLH 487
Cdd:cd03290 169 SALDIHLSDHLMqeGILKFLQDDKR-TLVLVTHKLQ 203
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-234 |
8.20e-10 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 61.95 E-value: 8.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 4 PLLAIENLSVGFrqQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTaLSILRLLpTPPAvylSGDIRFHGESLlhasE 83
Cdd:TIGR01257 927 PGVCVKNLVKIF--EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTT-LSILTGL-LPPT---SGTVLVGGKDI----E 995
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVRgNKIAMIFQEPMVsLNPLHTLEKQLYevLSLHRGMRREAARAEMIGCLDRVGIR-QASQRLRDyphqLSGGER 162
Cdd:TIGR01257 996 TNLDAVR-QSLGMCPQHNIL-FHHLTVAEHILF--YAQLKGRSWEEAQLEMEAMLEDTGLHhKRNEEAQD----LSGGMQ 1067
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLreLQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:TIGR01257 1068 RKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGR 1137
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
35-230 |
1.10e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 59.30 E-value: 1.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 35 GETLALVGESGSGKSvTALSIL--RLLPT------PPAvyLSGDIRFHGESLLHaseQTLRGVRGNKIAMIFQEPMVSLN 106
Cdd:cd03236 26 GQVLGLVGPNGIGKS-TALKILagKLKPNlgkfddPPD--WDEILDEFRGSELQ---NYFTKLLEGDVKVIVKPQYVDLI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 107 PlHTLEKQLYEVLSL--HRGMRREAaraemigcLDRVGIRQASQRLRDyphQLSGGERQRVMIAMALLTRPELLIADEPT 184
Cdd:cd03236 100 P-KAVKGKVGELLKKkdERGKLDEL--------VDQLELRHVLDRNID---QLSGGELQRVAIAAALARDADFYFFDEPS 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 804913277 185 TALDVSVQAQILSLLRELQRELNmGLLFITHNLSIVKKLADSVAVM 230
Cdd:cd03236 168 SYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLAVLDYLSDYIHCL 212
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
306-525 |
1.40e-09 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 60.41 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLGLVGESGSGKSTTGLALL-RLIRSEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDPNSSL------NPR 378
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAgELPLLSGERQSQFSHITRLSFEQL---QKLVSDEWQRNNTDMlspgedDTG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGlrVHQPTLSgAQREQQVkavmmevGLDP--ETRHRYpaeFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:PRK10938 100 RTTAEIIQDE--VKDPARC-EQLAQQF-------GITAllDRRFKY---LSTGETRKTLLCQALMSEPDLLILDEPFDGL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 457 DKTVQAQILALLKSLQQKhRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFtapQQAYTRQL 525
Cdd:PRK10938 167 DVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL---QQALVAQL 231
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
28-255 |
1.58e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 60.81 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 28 ISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPavylSGDIRFHGESLLhaSEQTLRGVRgNKIAMIFQEPMV---- 103
Cdd:PTZ00265 404 LNFTLTEGKTYAFVGESGCGKS-TILKLIERLYDPT----EGDIIINDSHNL--KDINLKWWR-SKIGVVSQDPLLfsns 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 104 ----------SLNPLHTLEKQL-------YEVLSLHRGMRREAAR--AEMIGCLDRVGIRQASQR--------------- 149
Cdd:PTZ00265 476 iknnikyslySLKDLEALSNYYnedgndsQENKNKRNSCRAKCAGdlNDMSNTTDSNELIEMRKNyqtikdsevvdvskk 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 150 --LRDY---------------PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLF 212
Cdd:PTZ00265 556 vlIHDFvsalpdkyetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 804913277 213 ITHNLSIVkKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQK 255
Cdd:PTZ00265 636 IAHRLSTI-RYANTIFVLSNRERGSTVDVDIIGEDPTKDNKEN 677
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
125-244 |
2.96e-09 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 58.98 E-value: 2.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 125 MRREAARAEMIGCLDRVGIRQASQRLrdyPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQR 204
Cdd:NF000106 116 LSRKDARARADELLERFSLTEAAGRA---AAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVR 192
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 804913277 205 ElNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTL 244
Cdd:NF000106 193 D-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
7-246 |
3.29e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 59.75 E-value: 3.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 7 AIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHASEQTL 86
Cdd:PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE-----RGRILIDGCDISKFGLMDL 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 87 RGVRGnkiaMIFQEPMV-------SLNPL--HTlEKQLYEvlSLHRGMRREAARAEMIGcLDrVGIRQASQrlrdyphQL 157
Cdd:PLN03130 1312 RKVLG----IIPQAPVLfsgtvrfNLDPFneHN-DADLWE--SLERAHLKDVIRRNSLG-LD-AEVSEAGE-------NF 1375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMglLFITHNLSIVKKlADSVAVMQHGKCVE 237
Cdd:PLN03130 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILVLDAGRVVE 1452
|
....*....
gi 804913277 238 NQRADTLLS 246
Cdd:PLN03130 1453 FDTPENLLS 1461
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
306-457 |
3.33e-09 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 59.49 E-value: 3.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLGLVGESGSGKSTtglaLLRLIRSegrivfdgQSLDTLNRR-QLLpvrHRIQVVFQDPNSSLNPRLNV--- 381
Cdd:PLN03073 197 SVTLAFGRHYGLVGRNGTGKTT----FLRYMAM--------HAIDGIPKNcQIL---HVEQEVVGDDTTALQCVLNTdie 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 382 -LQIIEEGLRVHQ-------PTLSG---------------AQR----------------EQQVKAVMMEVGLDPETRHRY 422
Cdd:PLN03073 262 rTQLLEEEAQLVAqqrelefETETGkgkgankdgvdkdavSQRleeiykrlelidaytaEARAASILAGLSFTPEMQVKA 341
|
170 180 190
....*....|....*....|....*....|....*
gi 804913277 423 PAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PLN03073 342 TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
5-234 |
3.62e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 58.97 E-value: 3.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSvGFRQqqhvrPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLL-HASE 83
Cdd:PRK10982 250 ILEVRNLT-SLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-----SAGTITLHGKKINnHNAN 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRgvrgNKIAMIFQEPMVSlnplhtlekQLYEVL-----SLHRGMRREAARaemIGCLDRVGIRQASQ------RLRD 152
Cdd:PRK10982 319 EAIN----HGFALVTEERRST---------GIYAYLdigfnSLISNIRNYKNK---VGLLDNSRMKSDTQwvidsmRVKT 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 153 YPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSV 227
Cdd:PRK10982 383 PGHRtqigsLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRI 461
|
....*..
