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Conserved domains on  [gi|893301465|emb|CNF35985|]
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oligopeptide transporter permease [Yersinia similis]

Protein Classification

oligopeptide ABC transporter permease OppB( domain architecture ID 11484202)

oligopeptide ABC transporter permease OppB is part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-306 0e+00

oligopeptide ABC transporter permease OppB;


:

Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 587.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPSFK 80
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  81 YKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKW 160
Cdd:PRK09471  81 YKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 161 LPGGGWNGGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAF 240
Cdd:PRK09471 161 LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 893301465 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:PRK09471 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
 
Name Accession Description Interval E-value
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-306 0e+00

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 587.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPSFK 80
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  81 YKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKW 160
Cdd:PRK09471  81 YKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 161 LPGGGWNGGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAF 240
Cdd:PRK09471 161 LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 893301465 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:PRK09471 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-306 1.49e-127

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 365.93  E-value: 1.49e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTG--ERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPS 78
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAAllGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  79 FKYKDyTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIIL 158
Cdd:COG0601   81 FVYGR-PVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKL 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 159 KWLPGGGWN------GGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPV 232
Cdd:COG0601  160 GWLPVSGRVspwedfLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 893301465 233 LSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:COG0601  240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-306 2.49e-27

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 105.07  E-value: 2.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  112 GVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIilkwlpgggwngGAPKYIILPMVALSLAYIASIAR 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL------------SILGHGILPAIILALLGWAGYAR 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  192 ITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRD 271
Cdd:pfam00528  69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYD 148

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 893301465  272 YSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:pfam00528 149 YPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-288 6.89e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 80.02  E-value: 6.89e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  94 FPVSAKLGFAAFMLAVILGVSAGVIAALNQNtKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKWLPGGGWnggapky 173
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGL------- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 174 iILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAFVGIITGSMVIETI 253
Cdd:cd06261   73 -GLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 893301465 254 FG----LPGIGQLFVNGALNRDYSLVLSLTILVGALTIL 288
Cdd:cd06261  152 GGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-306 0e+00

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 587.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPSFK 80
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  81 YKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKW 160
Cdd:PRK09471  81 YKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 161 LPGGGWNGGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAF 240
Cdd:PRK09471 161 LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 893301465 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:PRK09471 241 VGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-306 1.49e-127

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 365.93  E-value: 1.49e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTG--ERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPS 78
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAAllGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  79 FKYKDyTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIIL 158
Cdd:COG0601   81 FVYGR-PVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKL 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 159 KWLPGGGWN------GGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPV 232
Cdd:COG0601  160 GWLPVSGRVspwedfLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPV 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 893301465 233 LSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:COG0601  240 VTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-306 7.46e-62

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 198.40  E-value: 7.46e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP--FTGERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPS 78
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDParLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  79 FKYKDyTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIIL 158
Cdd:PRK15081  81 MVSRR-PVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVEL 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 159 KWLPGGGwnGGAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGP 238
Cdd:PRK15081 160 GWLPTVG--ADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGL 237

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 893301465 239 AFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:PRK15081 238 QFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRY 305
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-305 9.29e-61

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 195.69  E-value: 9.29e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERNLPP--EVMANIEAKYHLNDPIYKQYFNYLGQLAKGDL 75
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPaldYLRLSNLPPtpEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  76 GPSFKYKDYTVNDLVSSsFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFA 155
Cdd:PRK10352  81 GISFATQRPVLDDLLNF-LPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 156 IILKWLPGGGWNGGApkYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSY 235
Cdd:PRK10352 160 VYLQWLPAMGYGGWQ--HIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITA 237

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 236 MGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
Cdd:PRK10352 238 VGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-306 1.60e-54

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 180.39  E-value: 1.60e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFT---GERNLPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGP 77
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMimaGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  78 SFKYKdYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAII 157
Cdd:PRK10914  81 SLKSR-IPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVH 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 158 LKWLPGGG------------------------WNG-----GAPKYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRT 208
Cdd:PRK10914 160 WNLTPVSGrvsdmvflddsnpltgfmlidtaiWGEdgnfiDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 209 ARAKGLPLRTIVLRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTIL 288
Cdd:PRK10914 240 ARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIIL 319

                        330
                 ....*....|....*...
gi 893301465 289 FNAIVDVLYAVIDPKIRY 306
Cdd:PRK10914 320 VNLLVDLLYGVVNPRIRH 337
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 1-306 1.83e-42

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 149.90  E-value: 1.83e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP----------------------------------------FTGERN 40
Cdd:PRK15133   1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPvdqaiaaiefgqagglpgaggegvrashaqtgvgnisdsnYRGGRG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  41 LPPEVMANIEAKYHLNDPIYKQYFNYLGQLAKGDLGPSFkYKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAA 120
Cdd:PRK15133  81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSL-FRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 121 LNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFA--IILKWLPGGG----------WNGGAPKY---IILPMVALSLAY 185
Cdd:PRK15133 160 VRNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGlvsanfdslpWYQKITDYlwhITLPVLATVIGG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 186 IASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAFVGII-TGSMVIETIFGLPGIGQLFV 264
Cdd:PRK15133 240 FAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFfTGSLLIEVMFSLNGLGLLGY 319

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 893301465 265 NGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:PRK15133 320 EATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDF 361
PRK15110 PRK15110
peptide ABC transporter permease SapB;
1-302 5.02e-37

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 134.43  E-value: 5.02e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465   1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGErnlppevmanieakyhlndPIYKQYFNYLGQLAKGDLGPSfK 80
Cdd:PRK15110   1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQGA-------------------SLWDAWVFWFNGLLHWDFGVS-S 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  81 YKDYTVNDLVSSSFPVSAKLGFAAFMLAVILGVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKW 160
Cdd:PRK15110  61 INGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGW 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 161 LPGGG-------------------WNGGAP----------KYIILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARA 211
Cdd:PRK15110 141 LPVSGrfdllyevkpvtgfalidaWLSDSPwrdemimsaiRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAAT 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 212 KGLPLRTIVLRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNA 291
Cdd:PRK15110 221 RGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNV 300

                        330
                 ....*....|.
gi 893301465 292 IVDVLYAVIDP 302
Cdd:PRK15110 301 LSDILGAMANP 311
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-306 2.49e-27

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 105.07  E-value: 2.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  112 GVSAGVIAALNQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIilkwlpgggwngGAPKYIILPMVALSLAYIASIAR 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAIL------------SILGHGILPAIILALLGWAGYAR 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  192 ITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRD 271
Cdd:pfam00528  69 LIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYD 148

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 893301465  272 YSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
Cdd:pfam00528 149 YPEIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-288 6.89e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 80.02  E-value: 6.89e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  94 FPVSAKLGFAAFMLAVILGVSAGVIAALNQNtKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIILKWLPGGGWnggapky 173
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGL------- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 174 iILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAFVGIITGSMVIETI 253
Cdd:cd06261   73 -GLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 893301465 254 FG----LPGIGQLFVNGALNRDYSLVLSLTILVGALTIL 288
Cdd:cd06261  152 GGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 96-233 2.94e-10

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 59.74  E-value: 2.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  96 VSAKLGFAAFMLAVILGVSAGVIAALnQNTKWDYTVMGFAMTGVVIPSFvvapLLVLVFAIILkwlpGGGwnggapkyII 175
Cdd:COG1173   80 ISLLVGLLAVLIALVIGVLLGLLAGY-FGGWVDAVLMRLVDVLLAFPSL----LLAIALVAVL----GPG--------LL 142

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 893301465 176 LPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALkPALLPVL 233
Cdd:COG1173  143 NVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHIL-PNVLPPL 199
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-67 3.32e-08

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 51.07  E-value: 3.32e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465    1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGeRNLPPEVMANIEAKYHLNDPIYKQYFNYL 67
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDParlACG-KNCTPETLALIRHNLGLDKPIPVQYWHFL 69
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 96-296 1.34e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 48.61  E-value: 1.34e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  96 VSAKLGFAAFMLAVILGVSAGVIAALNQntKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAIilkwlpgggwnGGAPKYII 175
Cdd:COG0600   65 ASLLRVLLGFALAALLGVPLGLLLGLSR--LLRRLLDPLLVFLRPIPPLALAPLLILWFGI-----------GEASKIFV 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 176 LPMVALSLAYIASIARI--TRGSMIEVLhsnfiRTARAKGLP-LRTIVLRHALkPALLPVLSY-MGPAFVGIITGsmviE 251
Cdd:COG0600  132 IFLGAFFPILLNTAAGVrsVDPELLELA-----RSLGASRWQiLRKVVLPAAL-PYIFTGLRIaLGLAWIGLVVA----E 201

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 893301465 252 TIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVL 296
Cdd:COG0600  202 LLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLL 246
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 188-294 3.43e-04

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 41.89  E-value: 3.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 188 SIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYMGPAFVGIITGSMVIETI-FGL----PGIGQL 262
Cdd:PRK15021 217 SLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLgFGLplgsPSLGEL 296

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 893301465 263 FVNGALNRD-----YSLVLSLTILVGALTILFNAIVD 294
Cdd:PRK15021 297 LLQGKNNLQapwlgITAFLSVAILLSLLIFIGEAVRD 333
PRK15406 PRK15406
oligopeptide ABC transporter permease OppC; Provisional
 96-305 3.46e-03

oligopeptide ABC transporter permease OppC; Provisional


Pssm-ID: 185304 [Multi-domain]  Cd Length: 302  Bit Score: 38.66  E-value: 3.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465  96 VSAKLGFAAFMLAVILGVSAGVIAALnQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLVFAiilkwlpgggwnggapKYII 175
Cdd:PRK15406 103 ISLMVGVAAALVAVVVGTLYGSLSGY-LGGKVDSVMMRLLEILNSFPFMFFVILLVTFFG----------------QNIL 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 893301465 176 LPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPLRTIVLRHALKPALLPVLSYmgpafVGIITGSMVI-ETIF 254
Cdd:PRK15406 166 LIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVY-----ASLLVPSMILfESFL 240

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 893301465 255 GLPGIGQ---------LFVNGALNRDYS---LVLSLTILVGALtILFNAIVDVLYAVIDPKIR 305
Cdd:PRK15406 241 SFLGLGTqeplsswgaLLSDGANSMEVSpwlLLFPAGFLVVTL-FCFNFIGDGLRDALDPKDR 302
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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