NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|901189511|emb|CQF27298|]
View 

peptidoglycan-associated lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. DT104]

Protein Classification

PRK10802 family protein( domain architecture ID 11484955)

PRK10802 family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-174 2.11e-119

peptidoglycan-associated lipoprotein Pal;


:

Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 334.53  E-value: 2.11e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511   1 MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTGMDANGnGNMSSEEQARLQMQQLQQNNIVYFDLDKYD 80
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGGN-GNMSSEEQARLQMQQLQQNNIVYFDLDKYD 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  81 IRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD 160
Cdd:PRK10802  80 IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD 159

                        170
                 ....*....|....
gi 901189511 161 EAAYAKNRRAVLVY 174
Cdd:PRK10802 160 EAAYAKNRRAVLVY 173
 
Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-174 2.11e-119

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 334.53  E-value: 2.11e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511   1 MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTGMDANGnGNMSSEEQARLQMQQLQQNNIVYFDLDKYD 80
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGGN-GNMSSEEQARLQMQQLQQNNIVYFDLDKYD 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  81 IRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD 160
Cdd:PRK10802  80 IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD 159

                        170
                 ....*....|....
gi 901189511 161 EAAYAKNRRAVLVY 174
Cdd:PRK10802 160 EAAYAKNRRAVLVY 173
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 71-174 1.38e-69

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 205.87  E-value: 1.38e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511   71 IVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG 150
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 901189511  151 KEKPAVLGHDEAAYAKNRRAVLVY 174
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 72-174 2.20e-41

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 140.69  E-value: 2.20e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  72 VYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 151
Cdd:COG2885  189 VYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGE 268

                         90       100
                 ....*....|....*....|...
gi 901189511 152 EKPAVLGHDEAAYAKNRRAVLVY 174
Cdd:COG2885  269 SRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 72-173 3.04e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 134.22  E-value: 3.04e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  72 VYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 151
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|..
gi 901189511 152 EKPAVLGHDEAAYAKNRRAVLV 173
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 74-167 2.28e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 83.18  E-value: 2.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511   74 FDLDKYDIRSDFAAMLDAHANFLRSNPSYK-VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKE 152
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 901189511  153 KPAVLGHDEAAYAKN 167
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
1-174 2.11e-119

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 334.53  E-value: 2.11e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511   1 MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTGMDANGnGNMSSEEQARLQMQQLQQNNIVYFDLDKYD 80
Cdd:PRK10802   1 MQLNKVLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGGN-GNMSSEEQARLQMQQLQQNNIVYFDLDKYD 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  81 IRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD 160
Cdd:PRK10802  80 IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD 159

                        170
                 ....*....|....
gi 901189511 161 EAAYAKNRRAVLVY 174
Cdd:PRK10802 160 EAAYAKNRRAVLVY 173
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 71-174 1.38e-69

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 205.87  E-value: 1.38e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511   71 IVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG 150
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 901189511  151 KEKPAVLGHDEAAYAKNRRAVLVY 174
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 72-174 2.20e-41

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 140.69  E-value: 2.20e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  72 VYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 151
Cdd:COG2885  189 VYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAVGYGE 268

                         90       100
                 ....*....|....*....|...
gi 901189511 152 EKPAVLGHDEAAYAKNRRAVLVY 174
Cdd:COG2885  269 SRPVASNDTEEGRAKNRRVEIVV 291
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 72-173 3.04e-41

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 134.22  E-value: 3.04e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  72 VYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 151
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|..
gi 901189511 152 EKPAVLGHDEAAYAKNRRAVLV 173
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIV 105
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 74-167 2.28e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 83.18  E-value: 2.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511   74 FDLDKYDIRSDFAAMLDAHANFLRSNPSYK-VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKE 152
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNtITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 901189511  153 KPAVLGHDEAAYAKN 167
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
MotB COG1360
Flagellar motor protein MotB [Cell motility];
72-173 7.08e-17

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 73.72  E-value: 7.08e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  72 VYFDLDKYDIRSDFAAMLDAHANFLRSNPsYKVTVEGHADER--GTPEY--NISLGERRANAVKMYLQGKGVSADQISIV 147
Cdd:COG1360   61 VLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLIEGGVPPERLSAV 139

                         90       100
                 ....*....|....*....|....*.
gi 901189511 148 SYGKEKPAVLGHDEAAYAKNRRAVLV 173
Cdd:COG1360  140 GYGDTRPLAPNDTPEGRARNRRVEIV 165
PRK10808 PRK10808
outer membrane protein A; Reviewed
 103-154 1.18e-08

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 53.16  E-value: 1.18e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 901189511 103 KVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKP 154
Cdd:PRK10808 259 SVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNP 310
PRK10510 PRK10510
OmpA family lipoprotein;
70-169 3.95e-08