gi 804913277 228 AVMQHGK 234
Cdd:PRK10982 462 LVMSNGL 468
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
6-253 |
4.39e-09 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 57.23 E-value: 4.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVgfRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLLHASEQT 85
Cdd:cd03288 20 IKIHDLCV--RYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-----FDGKIVIDGIDISKLPLHT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LRgvrgNKIAMIFQEPMV-------SLNPLHTL-EKQLYEVLSLhrgmrreAARAEMI----GCLDRVgirqasqrLRDY 153
Cdd:cd03288 93 LR----SRLSIILQDPILfsgsirfNLDPECKCtDDRLWEALEI-------AQLKNMVkslpGGLDAV--------VTEG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLreLQRELNMGLLFITHNLSIVKKlADSVAVMQHG 233
Cdd:cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVV--MTAFADRTVVTIAHRVSTILD-ADLVLVLSRG 230
|
250 260
....*....|....*....|
gi 804913277 234 KCVENQRADTLLSAPTHPYT 253
Cdd:cd03288 231 ILVECDTPENLLAQEDGVFA 250
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
24-237 |
5.70e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 59.02 E-value: 5.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 24 VVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLlhaSEQTLRGVRgNKIAMIFQEPMv 103
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-----CGGEIRVNGREI---GAYGLRELR-RQFSMIPQDPV- 1394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 104 slnplhtlekqlyevlsLHRGMRR-------EAARAEMIGCLDRVGIRQ--ASQ------RLRDYPHQLSGGERQRVMIA 168
Cdd:PTZ00243 1395 -----------------LFDGTVRqnvdpflEASSAEVWAALELVGLRErvASEsegidsRVLEGGSNYSVGQRQLMCMA 1457
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 169 MALLTRPELLI-ADEPTT----ALDVSVQAQILSLLRelqrelNMGLLFITHNLSIVKKLaDSVAVMQHGKCVE 237
Cdd:PTZ00243 1458 RALLKKGSGFIlMDEATAnidpALDRQIQATVMSAFS------AYTVITIAHRLHTVAQY-DKIIVMDHGAVAE 1524
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
305-515 |
7.74e-09 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 56.76 E-value: 7.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST---------TGLALLRLIRSEGRIVFDGQSLDTLNRRQLLpvrhRIQVVFQDPNSSL 375
Cdd:PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTllkalagdlTGGGAPRGARVTGDVTLNGEPLAAIDAPRLA----RLRAVLPQAAQPA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 376 NPrLNVLQIIEEGLRVHQPTLSGAQREQQ--VKAVMMEVGLDPETRhRYPAEFSGGQRQRIAVARAL---------ILKP 444
Cdd:PRK13547 96 FA-FSAREIVLLGRYPHARRAGALTHRDGeiAWQALALAGATALVG-RDVTTLSGGELARVQFARVLaqlwpphdaAQPP 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 445 SLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFT 515
Cdd:PRK13547 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT 244
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
311-500 |
7.82e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.69 E-value: 7.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 311 PGETLGLVGESGSGKSTTGLALLRLIRSEGRivfdgqsldtlnrrqllpvrhriQVVFQDPNSSLNPRLNVLQIIEeglr 390
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGG-----------------------GVIYIDGEDILEEVLDQLLLII---- 53
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 391 vhqptlsgaqreqqvkavmmevgldpetRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILAL--- 467
Cdd:smart00382 54 ----------------------------VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLeel 105
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 468 --LKSLQQKHRLAYIFISH------DLHVVRALCHQVIVLR 500
Cdd:smart00382 106 rlLLLLKSEKNLTVILTTNdekdlgPALLRRRFDRRIVLLL 146
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
23-233 |
7.92e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 56.19 E-value: 7.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102
Cdd:cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-----LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 103 VslnplhtLEKQLYEVLSLHRGMRREAARAEMIGC-----LDRVGIRQASQrLRDYPHQLSGGERQRVMIAMALLTRPEL 177
Cdd:cd03290 90 L-------LNATVEENITFGSPFNKQRYKAVTDACslqpdIDLLPFGDQTE-IGERGINLSGGQRQRICVARALYQNTNI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 804913277 178 LIADEPTTALDVSV-----QAQILSLLRELQRElnmgLLFITHNLSIVKKlADSVAVMQHG 233
Cdd:cd03290 162 VFLDDPFSALDIHLsdhlmQEGILKFLQDDKRT----LVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
8-247 |
7.93e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 58.50 E-value: 7.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 8 IENLSVGFRQQQHVR-PVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPAVYL------------------- 67
Cdd:PTZ00265 1166 IEIMDVNFRYISRPNvPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIvfknehtndmtneqdyqgd 1245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 68 --------------------SGD----IRFHGESLLHA---SEQTLRGVRgNKIAMIFQEPMVslnplhtLEKQLYEVLS 120
Cdd:PTZ00265 1246 eeqnvgmknvnefsltkeggSGEdstvFKNSGKILLDGvdiCDYNLKDLR-NLFSIVSQEPML-------FNMSIYENIK 1317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 121 LHR--GMRREAARAEMIGCLDRVgIR----QASQRLRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQ 194
Cdd:PTZ00265 1318 FGKedATREDVKRACKFAAIDEF-IEslpnKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 195 ILSLLRELQRELNMGLLFITHNLSIVKKlADSVAVMQH----GKCVENQRA-DTLLSA 247
Cdd:PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNpdrtGSFVQAHGThEELLSV 1453
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
24-221 |
1.11e-08 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 57.84 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 24 VVNAISLQVNAGETLALVGESGSGKSvtalSILRLLptppavylsgdirfhGEsLLHASEQTLRGVRGNKIAMIFQEPMV 103
Cdd:TIGR00954 467 LIESLSFEVPSGNNLLICGPNGCGKS----SLFRIL---------------GE-LWPVYGGRLTKPAKGKLFYVPQRPYM 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 104 SLNplhTLEKQLYEVLSLHRGMRREAARAEMIGCLDRVGIRQASQR------LRDYPHQLSGGERQRVMIAMALLTRPEL 177
Cdd:TIGR00954 527 TLG---TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEReggwsaVQDWMDVLSGGEKQRIAMARLFYHKPQF 603
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 804913277 178 LIADEPTTALDVSVQAQILSLLrelqRELNMGLLFITHNLSIVK 221
Cdd:TIGR00954 604 AILDECTSAVSVDVEGYMYRLC----REFGITLFSVSHRKSLWK 643
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
22-201 |
1.16e-08 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 55.27 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLP--TPPAvylSGDIRFHGEsllhasEQTLRGVR------GNK 93
Cdd:PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKT----TLLRLIAglLPPA---AGTIKLDGG------DIDDPDVAeachylGHR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 94 IAMifqepmvslNPLHTLEkqlyEVLSLHRGMRReAARAEMIGCLDRVGIrqasQRLRDYPHQ-LSGGERQRVMIAMALL 172
Cdd:PRK13539 82 NAM---------KPALTVA----ENLEFWAAFLG-GEELDIAAALEAVGL----APLAHLPFGyLSAGQKRRVALARLLV 143
|
170 180
....*....|....*....|....*....
gi 804913277 173 TRPELLIADEPTTALDVSVQAQILSLLRE 201
Cdd:PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRA 172
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-242 |
1.25e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 57.49 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVgFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSIL-----RllptppavYLSGDIRFHGEsll 79
Cdd:NF040905 257 VFEVKNWTV-YHPLHPERKVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFgrsygR--------NISGTVFKDGK--- 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 80 hasEQTLRGVR---GNKIA----------MIFQEPM---VSLNPLHTLEKqlYEVLSLHRGMR-REAARAEMigcldRV- 141
Cdd:NF040905 325 ---EVDVSTVSdaiDAGLAyvtedrkgygLNLIDDIkrnITLANLGKVSR--RGVIDENEEIKvAEEYRKKM-----NIk 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 142 --GIRQASQRLrdyphqlSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSI 219
Cdd:NF040905 395 tpSVFQKVGNL-------SGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAE-GKGVIVISSELPE 466
|
250 260
....*....|....*....|....
gi 804913277 220 VKKLADSVAVMQHGKCV-ENQRAD 242
Cdd:NF040905 467 LLGMCDRIYVMNEGRITgELPREE 490
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
23-233 |
1.78e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 57.72 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 23 PVVNAISLQVNAGETLALVGESGSGKSVTalsiLRLLPTPPAVyLSGDIRFHGESLLhaseQTLRGVRGNkiaMIFQEPM 102
Cdd:TIGR01257 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTT----FKMLTGDTTV-TSGDATVAGKSIL----TNISDVHQN---MGYCPQF 2020
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 103 VSLNPLHTLEKQLYEVLSLhRGMRREAARAEMIGCLDRVGIRQASQRLRDyphQLSGGERQRVMIAMALLTRPELLIADE 182
Cdd:TIGR01257 2021 DAIDDLLTGREHLYLYARL-RGVPAEEIEKVANWSIQSLGLSLYADRLAG---TYSGGNKRKLSTAIALIGCPPLVLLDE 2096
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 804913277 183 PTTALDVSVQAQILSLLRELQRElNMGLLFITHNLSIVKKLADSVAVMQHG 233
Cdd:TIGR01257 2097 PTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
305-513 |
1.86e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 55.59 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKST-TGLALLRLIRSEGRIVFDGQsldtlnrrqllpvrhrIQVVfqDPNSSLNPRLNVLQ 383
Cdd:PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTlSNIIGGSLSPTVGKVDRNGE----------------VSVI--AISAGLSGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 IIEEGLrvhqptLSGAQREQQVKAVM------MEVGldpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK13546 105 NIEFKM------LCMGFKRKEIKAMTpkiiefSELG---EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 458 KTVQAQILALLKSLQQKHRLAYiFISHDLHVVRALCHQVIVLRQGEVVEQGQCERV 513
Cdd:PRK13546 176 QTFAQKCLDKIYEFKEQNKTIF-FVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
309-502 |
2.03e-08 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 57.33 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 309 LHPGETLGLVGESGSGKSTTGLALL-RLIRSEGRIVFDGQSLDTlnrrqllpvrhRIQVVFQdpNSSLNPRLNVLQIIEE 387
Cdd:TIGR01257 1962 VRPGECFGLLGVNGAGKTTTFKMLTgDTTVTSGDATVAGKSILT-----------NISDVHQ--NMGYCPQFDAIDDLLT 2028
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 388 GlRVH---QPTLSGAQREQQVKAV---MMEVGLDPETrHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQ 461
Cdd:TIGR01257 2029 G-REHlylYARLRGVPAEEIEKVAnwsIQSLGLSLYA-DRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 462 AQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIVLRQG 502
Cdd:TIGR01257 2107 RMLWNTIVSIIREGR-AVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
24-247 |
2.41e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 56.88 E-value: 2.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 24 VVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHASEQTLRgvrgNKIAMIFQEPMV 103
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA-----EGEIIIDGLNIAKIGLHDLR----FKITIIPQDPVL 1371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 104 -------SLNPLHTL-EKQLYEVLSLhrgmrreAARAEMIGCLDRVGIRQASQRlrdyPHQLSGGERQRVMIAMALLTRP 175
Cdd:TIGR00957 1372 fsgslrmNLDPFSQYsDEEVWWALEL-------AHLKTFVSALPDKLDHECAEG----GENLSVGQRQLVCLARALLRKT 1440
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 804913277 176 ELLIADEPTTALDVSVQAQILSLLRElQRElNMGLLFITHNLSIVKKLAdSVAVMQHGKCVENQRADTLLSA 247
Cdd:TIGR00957 1441 KILVLDEATAAVDLETDNLIQSTIRT-QFE-DCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQQ 1509
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
305-515 |
2.57e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 56.44 E-value: 2.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSldtlnrrQLLPVrhriqvvfqdpNSSLNPRL 379
Cdd:PRK13545 43 ISFEVPEGEIVGIIGLNGSGKST----LSNLIAgvtmpNKGTVDIKGSA-------ALIAI-----------SSGLNGQL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIE-EGLrvhqptLSGAQREQ--QVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSL 456
Cdd:PRK13545 101 TGIENIElKGL------MMGLTKEKikEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 457 DKTVQAQILALLKSLQQKHRLAYiFISHDLHVVRALCHQVIVLRQGEVVEQGQCERVFT 515
Cdd:PRK13545 175 DQTFTKKCLDKMNEFKEQGKTIF-FISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
21-504 |
3.68e-08 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 55.95 E-value: 3.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 21 VRPVVNAISLQVNAGETLALVGESGSGKSvTALSILR--------------------------LLPTPPAVY-LSGDIRF 73
Cdd:PRK10636 13 VRVLLDNATATINPGQKVGLVGKNGCGKS-TLLALLKneisadggsytfpgnwqlawvnqetpALPQPALEYvIDGDREY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 74 HG--ESLLHASEQTlrgvRGNKIAMIFQEpmvsLNPLHTLEKQlyevlslhrgmrreaARAEMIgcLDRVGIRQasQRLR 151
Cdd:PRK10636 92 RQleAQLHDANERN----DGHAIATIHGK----LDAIDAWTIR---------------SRAASL--LHGLGFSN--EQLE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 152 DYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVqaqILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQ 231
Cdd:PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA---VIWLEKWL-KSYQGTLILISHDRDFLDPIVDKIIHIE 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 232 HGK---------CVENQRADTL---------------------------------------------LSAPTH---PYTQ 254
Cdd:PRK10636 221 QQSlfeytgnysSFEVQRATRLaqqqamyesqqervahlqsyidrfrakatkakqaqsrikmlermeLIAPAHvdnPFHF 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 255 KLLnseptgDPVPLPAgqaPLLEVDKLRVAFPIRKgILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTtglaLLR 334
Cdd:PRK10636 301 SFR------APESLPN---PLLKMEKVSAGYGDRI-ILD----------SIKLNLVPGSRIGLLGRNGAGKST----LIK 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 335 LIRSE-----GRI-VFDGQSLDTLNRRQLLPVRhriqvvfqdpnsslnprlnvlqiIEEGLRVHQPTLSGAQREQQVKAV 408
Cdd:PRK10636 357 LLAGElapvsGEIgLAKGIKLGYFAQHQLEFLR-----------------------ADESPLQHLARLAPQELEQKLRDY 413
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 409 MMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTV-QAQILALLkslqqKHRLAYIFISHDLH 487
Cdd:PRK10636 414 LGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMrQALTEALI-----DFEGALVVVSHDRH 488
|
570
....*....|....*..
gi 804913277 488 VVRALCHQVIVLRQGEV 504
Cdd:PRK10636 489 LLRSTTDDLYLVHDGKV 505
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
22-196 |
5.57e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 55.69 E-value: 5.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavylSGDIRFHGESLLHASEQTLR---GVRGNKIAMIF 98
Cdd:TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST------EGEIQIDGVSWNSVTLQTWRkafGVIPQKVFIFS 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 99 QEPMVSLNPlhtlekqlYEVLSlhrgmrreaaRAEMIGCLDRVGIRQASQR--------LRDYPHQLSGGERQRVMIAMA 170
Cdd:TIGR01271 1306 GTFRKNLDP--------YEQWS----------DEEIWKVAEEVGLKSVIEQfpdkldfvLVDGGYVLSNGHKQLMCLARS 1367
|
170 180
....*....|....*....|....*.
gi 804913277 171 LLTRPELLIADEPTTALDvSVQAQIL 196
Cdd:TIGR01271 1368 ILSKAKILLLDEPSAHLD-PVTLQII 1392
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
305-502 |
6.44e-08 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 55.69 E-value: 6.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALL-RLIRSEGRIvfdgqsldtlnrrqllpvRHRIQVVFQDPNSSLNP---RLN 380
Cdd:TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMgELEPSEGKI------------------KHSGRISFSPQTSWIMPgtiKDN 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VLQIIEEGLRVHQPTLSGAQREQQV-------KAVMMEVGLdpetrhrypaEFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:TIGR01271 507 IIFGLSYDEYRYTSVIKACQLEEDIalfpekdKTVLGEGGI----------TLSGGQRARISLARAVYKDADLYLLDSPF 576
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 454 SSLDKTVQAQIL--ALLKSLQQKHRlayIFISHDL-HVVRAlcHQVIVLRQG 502
Cdd:TIGR01271 577 THLDVVTEKEIFesCLCKLMSNKTR---ILVTSKLeHLKKA--DKILLLHEG 623
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
31-229 |
8.04e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 54.79 E-value: 8.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 31 QVNAGETLALVGESGSGKSvTALSIL--RLLPTPPAVYLSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMvslnpl 108
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKT-TFAKILagVLKPDEGEVDEDLKISYKPQYISPDYDGTVEEFLRSANTDDFGSSY------ 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 109 htLEKQLYEVLSLHRGMRREaaraemigcldrvgirqasqrLRDyphqLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
Cdd:COG1245 435 --YKTEIIKPLGLEKLLDKN---------------------VKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 487
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 189 VSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAV 229
Cdd:COG1245 488 VEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
305-370 |
9.78e-08 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 54.42 E-value: 9.78e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtgLA--LLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQD 370
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKST--LAklLTGLYRpESGEILLDGQPVTADNREAY---RQLFSAVFSD 414
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
22-215 |
1.26e-07 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 54.25 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvTALSILrllptppavylSGDirfHGESllHASEQTLRGVR---GNKIAMIF 98
Cdd:PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKS-TLLSLI-----------TGD---HPQG--YSNDLTLFGRRrgsGETIWDIK 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 99 QepmvslnplhtleKQLYEVLSLHRGMRREAARAEMI--GCLDRVGIRQA-SQRLR-----------------DYP-HQL 157
Cdd:PRK10938 336 K-------------HIGYVSSSLHLDYRVSTSVRNVIlsGFFDSIGIYQAvSDRQQklaqqwldilgidkrtaDAPfHSL 402
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITH 215
Cdd:PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
417-515 |
1.52e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 53.59 E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 417 ETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLqQKHRLAYIFISHDLHVVRALCHQV 496
Cdd:NF000106 136 EAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSM-VRDGATVLLTTQYMEEAEQLAHEL 214
|
90
....*....|....*....
gi 804913277 497 IVLRQGEVVEQGQCERVFT 515
Cdd:NF000106 215 TVIDRGRVIADGKVDELKT 233
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
157-229 |
1.69e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 54.04 E-value: 1.69e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAV 229
Cdd:PRK13409 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
5-485 |
2.21e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 53.42 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 5 LLAIENLSVGFRQQqhvrPVVNAISLQVNAGETLALVGESGSGKSvTALSIL--------------------RLLPTPP- 63
Cdd:PRK11147 3 LISIHGAWLSFSDA----PLLDNAELHIEDNERVCLVGRNGAGKS-TLMKILngevllddgriiyeqdlivaRLQQDPPr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 64 AV------YLSGDIRFHGEsLLHASEQTLRgvrgnkiaMIFQEPMVS-LNPLhtleKQLYEVLSLHRGMRREAARAEMIG 136
Cdd:PRK11147 78 NVegtvydFVAEGIEEQAE-YLKRYHDISH--------LVETDPSEKnLNEL----AKLQEQLDHHNLWQLENRINEVLA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 137 CLDRvgirQASQRLRDyphqLSGGERQRVMIAMALLTRPELLIADEPTTALDVsvqaQILSLLRELQRELNMGLLFITHN 216
Cdd:PRK11147 145 QLGL----DPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDI----ETIEWLEGFLKTFQGSIIFISHD 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 217 LSIVKKLADSVAVMQHGKCV--------------ENQRADTLLSAPthpYTQKLLNSEP-------------TGDPVPLP 269
Cdd:PRK11147 213 RSFIRNMATRIVDLDRGKLVsypgnydqyllekeEALRVEELQNAE---FDRKLAQEEVwirqgikarrtrnEGRVRALK 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 270 A------------GQAPL------------LEVDKLRVAFPiRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGK 325
Cdd:PRK11147 290 AlrrerserrevmGTAKMqveeasrsgkivFEMENVNYQID-GKQLVKD----------FSAQVQRGDKIALIGPNGCGK 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 326 STtglaLLRLIrsegrivfdgqsLDtlnrrQLLPVRHRIQV-------VFQDPNSSLNPRLNVLQIIEEGLRvhQPTLSG 398
Cdd:PRK11147 359 TT----LLKLM------------LG-----QLQADSGRIHCgtklevaYFDQHRAELDPEKTVMDNLAEGKQ--EVMVNG 415
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 399 aqREQQVKAVMMEVgLDPETRHRYPAE-FSGGQRQRIAVARaLILKPS-LIILDEPTSSLDktvqAQILALLKSLQQKHR 476
Cdd:PRK11147 416 --RPRHVLGYLQDF-LFHPKRAMTPVKaLSGGERNRLLLAR-LFLKPSnLLILDEPTNDLD----VETLELLEELLDSYQ 487
|
....*....
gi 804913277 477 LAYIFISHD 485
Cdd:PRK11147 488 GTVLLVSHD 496
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
427-514 |
3.51e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 53.44 E-value: 3.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 427 SGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQIL--ALLKSLQQKHRlayIFISHDLHVVrALCHQVIVLRQGEV 504
Cdd:PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFdsCMKDELKGKTR---VLVTNQLHFL-PLMDRIILVSEGMI 817
|
90
....*....|
gi 804913277 505 VEQGQCERVF 514
Cdd:PLN03232 818 KEEGTFAELS 827
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
305-491 |
3.68e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 50.72 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIR-----SEGRIVFDGQSLD---TLNRRQLLPVRHRiqvvfqdpnSSLN 376
Cdd:PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTT----LLKLIAgllnpEKGEILFERQSIKkdlCTYQKQLCFVGHR---------SGIN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 377 PRLNvlqiIEEGLRVHQPTLSGAQR-EQQVKAVMMEVGLDpetrhrYPAEF-SGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:PRK13540 87 PYLT----LRENCLYDIHFSPGAVGiTELCRLFSLEHLID------YPCGLlSSGQKRQVALLRLWMSKAKLWLLDEPLV 156
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 455 SLDktvQAQILALLKSLQQkHRL---AYIFISH-DLHVVRA 491
Cdd:PRK13540 157 ALD---ELSLLTIITKIQE-HRAkggAVLLTSHqDLPLNKA 193
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
306-503 |
3.70e-07 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 50.68 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLHPGETLgLVGESGSGKSTTGLALlrlirsegRIVFDGQSLDTLNRRQLLP-------VRHRIQVVFQDPNSSLNPR 378
Cdd:cd03240 17 EIEFFSPLTL-IVGQNGAGKTTIIEAL--------KYALTGELPPNSKGGAHDPkliregeVRAQVKLAFENANGKKYTI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 379 LNVLQIIEEGLRVHQptlsgaqrEQQVKAVMMEVGLdpetrhrypaeFSGGQRQ------RIAVARALILKPSLIILDEP 452
Cdd:cd03240 88 TRSLAILENVIFCHQ--------GESNWPLLDMRGR-----------CSGGEKVlasliiRLALAETFGSNCGILALDEP 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 804913277 453 TSSLDK-TVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGE 503
Cdd:cd03240 149 TTNLDEeNIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDGR 200
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
305-508 |
4.47e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.09 E-value: 4.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTgLALLR--LIRSEGRIVFDGQSLDTlnrrQLLPVRHRIQVVFQDpnsslNPRLNVL 382
Cdd:TIGR01257 949 LNITFYENQITAFLGHNGAGKTTT-LSILTglLPPTSGTVLVGGKDIET----NLDAVRQSLGMCPQH-----NILFHHL 1018
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 383 QIIEEGLRVHQptLSGAQREQ---QVKAVMMEVGLDpETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKT 459
Cdd:TIGR01257 1019 TVAEHILFYAQ--LKGRSWEEaqlEMEAMLEDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPY 1095
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 804913277 460 VQAQILALLksLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508
Cdd:TIGR01257 1096 SRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
280-457 |
4.72e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 52.43 E-value: 4.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 280 KLRVAFPIRKGILKrvvdhnvvvnNISFTLHPGETLGLVGESGSGKSTtglaLLRLI-----RSEGRIVF-DGQSLDtln 353
Cdd:PRK11819 11 RVSKVVPPKKQILK----------DISLSFFPGAKIGVLGLNGAGKST----LLRIMagvdkEFEGEARPaPGIKVG--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 354 rrqLLPvrhriqvvfQDPnsSLNPRLNVLQIIEEGLrvhQPTLSGAQREQQVKAVMMEV--------------------- 412
Cdd:PRK11819 74 ---YLP---------QEP--QLDPEKTVRENVEEGV---AEVKAALDRFNEIYAAYAEPdadfdalaaeqgelqeiidaa 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 413 -GLDPETR-------HRYP------AEFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK11819 137 dAWDLDSQleiamdaLRCPpwdakvTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
308-509 |
4.83e-07 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 50.87 E-value: 4.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 308 TLHPGETLGLVGESGSGKSTtglaLLRLIrsEGRIVFDGQSLDTLnrrqLLPVRHRIQVVFQDPNSSlnprlnVLQIIEE 387
Cdd:cd03237 21 SISESEVIGILGPNGIGKTT----FIKML--AGVLKPDEGDIEIE----LDTVSYKPQYIKADYEGT------VRDLLSS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 388 GLRVHqptLSGAQREQQV-KAVMMEVGLDPETRhrypaEFSGGQRQRIAVARALILKPSLIILDEPTSSLDktVQAQILA 466
Cdd:cd03237 85 ITKDF---YTHPYFKTEIaKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD--VEQRLMA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 804913277 467 --LLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLrQGEVVEQGQ 509
Cdd:cd03237 155 skVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF-EGEPSVNGV 198
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
305-503 |
6.38e-07 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 51.01 E-value: 6.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALL-RLIRSEGRIvfdgqsldtlnrrqllpvRHRIQVVFQDPNSSLNP---RLN 380
Cdd:cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILgELEPSEGKI------------------KHSGRISFSSQFSWIMPgtiKEN 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 381 VLQIIEEGLRVHQPTLSGAQREQQV-------KAVMMEVGLDpetrhrypaeFSGGQRQRIAVARALILKPSLIILDEPT 453
Cdd:cd03291 118 IIFGVSYDEYRYKSVVKACQLEEDItkfpekdNTVLGEGGIT----------LSGGQRARISLARAVYKDADLYLLDSPF 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 804913277 454 SSLDKTVQAQIL--ALLKSLQQKHRlayIFISHDL-HVVRAlcHQVIVLRQGE 503
Cdd:cd03291 188 GYLDVFTEKEIFesCVCKLMANKTR---ILVTSKMeHLKKA--DKILILHEGS 235
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
427-511 |
1.23e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 51.66 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 427 SGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQIL--ALLKSLQQKHRlayIFISHDLHVVRALcHQVIVLRQGEV 504
Cdd:PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFdkCIKDELRGKTR---VLVTNQLHFLSQV-DRIILVHEGMI 817
|
....*..
gi 804913277 505 VEQGQCE 511
Cdd:PLN03130 818 KEEGTYE 824
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
157-233 |
1.43e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 48.47 E-value: 1.43e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 157 LSGGERQRVMIA--MALLTRPELLIADEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVkKLADSVAVMQHG 233
Cdd:cd03238 88 LSGGELQRVKLAseLFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEHNLDVL-SSADWIIDFGPG 164
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
305-471 |
1.53e-06 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 48.78 E-value: 1.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtglaLLRLIRS-------EGRIVFDGQSLDTLNRRQLLPVRHriqvvfqdpNSSLNP 377
Cdd:cd03232 26 ISGYVKPGTLTALMGESGAGKTT----LLDVLAGrktagviTGEILINGRPLDKNFQRSTGYVEQ---------QDVHSP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 378 RLNVlqiiEEGLRvhqptLSGAQReqqvkavmmevGLDPEtrhrypaefsggQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:cd03232 93 NLTV----REALR-----FSALLR-----------GLSVE------------QRKRLTIGVELAAKPSILFLDEPTSGLD 140
|
170
....*....|....
gi 804913277 458 KTVQAQILALLKSL 471
Cdd:cd03232 141 SQAAYNIVRFLKKL 154
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
157-231 |
1.82e-06 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 48.34 E-value: 1.82e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQ 231
Cdd:cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
20-235 |
2.20e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 50.68 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 20 HVRPVVNAISLQVNAGETLALVGESGSGKSVTALSIL-RLLPTPPAVYLSGDIRFhgesllhaSEQTLRGVRGNkiamif 98
Cdd:TIGR01271 437 YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMgELEPSEGKIKHSGRISF--------SPQTSWIMPGT------ 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 99 qepmVSLNPLHTLEKQLYEVLSLHRGMRREaaraEMIGCLDrvgiRQASQRLRDYPHQLSGGERQRVMIAMALLTRPELL 178
Cdd:TIGR01271 503 ----IKDNIIFGLSYDEYRYTSVIKACQLE----EDIALFP----EKDKTVLGEGGITLSGGQRARISLARAVYKDADLY 570
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 179 IADEPTTALDVSVQAQIL-SLLRELQreLNMGLLFITHNLSIVKKlADSVAVMQHGKC 235
Cdd:TIGR01271 571 LLDSPFTHLDVVTEKEIFeSCLCKLM--SNKTRILVTSKLEHLKK-ADKILLLHEGVC 625
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
309-469 |
2.26e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 50.49 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 309 LHPGETLGLVGESGSGKSTtglaLLRLIRS---------EGRIVFDGQSLDTLNRRqllpvrHRIQVVFQDPNSSLNPRL 379
Cdd:TIGR00956 84 IKPGELTVVLGRPGSGCST----LLKTIASntdgfhigvEGVITYDGITPEEIKKH------YRGDVVYNAETDVHFPHL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 380 NVLQIIEEGLRVHQPTL--SGAQREQQVKAV----MMEVGLDPETRHRYPAEF----SGGQRQRIAVARALILKPSLIIL 449
Cdd:TIGR00956 154 TVGETLDFAARCKTPQNrpDGVSREEYAKHIadvyMATYGLSHTRNTKVGNDFvrgvSGGERKRVSIAEASLGGAKIQCW 233
|
170 180
....*....|....*....|
gi 804913277 450 DEPTSSLDKTVQAQILALLK 469
Cdd:TIGR00956 234 DNATRGLDSATALEFIRALK 253
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
157-221 |
2.32e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 50.40 E-value: 2.32e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTR---PELLIADEPTTALDVsvqAQILSLLRELQRELNMG--LLFITHNLSIVK 221
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHF---DDIKKLLEVLQRLVDKGntVVVIEHNLDVIK 896
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
20-242 |
2.36e-06 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 49.47 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 20 HVRPVVNAISLQVNAGETLALVGESGSGKSVTALSIL-RLLPTPPAVYLSGDIRFhgesllhaSEQTLRGVRGNkiamif 98
Cdd:cd03291 48 VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILgELEPSEGKIKHSGRISF--------SSQFSWIMPGT------ 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 99 qepmVSLNPLHTLEKQLYEVLSLHRgmrreaaraemiGCldrvgirQASQRLRDYPHQ-----------LSGGERQRVMI 167
Cdd:cd03291 114 ----IKENIIFGVSYDEYRYKSVVK------------AC-------QLEEDITKFPEKdntvlgeggitLSGGQRARISL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 168 AMALLTRPELLIADEPTTALDVSVQAQIL-SLLRELQRelNMGLLFITHNLSIVKKlADSVAVMQHGKC--------VEN 238
Cdd:cd03291 171 ARAVYKDADLYLLDSPFGYLDVFTEKEIFeSCVCKLMA--NKTRILVTSKMEHLKK-ADKILILHEGSSyfygtfseLQS 247
|
....
gi 804913277 239 QRAD 242
Cdd:cd03291 248 LRPD 251
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
3-234 |
2.83e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 50.17 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLLPTPPAVyLSGDIRF-HGESLLHA 81
Cdd:PRK10636 310 NPLLKMEKVSAGYGD----RIILDSIKLNLVPGSRIGLLGRNGAGKS----TLIKLLAGELAP-VSGEIGLaKGIKLGYF 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SEQTLRGVRGNKIAMifqEPMVSLNPlHTLEKQLYEVLSlhrgmrreaaraemigcldrvGIRQASQRLRDYPHQLSGGE 161
Cdd:PRK10636 381 AQHQLEFLRADESPL---QHLARLAP-QELEQKLRDYLG---------------------GFGFQGDKVTEETRRFSGGE 435
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALDVSV-QAqilslLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGK 234
Cdd:PRK10636 436 KARLVLALIVWQRPNLLLLDEPTNHLDLDMrQA-----LTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGK 504
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
35-224 |
3.56e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.98 E-value: 3.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 35 GETLALVGESGSGKSVTALSILRLL--PTPPAVYLSGDIRFHGESLLHASEQTLRGvrgnkiamifqepmvslnplhtle 112
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARALARELgpPGGGVIYIDGEDILEEVLDQLLLIIVGGK------------------------ 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 113 kqlyevlslhrgmrreaaraemigcldrvgirqasqrlrdyPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQ 192
Cdd:smart00382 58 -----------------------------------------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQE 96
|
170 180 190
....*....|....*....|....*....|....*..
gi 804913277 193 AQILSLLR-----ELQRELNMGLLFITHNLSIVKKLA 224
Cdd:smart00382 97 ALLLLLEElrlllLLKSEKNLTVILTTNDEKDLGPAL 133
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
22-188 |
3.79e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 49.35 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPpavylsgdirFHGESLLHA--------------SEQTLR 87
Cdd:PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKS-TLLRIMAGVDKE----------FEGEARPAPgikvgylpqepqldPEKTVR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 88 GV-------------RGNKIAMIFQEPMVSLNPLhtLEKQ--LYEVLslhrgmrrEAARAEMigcLDRVgIRQASQRLR- 151
Cdd:PRK11819 89 ENveegvaevkaaldRFNEIYAAYAEPDADFDAL--AAEQgeLQEII--------DAADAWD---LDSQ-LEIAMDALRc 154
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 152 ---DYP-HQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
Cdd:PRK11819 155 ppwDAKvTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
157-243 |
4.23e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 48.17 E-value: 4.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQhGKCV 236
Cdd:cd03237 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFE-GEPS 194
|
....*..
gi 804913277 237 ENQRADT 243
Cdd:cd03237 195 VNGVANP 201
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
409-490 |
4.45e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 46.93 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 409 MMEVGLDPETRHRYPAEFSGGQRQRIAVARALI--LKPSLIILDEPTSSLDKTVQAQILALLKSL-QQKHRLayIFISHD 485
Cdd:cd03238 71 LIDVGLGYLTLGQKLSTLSGGELQRVKLASELFsePPGTLFILDEPSTGLHQQDINQLLEVIKGLiDLGNTV--ILIEHN 148
|
....*
gi 804913277 486 LHVVR 490
Cdd:cd03238 149 LDVLS 153
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
311-471 |
5.85e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 49.34 E-value: 5.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 311 PGETLGLVGESGSGKsTTGLALL--RL---IRSEGRIVFDGQSLDTLNRRQLLPVRHriqvvfQDPNSslnPRLNVLQII 385
Cdd:TIGR00956 788 PGTLTALMGASGAGK-TTLLNVLaeRVttgVITGGDRLVNGRPLDSSFQRSIGYVQQ------QDLHL---PTSTVRESL 857
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 386 EEGLRVHQP-TLSGAQREQQVKAVM----ME------VGLdpetrhryPAE-FSGGQRQRIAVARALILKPSLII-LDEP 452
Cdd:TIGR00956 858 RFSAYLRQPkSVSKSEKMEYVEEVIklleMEsyadavVGV--------PGEgLNVEQRKRLTIGVELVAKPKLLLfLDEP 929
|
170
....*....|....*....
gi 804913277 453 TSSLDKTVQAQILALLKSL 471
Cdd:TIGR00956 930 TSGLDSQTAWSICKLMRKL 948
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
10-504 |
5.95e-06 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 49.09 E-value: 5.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 10 NLSVGFRQqqhvrpVVNAISLQVNAGETLALVGESGSGKSV----TALSILRLLP-----------------TPPAVYLS 68
Cdd:PLN03073 184 SISVGGRD------LIVDASVTLAFGRHYGLVGRNGTGKTTflryMAMHAIDGIPkncqilhveqevvgddtTALQCVLN 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 69 GDIR----FHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARAEMIGcldrvGIR 144
Cdd:PLN03073 258 TDIErtqlLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA-----GLS 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 145 QASQRLRDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELnmglLFITHNLSIVKKLA 224
Cdd:PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTF----IVVSHAREFLNTVV 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 225 DSVAVMQHGKC-----------------VENQRADTLLSAPTHPYTQKLLNS-------------------------EPT 262
Cdd:PLN03073 409 TDILHLHGQKLvtykgdydtfertreeqLKNQQKAFESNERSRSHMQAFIDKfrynakraslvqsrikaldrlghvdAVV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 263 GDP-----VPLPAG--QAPLLEVDKLRVAFPIRKGILKRvvdhnvvvnnISFTLHPGETLGLVGESGSGKSTtglaLLRL 335
Cdd:PLN03073 489 NDPdykfeFPTPDDrpGPPIISFSDASFGYPGGPLLFKN----------LNFGIDLDSRIAMVGPNGIGKST----ILKL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 336 IRSEGRIVfDGQSLDTLNRRQLLPVRHRIQVVfqdpNSSLNPRLNVLQ----IIEEGLRVHQPTLsgaqreqqvkAVMME 411
Cdd:PLN03073 555 ISGELQPS-SGTVFRSAKVRMAVFSQHHVDGL----DLSSNPLLYMMRcfpgVPEQKLRAHLGSF----------GVTGN 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 412 VGLDPETrhrypaEFSGGQRQRIAVARALILKPSLIILDEPTSSLD-KTVQAQILALLksLQQKhrlAYIFISHDLHVVR 490
Cdd:PLN03073 620 LALQPMY------TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDlDAVEALIQGLV--LFQG---GVLMVSHDEHLIS 688
|
570
....*....|....
gi 804913277 491 ALCHQVIVLRQGEV 504
Cdd:PLN03073 689 GSVDELWVVSEGKV 702
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
306-488 |
6.02e-06 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 47.75 E-value: 6.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 306 SFTLH------PGETLGLVGESGSGKSTTgLALL--RLIRSEGR---------IV--FDGQSLDTLNRRQL---LPVRHR 363
Cdd:cd03236 14 SFKLHrlpvprEGQVLGLVGPNGIGKSTA-LKILagKLKPNLGKfddppdwdeILdeFRGSELQNYFTKLLegdVKVIVK 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 364 IQVVFQDPNSSlnpRLNVLQIIEeglRVHQptlSGAQREqqvkaVMMEVGLDPeTRHRYPAEFSGGQRQRIAVARALILK 443
Cdd:cd03236 93 PQYVDLIPKAV---KGKVGELLK---KKDE---RGKLDE-----LVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARD 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 804913277 444 PSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHV 488
Cdd:cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLAV 201
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
236-277 |
7.74e-06 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 43.54 E-value: 7.74e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 804913277 236 VENQRADTLLSAPTHPYTQKLLNSEPTGDP----VPLPAGQAPLLE 277
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPpkrpLYTIPGNVPSLL 46
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
155-230 |
1.00e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.81 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 155 HQLSGGERQRVMIAMAL----LTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMgLLFITHNLsIVKKLADSVAVM 230
Cdd:cd03227 76 LQLSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQ-VIVITHLP-ELAELADKLIHI 153
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
157-221 |
1.08e-05 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 47.22 E-value: 1.08e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALL---TRPELLIADEPTTALDVsvqAQILSLLRELQRELNMG--LLFITHNLSIVK 221
Cdd:cd03271 170 LSGGEAQRIKLAKELSkrsTGKTLYILDEPTTGLHF---HDVKKLLEVLQRLVDKGntVVVIEHNLDVIK 236
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
427-501 |
1.44e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.43 E-value: 1.44e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 427 SGGQRQRIAVARALIL---KP-SLIILDEPTSSLDKTVQAQILALLKSLQQKHRLaYIFISHDLHVVRALCHQVIVLRQ 501
Cdd:cd03227 79 SGGEKELSALALILALaslKPrPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQ-VIVITHLPELAELADKLIHIKKV 156
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
412-499 |
1.44e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 47.90 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 412 VGLDPETRHRYPAEFSGGQRQRIAVARALIL---KPSLIILDEPTSSL-DKTVQAQILALLKSLQQKHRLayIFISHDLH 487
Cdd:PRK00635 796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLhTHDIKALIYVLQSLTHQGHTV--VIIEHNMH 873
|
90
....*....|..
gi 804913277 488 VVRaLCHQVIVL 499
Cdd:PRK00635 874 VVK-VADYVLEL 884
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
158-234 |
1.57e-05 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 47.80 E-value: 1.57e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSI-VKKLADSVAVMQHGK 234
Cdd:TIGR00956 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQdAYELFDKVIVLYEGY 288
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
15-237 |
1.60e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 48.02 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 15 FRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTppavyLSGDIRFHGeSLLHASEQTLRGVRGNKI 94
Cdd:TIGR00957 644 FTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----VEGHVHMKG-SVAYVPQQAWIQNDSLRE 717
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 95 AMIFQEPmvsLNPLHTleKQLYEVLSLhrgmrreAARAEMIGCLDRVGIRQASQrlrdyphQLSGGERQRVMIAMALLTR 174
Cdd:TIGR00957 718 NILFGKA---LNEKYY--QQVLEACAL-------LPDLEILPSGDRTEIGEKGV-------NLSGGQKQRVSLARAVYSN 778
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 175 PELLIADEPTTALDVSVQAQILS-------LLRELQRELnmgllfITHNLSIVKKLaDSVAVMQHGKCVE 237
Cdd:TIGR00957 779 ADIYLFDDPLSAVDAHVGKHIFEhvigpegVLKNKTRIL------VTHGISYLPQV-DVIIVMSGGKISE 841
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
156-227 |
1.76e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 45.68 E-value: 1.76e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 804913277 156 QLSGGERQ------RVMIAMALLTRPELLIADEPTTALDV-SVQAQILSLLRELQRELNMGLLFITHNLSiVKKLADSV 227
Cdd:cd03240 115 RCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEeNIEESLAEIIEERKSQKNFQLIVITHDEE-LVDAADHI 192
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
25-258 |
2.63e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 45.96 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 25 VNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPpavylSGDIRFHGESLLHASEQTLRGvrgnkiamifqepmvs 104
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-----VGKVDRNGEVSVIAISAGLSG---------------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 105 lnPLHTLEKQLYEVLSLhrGMRREAARAEMigcldrVGIRQASQrLRDYPHQ----LSGGERQRVMIAMALLTRPELLIA 180
Cdd:PRK13546 99 --QLTGIENIEFKMLCM--GFKRKEIKAMT------PKIIEFSE-LGEFIYQpvkkYSSGMRAKLGFSINITVNPDILVI 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 181 DEPTTALDVSVQAQILSLLRELqRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQRADTLLsapthPYTQKLLN 258
Cdd:PRK13546 168 DEALSVGDQTFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL-----PKYEAFLN 239
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
6-188 |
2.73e-05 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 46.00 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQQQHVrpVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLptppavYLSGDIRFHGESLLHASEQT 85
Cdd:cd03289 3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------NTEGDIQIDGVSWNSVPLQK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 86 LR---GVRGNKIaMIFQEPM-VSLNPLHTLEKQlyEVLSLHRGMRREAARAEMIGCLDRVgirqasqrLRDYPHQLSGGE 161
Cdd:cd03289 75 WRkafGVIPQKV-FIFSGTFrKNLDPYGKWSDE--EIWKVAEEVGLKSVIEQFPGQLDFV--------LVDGGCVLSHGH 143
|
170 180
....*....|....*....|....*..
gi 804913277 162 RQRVMIAMALLTRPELLIADEPTTALD 188
Cdd:cd03289 144 KQLMCLARSVLSKAKILLLDEPSAHLD 170
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
305-487 |
2.88e-05 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 46.89 E-value: 2.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SEGRIVFDGQSLDTLNRRQLlpvRHRIQVVFQDpnsslnprlnvlq 383
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQpQSGEILLDGKPVTAEQPEDY---RKLFSAVFTD------------- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iieeglrVH--QPTLSGAQREQQVKAVM-------MEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILDEPTS 454
Cdd:PRK10522 406 -------FHlfDQLLGPEGKPANPALVEkwlerlkMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478
|
170 180 190
....*....|....*....|....*....|....*
gi 804913277 455 SLDKTVQAQI-LALLKSLQQKHRLayIF-ISHDLH 487
Cdd:PRK10522 479 DQDPHFRREFyQVLLPLLQEMGKT--IFaISHDDH 511
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
408-508 |
3.10e-05 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 45.68 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 408 VMMEVGLDPETRHRYPAEFSGGQRQRIAVARALiLKPS----LIILDEPTSSLDktvQAQILALLKSLQqkhRLAY---- 479
Cdd:cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL-SKRStgktLYILDEPTTGLH---FHDVKKLLEVLQ---RLVDkgnt 224
|
90 100 110
....*....|....*....|....*....|....*.
gi 804913277 480 -IFISHDLHVVRAlCHQVIVL------RQGEVVEQG 508
Cdd:cd03271 225 vVVIEHNLDVIKC-ADWIIDLgpeggdGGGQVVASG 259
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
305-508 |
3.80e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 46.86 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALL-RLIRSEGRIVFDGQSldtlnrrQLLPVRHRIQvvfqdpNSSLnpRLNVLq 383
Cdd:TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLaEMDKVEGHVHMKGSV-------AYVPQQAWIQ------NDSL--RENIL- 720
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 384 iieeglrvhqptLSGAQREQQVKAVMMEVGLDPETRhRYPA-----------EFSGGQRQRIAVARALILKPSLIILDEP 452
Cdd:TIGR00957 721 ------------FGKALNEKYYQQVLEACALLPDLE-ILPSgdrteigekgvNLSGGQKQRVSLARAVYSNADIYLFDDP 787
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 453 TSSLDKTVQAQI----LALLKSLQQKHRlayIFISHDLHVVRALcHQVIVLRQGEVVEQG 508
Cdd:TIGR00957 788 LSAVDAHVGKHIfehvIGPEGVLKNKTR---ILVTHGISYLPQV-DVIIVMSGGKISEMG 843
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
157-225 |
3.97e-05 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 46.56 E-value: 3.97e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 157 LSGGERQRVMIAMALL---TRPELLIADEPTTAL---DVSVqaqilsLLRELQRELNMG--LLFITHNLSIVkKLAD 225
Cdd:COG0178 827 LSGGEAQRVKLASELSkrsTGKTLYILDEPTTGLhfhDIRK------LLEVLHRLVDKGntVVVIEHNLDVI-KTAD 896
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
317-508 |
4.62e-05 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 46.31 E-value: 4.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 317 LVGESGSGKSTtglaLLRLIRSEgrivFDGQSLDTLNRRQllpvrhrIQVVFQDP---NSSLnpRLNVLQIIEEglrvHQ 393
Cdd:PTZ00243 691 VLGATGSGKST----LLQSLLSQ----FEISEGRVWAERS-------IAYVPQQAwimNATV--RGNILFFDEE----DA 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 394 PTLSGAQREQQVKAVMMEVGLDPETR-HRYPAEFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQIL--ALLKS 470
Cdd:PTZ00243 750 ARLADAVRVSQLEADLAQLGGGLETEiGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVeeCFLGA 829
|
170 180 190
....*....|....*....|....*....|....*...
gi 804913277 471 LQQKHRlayIFISHDLHVVrALCHQVIVLRQGEVVEQG 508
Cdd:PTZ00243 830 LAGKTR---VLATHQVHVV-PRADYVVALGDGRVEFSG 863
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
6-224 |
4.91e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 46.04 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 6 LAIENLSVGFRQqqhvRPVVNAISLQVNAGETLALVGESGSGKSvtalSILRLL--PTPPAvylSGDIRFhgesllhaSE 83
Cdd:PRK15064 320 LEVENLTKGFDN----GPLFKNLNLLLEAGERLAIIGENGVGKT----TLLRTLvgELEPD---SGTVKW--------SE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 84 QTLRGVRGNKIAMIFQEPMvslnplhtlekQLYEVLSLHRGMRReaaraemigclDRVGIRQASQRL-------RDYPHQ 156
Cdd:PRK15064 381 NANIGYYAQDHAYDFENDL-----------TLFDWMSQWRQEGD-----------DEQAVRGTLGRLlfsqddiKKSVKV 438
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQAqilsllrelqreLNMGL-------LFITHNLSIVKKLA 224
Cdd:PRK15064 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMeSIES------------LNMALekyegtlIFVSHDREFVSSLA 502
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
157-221 |
6.43e-05 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 45.83 E-value: 6.43e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 804913277 157 LSGGERQRVMIAMALLTRP---ELLIADEPTTAL---DVSvqaqilSLLRELQRELNMG--LLFITHNLSIVK 221
Cdd:PRK00349 831 LSGGEAQRVKLAKELSKRStgkTLYILDEPTTGLhfeDIR------KLLEVLHRLVDKGntVVVIEHNLDVIK 897
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
305-484 |
8.66e-05 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 45.12 E-value: 8.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLAL---------LRLIRSEGRIVFDGQ----SLDTLnrrqllpvrhRIQVVFQDp 371
Cdd:TIGR00954 471 LSFEVPSGNNLLICGPNGCGKSSLFRILgelwpvyggRLTKPAKGKLFYVPQrpymTLGTL----------RDQIIYPD- 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 372 nsslnprlNVLQIIEEGLRvhqptlsgaqrEQQVKAVMMEVGLDP--------ETRHRYPAEFSGGQRQRIAVARALILK 443
Cdd:TIGR00954 540 --------SSEDMKRRGLS-----------DKDLEQILDNVQLTHilereggwSAVQDWMDVLSGGEKQRIAMARLFYHK 600
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 804913277 444 PSLIILDEPTSSLDKTVQAQILALLKslqqKHRLAYIFISH 484
Cdd:TIGR00954 601 PQFAILDECTSAVSVDVEGYMYRLCR----EFGITLFSVSH 637
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
425-499 |
1.04e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 42.94 E-value: 1.04e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 425 EFSGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVL 499
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
409-513 |
1.29e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 45.00 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 409 MMEVGLDPETRHRYPAEFSGGQRQRIAVARALILK---PSLIILDEPTSSLDKTVQAQILALLKSLQQKHRLAyIFISHD 485
Cdd:TIGR00630 813 LCDVGLGYIRLGQPATTLSGGEAQRIKLAKELSKRstgRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTV-VVIEHN 891
|
90 100 110
....*....|....*....|....*....|....
gi 804913277 486 LHVVRALCHqVIVL------RQGEVVEQGQCERV 513
Cdd:TIGR00630 892 LDVIKTADY-IIDLgpeggdGGGTVVASGTPEEV 924
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
305-521 |
1.69e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 43.24 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALL---RLIRSEGRIVFDGQSLDTLNRRQllPVRHRIQVVFQDP---------- 371
Cdd:PRK09580 20 LNLEVRPGEVHAIMGPNGSGKSTLSATLAgreDYEVTGGTVEFKGKDLLELSPED--RAGEGIFMAFQYPveipgvsnqf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 372 --NSSLNP-----------RLNVLQIIEEglrvhqptlsgaqreqqvKAVMMEVGLDPETRhRYPAEFSGGQRQRIAVAR 438
Cdd:PRK09580 98 flQTALNAvrsyrgqepldRFDFQDLMEE------------------KIALLKMPEDLLTR-SVNVGFSGGEKKRNDILQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQ-VIVLRQGEVVEQGQCERVFTAP 517
Cdd:PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR-SFIIVTHYQRILDYIKPDyVHVLYQGRIVKSGDFTLVKQLE 237
|
....
gi 804913277 518 QQAY 521
Cdd:PRK09580 238 EQGY 241
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
157-227 |
1.76e-04 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 44.43 E-value: 1.76e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 804913277 157 LSGGERQRVMIAMALLT---RPELLIADEPTTALDVSVQAQILSLLRELQrELNMGLLFITHNLSIVkKLADSV 227
Cdd:PRK00635 810 LSGGEIQRLKLAYELLApskKPTLYVLDEPTTGLHTHDIKALIYVLQSLT-HQGHTVVIIEHNMHVV-KVADYV 881
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
305-457 |
1.87e-04 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 42.91 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTTGLALLRLIRSE-GRIVFDGQSLDTLNRrqllpVRHriqVVFQDPNSSLNPRLNVLQ 383
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVEsGQIQIDGKTATRGDR-----SRF---MAYLGHLPGLKADLSTLE 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 804913277 384 IIEEGLRVHqptlsGAQREQQVKAVMMEVGL----DPETRHrypaeFSGGQRQRIAVARALILKPSLIILDEPTSSLD 457
Cdd:PRK13543 102 NLHFLCGLH-----GRRAKQMPGSALAIVGLagyeDTLVRQ-----LSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
409-525 |
1.91e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.11 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 409 MMEVGLdPETRHRYP-AEFSGGQRQRIAVARALILKPSLIILDEPTSSLD-KTVQ--AQILALLKSlqqkhrlAYIFISH 484
Cdd:PRK15064 139 LLGVGI-PEEQHYGLmSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDiNTIRwlEDVLNERNS-------TMIIISH 210
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 804913277 485 DLHVVRALCHQVIVLRQGEV-VEQGQCERVFTAPQQAYTRQL 525
Cdd:PRK15064 211 DRHFLNSVCTHMADLDYGELrVYPGNYDEYMTAATQARERLL 252
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
305-508 |
2.21e-04 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 42.63 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLGLVGESGSGKSTtgLALlRLIRSEGRIvfdgQSLDTLNR--RQLLPVRHRIQVVF----------QDPN 372
Cdd:cd03270 14 VDVDIPRNKLVVITGVSGSGKSS--LAF-DTIYAEGQR----RYVESLSAyaRQFLGQMDKPDVDSieglspaiaiDQKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 373 SSLNPRLNVLQIIE--EGLRVHQPTLSGAQREQQvkavMMEVGLDPETRHRYPAEFSGGQRQRIAVARAL--ILKPSLII 448
Cdd:cd03270 87 TSRNPRSTVGTVTEiyDYLRLLFARVGIRERLGF----LVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIgsGLTGVLYV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 804913277 449 LDEPTSSLDKTVQAQILALLKSLQQKHRlAYIFISHDLHVVRALCHQVIV-----LRQGEVVEQG 508
Cdd:cd03270 163 LDEPSIGLHPRDNDRLIETLKRLRDLGN-TVLVVEHDEDTIRAADHVIDIgpgagVHGGEIVAQG 226
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
22-202 |
2.26e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 44.33 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTppAVYLSGDIRFhgesllhaseqtlrgVRGNKIAMIFQEP 101
Cdd:TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKT-TLLNVLAERVT--TGVITGGDRL---------------VNGRPLDSSFQRS 837
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 102 M--VSLNPLHTLEKQLYEVLSLHRGMRR--EAARAEMIGCLDRVgIRQASqrLRDYPHQLSG--GE------RQRVMIAM 169
Cdd:TIGR00956 838 IgyVQQQDLHLPTSTVRESLRFSAYLRQpkSVSKSEKMEYVEEV-IKLLE--MESYADAVVGvpGEglnveqRKRLTIGV 914
|
170 180 190
....*....|....*....|....*....|....
gi 804913277 170 ALLTRPELLI-ADEPTTALDVSVQAQILSLLREL 202
Cdd:TIGR00956 915 ELVAKPKLLLfLDEPTSGLDSQTAWSICKLMRKL 948
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
2-188 |
2.80e-04 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 42.53 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 2 TSPLLAIENLSVGfrqqQHVRPVVNAISLQVNAGETLALVGESGSGKSvTALSILRLLPTPPAvylsGDIRFHGEsllHA 81
Cdd:PRK13543 8 APPLLAAHALAFS----RNEEPVFGPLDFHVDAGEALLVQGDNGAGKT-TLLRVLAGLLHVES----GQIQIDGK---TA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 82 SeqtlRGVRGNKIAMIFQEPMVSLNpLHTLEkQLYEVLSLH-RGMRREAARAEMIgcldrVGIRQASQRLrdyPHQLSGG 160
Cdd:PRK13543 76 T----RGDRSRFMAYLGHLPGLKAD-LSTLE-NLHFLCGLHgRRAKQMPGSALAI-----VGLAGYEDTL---VRQLSAG 141
|
170 180
....*....|....*....|....*...
gi 804913277 161 ERQRVMIAMALLTRPELLIADEPTTALD 188
Cdd:PRK13543 142 QKKRLALARLWLSPAPLWLLDEPYANLD 169
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
156-189 |
7.18e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 42.41 E-value: 7.18e-04
10 20 30
....*....|....*....|....*....|....
gi 804913277 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189
Cdd:PRK11819 445 VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
3-196 |
8.33e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 42.27 E-value: 8.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 3 SPLLAIENLSVGFRQQQHvRPVVNAISLQVNAGETLALVGESGSGKsvTALSILRLLPTPPAVYLSGDIRfhgESLLHAS 82
Cdd:PLN03232 612 APAISIKNGYFSWDSKTS-KPTLSDINLEIPVGSLVAIVGGTGEGK--TSLISAMLGELSHAETSSVVIR---GSVAYVP 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 83 EqtlrgvrgnkIAMIFQePMVSLNPL--HTLEKQLY----EVLSLHRGMRREAARAemigcLDRVGIRQASqrlrdyphq 156
Cdd:PLN03232 686 Q----------VSWIFN-ATVRENILfgSDFESERYwraiDVTALQHDLDLLPGRD-----LTEIGERGVN--------- 740
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL 196
Cdd:PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
427-505 |
8.39e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 42.19 E-value: 8.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 427 SGGQRQRIAVARALILKPSLIILDEPTSSLD-KTVQAQILALlkslqQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVV 505
Cdd:PRK15064 440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDmESIESLNMAL-----EKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
305-503 |
1.38e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 41.14 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 305 ISFTLHPGETLgLVGESGSGKSTTgLALLRLIRSEGR-----------------------IVFDGQSLDTLNRRQLLPVR 361
Cdd:COG3593 17 LSIELSDDLTV-LVGENNSGKSSI-LEALRLLLGPSSsrkfdeedfylgddpdlpeieieLTFGSLLSRLLRLLLKEEDK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 362 HRIQVVFQDPNSSLNPRLNVLQ-----IIEEGLRVHQPTLSGAQREQQVKAVMMEVGLdpETRHRYPAEFSG-GQRQRI- 434
Cdd:COG3593 95 EELEEALEELNEELKEALKALNellseYLKELLDGLDLELELSLDELEDLLKSLSLRI--EDGKELPLDRLGsGFQRLIl 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 435 -AVARALIL-----KPSLIILDEPTSSLDKTVQAQILALLKSLQQKHrlAYIFIS-HDLHVVRALC-HQVIVLRQGE 503
Cdd:COG3593 173 lALLSALAElkrapANPILLIEEPEAHLHPQAQRRLLKLLKELSEKP--NQVIITtHSPHLLSEVPlENIRRLRRDS 247
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
234-276 |
1.70e-03 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 37.73 E-value: 1.70e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 804913277 234 KCVENQRADTLLSAPTHPYTQKLLNSEPT-----GDPVPLPaGQAPLL 276
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTikkrdRKLISIP-GEVPSL 47
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
427-465 |
2.47e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 40.98 E-value: 2.47e-03
10 20 30
....*....|....*....|....*....|....*....
gi 804913277 427 SGGQRQRIAVARALILKPSLIILDEPTSSLDKTVQAQIL 465
Cdd:PLN03140 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
22-204 |
2.69e-03 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 40.88 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 22 RPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPT--PPAVYLSGDIRFHGES--LLHASeqtlrgVRGNkiaMI 97
Cdd:PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPrsDASVVIRGTVAYVPQVswIFNAT------VRDN---IL 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 98 FQEPmvslnplhtLEKQLYE----VLSLHRGMRREAAraemiGCLDRVGIRQASqrlrdyphqLSGGERQRVMIAMALLT 173
Cdd:PLN03130 701 FGSP---------FDPERYEraidVTALQHDLDLLPG-----GDLTEIGERGVN---------ISGGQKQRVSMARAVYS 757
|
170 180 190
....*....|....*....|....*....|...
gi 804913277 174 RPELLIADEPTTALDVSVQAQILS--LLRELQR 204
Cdd:PLN03130 758 NSDVYIFDDPLSALDAHVGRQVFDkcIKDELRG 790
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
157-234 |
4.14e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 40.15 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILsllrelqRELNMGLL------FITHNLSIVkKLADSVAVM 230
Cdd:PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVV-------EECFLGALagktrvLATHQVHVV-PRADYVVAL 854
|
....
gi 804913277 231 QHGK 234
Cdd:PTZ00243 855 GDGR 858
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
425-499 |
4.34e-03 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 39.79 E-value: 4.34e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 804913277 425 EFSGGQRQRIAVARALILKPSLIILDEPTSSLDktVQAQILA--LLKSLQQKHrlAYIFISHDLHVVRALCHQVIVL 499
Cdd:PRK13409 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLD--IRQRLNVarLIRELAEGK--YVLVVEHDLAVLDYLADNVHIA 284
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
397-492 |
7.40e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.26 E-value: 7.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 804913277 397 SGAQREQQVKAVMMEVGLDPETRHRypaeFSGGQRQ------RIAVARALILKPSLIILDEPTSSLDKT-VQAQILAL-- 467
Cdd:TIGR00606 1175 SDKRRNYNYRVVMLKGDTALDMRGR----CSAGQKVlasliiRLALAETFCLNCGIIALDEPTTNLDREnIESLAHALve 1250
|
90 100
....*....|....*....|....*.
gi 804913277 468 -LKSLQQKHRLAYIFISHDLHVVRAL 492
Cdd:TIGR00606 1251 iIKSRSQQRNFQLLVITHDEDFVELL 1276
|
|
| RloC |
COG4694 |
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis]; |
441-493 |
8.87e-03 |
|
Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis];
Pssm-ID: 443729 [Multi-domain] Cd Length: 692 Bit Score: 38.95 E-value: 8.87e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 804913277 441 ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHRlaYIFI-SHDLHVVRALC 493
Cdd:COG4694 515 DLKKKIVVIDDPVSSLDSNHRFAVASLLKELSKKAK--QVIVlTHNLYFLKELR 566
|
|
| |