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 51.03  E-value: 3.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  70 NIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSY 149
Cdd:PRK10510 112 NNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGM 191

                         90       100
                 ....*....|....*....|
gi 901189511 150 GKEKPAVLGHDEAAYAKNRR 169
Cdd:PRK10510 192 GPANPIASNSTAEGKAQNRR 211
PRK09039 PRK09039
peptidoglycan -binding protein;
106-169 2.51e-07

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 49.19  E-value: 2.51e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 901189511 106 VEGHADER---GTPEY--NISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 169
Cdd:PRK09039 267 VDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPADRLAAAGFGEFQPLDPGDTPEARARNRR 335
PRK09967 PRK09967
OmpA family protein;
72-173 1.36e-06

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 45.74  E-value: 1.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  72 VYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAV-KMYLQGKGVSADQISIVSYG 150
Cdd:PRK09967  54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVaDAWAMGGQIPRSNLTTQGLG 133

                         90       100
                 ....*....|....*....|...
gi 901189511 151 KEKPAVLGHDEAAYAKNRRAVLV 173
Cdd:PRK09967 134 KKYPIASNKTAQGRAENRRVAVV 156
motB PRK07734
flagellar motor protein MotB; Reviewed
 72-169 1.53e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 43.58  E-value: 1.53e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  72 VYFDLDKYDIRSDFAAMLDAHANFLRSNPSYKVTVEGHADErgTP------EYNISLGERRA-NAVKMYLQGKGVSADQI 144
Cdd:PRK07734 144 ILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDN--VPianaqfASNWELSVMRAvNFMQVLLENKELDPEKF 221

                         90       100
                 ....*....|....*....|....*
gi 901189511 145 SIVSYGKEKPAVLGHDEAAYAKNRR 169
Cdd:PRK07734 222 SAKGYGEYKPIASNDTAEGRAKNRR 246
motB PRK08457
flagellar motor protein MotB; Reviewed
 100-171 2.56e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 43.17  E-value: 2.56e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 901189511 100 PSYKVTVEGHAD--ERGTPEY--NISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAV 171
Cdd:PRK08457 154 KQVKINVRGYTDnsPLNKSRYkdHYELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVE 229
PRK06925 PRK06925
flagellar motor protein MotB;
72-173 3.80e-05

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 42.44  E-value: 3.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  72 VYFDLDKYDIRSDFAAMLDAHANFLRSNPSyKVTVEGHADERGTPEY----NISLGERRANAVKMYLQGK-GVSADQISI 146
Cdd:PRK06925 120 VLFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTSKeKLDSSRFIA 198

                         90       100
                 ....*....|....*....|....*..
gi 901189511 147 VSYGKEKPAVLGHDEAAYAKNRRAVLV 173
Cdd:PRK06925 199 VGYADTKPVVPNTTEENMQENRRVEIV 225
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 74-172 1.69e-04

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 40.43  E-value: 1.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  74 FDLDKYDIRSDFAAMLDAHANFLRSNPSyKVTVEGHADERgtPEYNISL-------GERRANAVKMYLQGKGVSADQISI 146
Cdd:PRK06742 119 FDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSR--PIHNDKFpsnwelsSARAANMIHHLIEVYNVDDKRLAA 195

                         90       100
                 ....*....|....*....|....*.
gi 901189511 147 VSYGKEKPAVLGHDEAAYAKNRRAVL 172
Cdd:PRK06742 196 VGYADTKPVVPNDSPQNWEKNRRVVI 221
motB PRK06667
flagellar motor protein MotB; Validated
 93-169 1.92e-03

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 37.47  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  93 ANFLRS--NPSYKVTVEGHADERGTPEYNIS-----LGERRANAVKMYLQGKGV-SADQISIVSYGKEKPAVLGHDEAAY 164
Cdd:PRK06667 149 ASFIGFldLAGRNFRIEGHTDNVDVNPEGPWksnweLSGARAVNMLEYILNYGDqSESWFQVSGFAGSRPLATEDTPEGR 228


                 ....*
gi 901189511 165 AKNRR 169
Cdd:PRK06667 229 AYNRR 233
motB PRK08944
flagellar motor protein MotB; Reviewed
 84-169 3.54e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 36.91  E-value: 3.54e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 901189511  84 DFAAMLDAHANFLRSNPSyKVTVEGHADERGTP--EY--NISLGERRANAVKMYL-QGKGVSADQISIVSYGKEKPAVLG 158
Cdd:PRK08944 193 KFKPVVRKIGELLKDVPG-IITVSGHTDNVPISseLYrsNWDLSSARAVAVAHELlKVKGFDPQRLKVVGMADTQPLVPN 271

                         90
                 ....*....|.
gi 901189511 159 HDEAAYAKNRR 169
Cdd:PRK08944 272 DTAENRARNRR 282
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH